RNA id: XM_022662521.1


Basic Information

Item Value
RNA id XM_022662521.1
length 4770
RNA type mRNA
GC content 0.38
exon number 9
gene id LOC111188745
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 52769242 ~ 52781864 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCTTTTTCACATTCCTCCTTACCTTCACAGAAATACTGCACAACATGTGAGTGATTGGTAAAAACATGAATGAAAACCaagcaaaaaaaactatttagcaAAATGATTCGCTGCTAATCAAAACCTGTGACAGTGGGTTTGTGACTGTGGTCTATAGAGTGCCCTGTAATTATCAGTGGTGTAATATTTGAATATAGTACAATATACTTAATTATTCTTCtgagtaaattttactttaagtAAATCTTACTAAGTCCACAGGTGAAATTGGTTATCAAAGTAATTGTGTGCAGTCATATAGCTCAGTTAAGATAAgagttaaatagttaaaaatacataatgtgACAGCTTTTAATTAAGGTAGCCAATGGTTATCAAATTCTAGCTTTACAACAAATCACTAAAAGCAATAACAACTATTGTTGCtatcagacaaaaaaataaaaaatttaacaatTTTTAAACTATTTCAAATTAACAGAAGCACTACTGCATAGACAGAAAATGTTGTTTCATGCCAGCATATTGCCACAGCCAGCTGTTATTAAATGTTGCTTAAGTTACTTATTTAGCGATTgtaagcttttttattttggtagttCATGCCCTTGGTCATACTAAGCACAATCACTGGTTAACAAAAAATACTAACTAATATTATCACAGCATACAAGCCGACCagtcattcttttttttgtttacttattatttattaatacgtATACTTATTAATATGAGTTTGTTATGGCATTTGTGTGAACGTGTGTTGTAAATACGATATTTTTGACATGACTTGAAGGCAGAATAACTCCATGTTTGTCTTGAATTAAGCTAACTAAATCAAATCATCCAATCAAATCCAGAAAGATggcttaataataatatttttttagcttgAATGTCCcatttttggggaaaaagaTGTCCATTTTTATGGTTACCTATTTCTGTATAGACTTCCTATAACTcactattaaagtaaaaaaaaaatcccaaagaTTTTGCCAGGCATACATTACTACAGgctttttggtaacactttacaatacggATTAATGGaataacatgaattaatgcagcATTTCATGAGTGAGTAAACATTCATTCATGCACATAATACATCATGAGTCATCATGAATATACatgaattaaaaatgaacaatatattAGTTAATGGAGTAATCAAGGTACAAACGTCATCAACTGGCATGAGTTATTAATGATGTTTATGCAGATCTTCATGTTAGTTATTAGGGAAATTGATCAGCATTACTTAAGCATAATTTCTTCATGAGGTTATATTACTCACTCATGAAATATTGCATGAATTTACGCTATTatatgtacccttattgtaaagtgataccagcttttttctcttatttgtgCAAATAGCTGAACCATGGGGAAATGCTATCTGACTCTCCAATAGAAAAACGTTTCTGAGTTgtttaaagttgtcagcagaagtAAATAGTCCCACATATGCATACTTAATGTTTGCTAAAGGTTGCAAATCAGGTCTTGCTAGAAAATGTCTTCCTTTTATCCATGTTAGCGTTGCATTGAGAAATGATAACAAGCTTGTTATGACCACATCTCCAAAAACTGCTCTGCAGGCATCTCATGACtgcactgtgtttttaaacagtttgaaaatgtgtTTGCTGTATTTACTCTGTTCTCCAGGATCCAGAGAAGCTGTTCGGAAACGAACCTTCACACAGTGGATTAACACTCATCTAAAGAAAtttGACCCTTCCATGCAGGTGGATGATTTGTACACAGATGTTCAAGATGGGAAGATTTTAATGGCATTACTGGAGGAGCTCTCAGGCTGTAAAATGCTCCACAGGTTCAGACCATCTACCCATCGTATTTTCACCATCAGCAACATCGCCAAGGTCCTGGAGTTCCTTGAGGACAGGAATGCGAGAGTCATGAGCATGGAGGCTGCAGACGTCGCTGATGGAAAACCTTCAGTTATACTTGCACTTATCTGGACTATCATAGTTTACTTTCAGCTAAAGGAAGTCACAGGAAGTCTGGGGAGGCGCTTTTCCTCCAGTGTGTCCAGTCTGGTGTCTCTGGCGGACAGCAGTGACTCGGCCCGCAGCTCTCCTGTGCCCTCTAGTGATGAGCACTGCAGCACTCTTCCTTCCAAGAGGAAAAGAGAATCCCGCCAACCCAAATACTACCGCAGCAGAGCCATCAGCACACTGCTGAACTGGACTCAGACCTGCACCGCACCGTATGGTGTGGAGGTACAGGACTTTGGTAAAAGCTGGAGGAATGGATTAGCATTTCTGGCGTTGGTAAAATGTGCCAGACCTGAGTCGGTGGACATGACAGCAGCTCTGACCTCAACCCCCAGAGAGAACCTCACACAGGCCTTCAGAGCAGCTCAGCACTGCCTGGGGATCCCTCCACTGCTGGACCCAGAGGATGTAATGATGCGCTCTCCGGATGAGCAGTCCGTCATCACGTATGTGTCACAGTTTCTCCAGCGCTTCCCACAGATCAGAGATGATGACACATTGATGTTTCCAGGAGACAAATTTAGCCCTATTACAGATTATTCTGACTCTGAACTATCCAGCACTTCGCTGGGGTTTGAGGACTTCTCTGATTTCACACAGAAGGAGCCAAATCAGGAGCCTGGTTCTTACTGCTGCTTGAGTTCAactgcagaagaagaagaattcaGCCAATCAAATGGACAGTACCTTCATAGTTCCATTGAGAGGCACTGTTGGAGTTCTTTGCCACAGAAAAAGATCCTGGAGACATATGGAGGCTTAGCTCATGGTTCAGAGGAAGGCATACACATTCTGCCTGCGTTGGACTCAGAGGAAGAGGATGCGTACAGCTACATCCTGGAGCTGGACGATGAAGAATTAAGCCCTTCTAATGAGCTTGAAAAATGCAGTGCACCAATCAATGCTCAAAAGTCCCATCATGATTTATTAGGTGATTTGCAACACAATAATGGAGAAAGGCATCATATATGTCCATCATCGGAGATACAGAAGCCAAGTCTCCAACTGTCATCAGAATCCTCCAGAGAAACACATGAAGAACACATTTCAGAAGGTGATGTCTCTCTTAAGACCAACAAAACTGATGTTCACCACAGGCAGGGTGAATTAGCTATAGTGACACCTACAGGTCCAGATCTGTGCACCCAGAAAGATCATCTAAAtctcaaacacactcacaatATCACAAACATTCACAATCACATCACTGCTGAGCCTTCTGTCTCAGAGAGCCACAGAACTTTGATTAGAAGTGATTCTCCCTCAAAAGATGAAGGCCTTCACTCTCTGATCTTTAGTAACACGGACAATCAGTCACTGTCTATGATGAGTTTAACAGAGAGTTCCCTTATACATGAAGATGAGCTTAATGAAGTTAAAGAGCCTGTAAAGAACAGTCTATCAGATGATTCTCCCCAATCAAGAAATTTTACACATCAGACTAATCTCTGCTTATCACATGAGGAGCCAAGCGAGACGCCCTCAACTTTAGAATCATCAAAGGATTTGAGTGTGACTGTACTTGGTGATGCCATGAACTCTGACTTACTGCACACAGTCCTTCTGCTGTGGATTCTCACCTACTGTATCTTCATGCTGCCTCAGATAGAGACCTGGACACTTTTTTGAAGCTAAAACTGCTTCCAGGAAAAGAAGATGTGCgcaaaatggtaaaaacatagTGCTTAAGGAATACACACTCTGCCTTCAGTATCAACTTCTGGCTGCAGTGTCCTGTACAgcctttcattcattttgagaTCCATCATGGAACCTACTAATAATAACACATATAGAAATGCCTTATTTACATTTCTGTCTGTGCACAAGTACACAGTGGAGTGAAATCACATTCCTCTTagaccatggtgcaacatggaaccaTCAACAAACAGCTCATTGAtgtgttcatatttattttgaaaatatatatatattaaaatattgtaacagACATATTTCCATAGCAATATGCTGTATGTGTTTTGGTCACTctccatgttttatttatacctCATTAATTAAACAGATTTAGACAAGCATTTTTGTATTTGCATGTTCttattaatacacatttaatgCAGCATCTGTACACTTAAATCTAtgcaaaaatgaatttaataatctcttaataaactcttaaaatgttttttgcacATATTTGAGTGTGCAGATGGTTATTTCAAATGCTACCTTTAGCTTTTTCAGCTTCCGCATCTCAGCTGAGTCTTTTATGTTCTTATTAATCACATTTCTTTAAATCTGAAAATTCAGCTttctttaaatgtatattaatagttataaaggaaacatgttgaAAAGGAAGGAATTTCTAGATGGCAGAGCAGACAGGTATTAACAGAAGATTATGTAACCATACAGGCTTCTGTGGGCCAGTCCCCACTGCCCACTGATTCTAAGAATACTCTGCactgtctgtttgtttggagTTTGCCTGTTGGTTCAGGGTCAACAGAATCAATAGCTTTTATCATGGGTGCAAGAAAACAACTTTAGCTGGAGTTTGGACATTCTTCTACAGAATCTTCGAGTAGCAGTGGGTTTCCATTTTTTTGCAAGACTAGATCACGGGTGCAAAATTGCATGACCAGAAAATACTATAATGAGATACATTGCGGTTTATggacaaaaaaatgttaaataatagctctaaaataaacatttctggCACGAAAACACCTCAGGGAAGGTTATGATAAAGTCAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002648597.1 lncRNA upstream 1851 52766038 ~ 52768976 (+) True LOC111188765
TU37260 lncRNA upstream 3099 52764829 ~ 52767728 (+) False LOC111188765
TU37263 lncRNA upstream 5652 52761599 ~ 52765175 (+) False LOC111188765
TU37251 lncRNA upstream 77471 52603946 ~ 52693356 (+) True G27772
TU37355 lncRNA downstream 122456 52904320 ~ 52904678 (+) True G27834
TU37371 lncRNA downstream 247945 53029809 ~ 53030010 (+) True G27849
TU37396 lncRNA downstream 522064 53303928 ~ 53304405 (+) True G27873
TU37398 lncRNA downstream 546008 53327872 ~ 53330777 (+) True G27875
TU37446 lncRNA downstream 717611 53499475 ~ 53504424 (+) True G27903
XM_007252940.2 mRNA upstream 161006 52574938 ~ 52609821 (+) True LOC103032675
XM_007252935.3 mRNA upstream 358747 52403882 ~ 52412080 (+) True LOC103030894
XM_007252934.3 mRNA upstream 358747 52403882 ~ 52412080 (+) False LOC103030894
XM_022678348.1 mRNA upstream 370009 52382945 ~ 52400818 (+) True ddhd1
XM_007252931.3 mRNA upstream 396680 52367883 ~ 52374147 (+) True psmc6
XM_007252946.3 mRNA downstream 3795 52785659 ~ 52789369 (+) True LOC103033541
XM_022662560.1 mRNA downstream 29189 52811053 ~ 52816494 (+) True LOC111188773
XM_022662592.1 mRNA downstream 43320 52825184 ~ 52829284 (+) False LOC103041583
XM_022662601.1 mRNA downstream 43320 52825184 ~ 52829284 (+) False LOC103041583
XM_022662581.1 mRNA downstream 43382 52825246 ~ 52829284 (+) True LOC103041583
TU37261 other upstream 5652 52760113 ~ 52765175 (+) False LOC111188765
trnac-gca_8 other upstream 301984 52468772 ~ 52468843 (+) True trnac-gca_8
TU37199 other upstream 314663 52454431 ~ 52456164 (+) True G27729
TU37134 other upstream 456561 52314025 ~ 52314266 (+) True G27683
TU36920 other upstream 1592453 51174488 ~ 51178374 (+) True G27489
trnah-gug other downstream 840959 53622823 ~ 53622894 (+) True trnah-gug
trnae-uuc_2 other downstream 841318 53623182 ~ 53623253 (+) True trnae-uuc_2
trnar-acg other downstream 841585 53623449 ~ 53623521 (+) True trnar-acg
trnam-cau_5 other downstream 841753 53623617 ~ 53623689 (+) True trnam-cau_5
trnah-gug_1 other downstream 842204 53624068 ~ 53624139 (+) True trnah-gug_1

Expression Profile