RNA id: XM_022662581.1


Basic Information

Item Value
RNA id XM_022662581.1
length 1648
RNA type mRNA
GC content 0.46
exon number 5
gene id LOC103041583
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 52825184 ~ 52829284 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTGAGGGGTTGGTTAATGTTTAAATGGATCAATTTGATTTGCTCAGTTTTTCAGTTCTCTTCAGTCGGTACAGAAGATCCCACTCTTTCTGCTGCTGAAACACTTTTCTATGCAGGCTACAAAATGTGGGGAAGGCTGTACAGCTGTTTCCTGGTTTCTCTCCTGTTAATGGTGGTCTGGGCTGCCCCCCAGAAAGACCACGATCATTCAGAAGACCACCATCAACATCTCCACCATGGTAAGGATGAACCTCACCCCAGCCACGAAGGAGCAGACGATCTGTCCCACAGACTCTCCCCCCACAACGCCGACTTCGCCTTCTCCCTCTACAAGAAGCTCTCCACCCACCCTGAAGCCAAAGGCAAGAACATCTTCTTCTCTCCACTGAGCATCTCCATGGCTCTGTCCATGCTGGCTCTGGGGGCTAAAGGTAACACCCACTCTCAGATCTTCAGCACCCTGGGCTACAGCACCCTCACTCCTGATCAGGTTAATGAAGGGTACGAGCACCTGCTCCACATGCTGGACCACAGTCAGGACGAAATGCTGCTGGAGGCAGGAAGTGCTGTGGCTGTCCGAGAAGACTTCAAGCCCGTCGACAAGTTTCTGAAAGATGTTCAGCATTTCTACCAAGGAGAGGCCTTCACTGTGGACTACTCCAAACCTGAAGTCGCTGTTcaagaaataaacaagtacATCGCCAAAAAGACCAAGGACATGATCACTGACATGGTCAAGACCCTGGACCCACAGACTGTGATGATGCTCATCAACTACATCTATTTCAGAGGTAAATGGAAGAAGCCTTTTGAACAAAGGTTTACCCAAAAAGCCGACTTTCATGTGGATGATAACACCAAGGTGACTGTGGACATGATGCAGAACACGGGACGATACCATTTCTACATAGACTGGGACAATTCCACTTCAATTATAAAGGTGCCCTATAAAGGCAACGCATCCATGATGCTCATTCTTCCTGATGAGGGGAAGATGCAGGATCTGGAGAGGAACATCAGCAAAGATCATATCAAATACTGGCATGACAAATTATCCTACAGAGTCGTGGATTTTTCTATGCCCAAGTTCTCCATCTCTGCTTCCTCCTCTCTTGCGGAGACTCTGCAGGAGATGGGAATGGTTGATGCATTCTTAGACATTGCAGATTTCTCTGGGATCAGTGTGGACACCAAACTGTTGGCATCCAAGGTCCTTCATAAGGCGGTGCTCAAAGTTGATGAGAAGGGCACTGAAGCAgctgctgccaccaccataGAGATCATACCACTGTCAATGCCAAGAACCATCACCCTCAACAGACCATTCCTGGTGTTTATTGTAGAGGACAGCACAAAGAGCATCCTCTTCATGGGCAAAATAAACAACCCGACTGCATAGAAGCAGCCagcacacttttttatttaaagcaacaGCAGATTAAGCAAAAAGCTAATAGAAAATAGTATGTAATATCAGACATCCCAGCTAGTAAACAAGTGTGTCAAATTTGGGGAAGTAACTACCAGACCTGCCAAAGCTCTGAACTAAATATACTGACATGCATGCATACATTTGTACAAACTTTTCTACTGAATGATTTGTGCATAAGCAGTTCTcatcaataaatacattcattacCAAGACACAA

Function

GO:

id name namespace
GO:0030162 regulation of proteolysis biological_process
GO:0010951 negative regulation of endopeptidase activity biological_process
GO:0004867 serine-type endopeptidase inhibitor activity molecular_function

KEGG:

id description
K03984 SERPINA1, AAT; alpha-1-antitrypsin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002648597.1 lncRNA upstream 56270 52766038 ~ 52768976 (+) True LOC111188765
TU37260 lncRNA upstream 57518 52764829 ~ 52767728 (+) False LOC111188765
TU37263 lncRNA upstream 60071 52761599 ~ 52765175 (+) False LOC111188765
TU37251 lncRNA upstream 131890 52603946 ~ 52693356 (+) True G27772
TU37355 lncRNA downstream 75036 52904320 ~ 52904678 (+) True G27834
TU37371 lncRNA downstream 200525 53029809 ~ 53030010 (+) True G27849
TU37396 lncRNA downstream 474644 53303928 ~ 53304405 (+) True G27873
TU37398 lncRNA downstream 498588 53327872 ~ 53330777 (+) True G27875
TU37446 lncRNA downstream 670191 53499475 ~ 53504424 (+) True G27903
XM_022662560.1 mRNA upstream 8752 52811053 ~ 52816494 (+) True LOC111188773
XM_007252946.3 mRNA upstream 35877 52785659 ~ 52789369 (+) True LOC103033541
XM_022662526.1 mRNA upstream 43382 52769242 ~ 52781864 (+) False LOC111188745
XM_022662521.1 mRNA upstream 43382 52770827 ~ 52781864 (+) True LOC111188745
XM_007252940.2 mRNA upstream 215425 52574938 ~ 52609821 (+) True LOC103032675
XM_022662659.1 mRNA downstream 1134278 53963562 ~ 54049416 (+) False epb41l2
XM_022662654.1 mRNA downstream 1134278 53963562 ~ 54049416 (+) True epb41l2
XM_022662728.1 mRNA downstream 1134278 53963562 ~ 54049416 (+) False epb41l2
XM_022662663.1 mRNA downstream 1134278 53963562 ~ 54049416 (+) False epb41l2
XM_022662732.1 mRNA downstream 1134278 53963562 ~ 54049416 (+) False epb41l2
TU37261 other upstream 60071 52760113 ~ 52765175 (+) False LOC111188765
trnac-gca_8 other upstream 356403 52468772 ~ 52468843 (+) True trnac-gca_8
TU37199 other upstream 369082 52454431 ~ 52456164 (+) True G27729
TU37134 other upstream 510980 52314025 ~ 52314266 (+) True G27683
TU36920 other upstream 1646872 51174488 ~ 51178374 (+) True G27489
trnah-gug other downstream 793539 53622823 ~ 53622894 (+) True trnah-gug
trnae-uuc_2 other downstream 793898 53623182 ~ 53623253 (+) True trnae-uuc_2
trnar-acg other downstream 794165 53623449 ~ 53623521 (+) True trnar-acg
trnam-cau_5 other downstream 794333 53623617 ~ 53623689 (+) True trnam-cau_5
trnah-gug_1 other downstream 794784 53624068 ~ 53624139 (+) True trnah-gug_1