RNA id: XM_022662728.1


Basic Information

Item Value
RNA id XM_022662728.1
length 3557
RNA type mRNA
GC content 0.48
exon number 22
gene id epb41l2
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 53963562 ~ 54049416 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTAAGGAGGTGAAGGCAGAAGTGAAAGAGGAGGTGAAGGCGGAGGAGGTGCAAGCAGAGAATAACTCCGTGGGCAGTGTAGAGACACAGCCTGCgaaggaggagaaagagggaACCTCCGCAGAGAAGAAGGGAGAGAAAGGAGGTGAAGAAGTGCAGGAGAGCAGCGTTCTGTCTCCTCTGAAGCTGGGAAAGAAAATGAAGATTGTGGTGTGTCACGTGACCTTGCTGGATGGCACCCAGTTCCCATGTGAAGTGGAGAAACGAGCGAAGGGTCAGTACTTGTTCTTTAAGGTGTGTGAGCATCTGAACCTGCTGGAGAAAGATTACTTCGGCCTGAGCTTCAAAGACAACGCTGACCAGAGGTGCTGGCTAGATCCCACTAAGGAGATCAAACGTCAGATCCGCAATTCACAGTGGCAGTTCGCCTTCAATGTGAAGTTTTACCCGCCTGACCCCTCCCAGCTGACTGAAGACATAACCagGTATCTGCTGTGTCTGCAGCTGAGGCAGGACGTGTCCTCGGGCCGCTTGCCGTGTTCGTTTGTTACCCACGCTCTGCTGGGCTCGTACACACTGCAGGCCGAGCTCGGAGACTATGACCCCGAGGAACAGCGGCTGGACTCCATCGCCGACTTCCAGTTCGCTCCCAGTCAGACCAAGGAGCTGGAGGAGAAAGTGGTGGAGCTCCACAAATCACACAGggGGATGACTCCAGCACAGGCTGATGTTCAGTTTTTGGAAAATGCAAAGAAGCTCTCTATGTATGGCGTCGACCTCCATCACGCaaaggattCGGAGGGAGTGGATATCATGCTGGGAGTGTGTGCTAATGGCCTACTGATCTATAAGGATCGTCTGAGGATCAACCGCTTCGCCTGGCCTAAAATCCTCAAAATCTCCTACAAACGCAGCAACTTCTACATCAAGATCCGACCGGgagagGCGGAGCAGTTTGAGAGCACAGTGGGCTTTAAACTCCCCAACCACCGTGCCGCCAAGAGGGTCTGGAAAGTCTGCGTGGAGCATCATACCTTcttcaggttgacGAACCCGGAGCAGCCCACCAAGTCAAAGTTCCTGACTCTCGGTTCGAAGTTCCGCTACAGCGGCCGGACACAGGCTCAGACGCGGCAGGCCAGCACCCTGATCGACCGGCCGGCACCGTACTTTGAAAGAACCTCCAGCAAGCGCATCTCACGCAGTCTGGATGGAGCTCCAGTGATCAGTGTGAGTGATCATGGCCACATGCTGGATTCTGCACGCACCCCCGGCTCTGGAGAGAATGGACATGACCCCGCCCTCGAGCTCTCATCTGACTCAAAGAGTCCACAGGTGGAGGAAGAGGCGGAGCCTGGCAAGGGCGCGGTAGCCGGCGCAGTCCCAGCAGAGCTACCGTTTGAGACCGGAACAGACGGAGCTGATTCCTCTGAAACTAAGAGCAAGCTGAGAGTGCAGGGAGAGAATATATATGTGAGACATAGCAATCTAATGCTGGAGGATCTGGATAAGACTCAGGAGGATGTTTTGAAGCATCAGGCTAGCATTAGCGAGCTAAAGCGCAGTTTTATGGAGGCGGCTCCAGAGCCCCGGCCCAGTCAGTGGGAAAAGCGTCTGACGGGCAGTCCCGCTACCGGCCTGCGACTGCAGGCGCAAGGGagtttagAAGAGGAGTTAACCTCTCTGTTTTTGAGTAAAGCCCGTTTCACTGGCCTGGCTGCTTCCTACAGTACcgctgctgctccagcagagAGCGCTGTCACTGCATCCTCTGAGAAAGGCAACGTCCACCTCGGGACCGTCTCATCTGCTGAGAGCAGGAACATCGACCAGCCCCCGGTGGTGAAGACTGAGATGGTGACCATTTCAGACACGTTTGCAGCTCAGAAAACCGAAATCGCCACCAAGGAGGTTCCGATCGTTCACACAGAAACTAAGACCATCACTTACGAAGCAGCCCAGtTGGACGGTACTGGAGATGGAGAGCCAGGCGTTCTAATGACCGCCCAGACCATCACCTCAGAGTCACTGTGTACGACTACAACTACTCACATTACCAAGACACTAAAAGGCGGGCTGTCGGAAACTCGAATTGAAAAGCGCATTGTCATTACTGGCGACTCGGACATCGATCACGACCAGGCCTTGGCCCAGGCCATAAAGGAAGCCAAAGAGCAGCACCCCGACATGTCTGTCACCCGTGTGGTAGTGCACAAGGAGACTGAACTGGCCGAGGATGATGATTAGAGGAGAGagctgaagcCTGTAAGGTTCGTCTTTCGCCTCATTCGGATGGACCTCTTCCCTCCGTTCTCTGTATGAGTAAACGAGTGTTTGTCTCTCGGGATGGAGGACAAGAGAAGACCTCAGTGATGACAGCGCTTCGGACACCCGCATTTGTTATCGTTCAAGAAACAGAACCACTtagctaacttttttttgtagcgtgtttattattgatgtttTTATCCCCCAGAAAGTTGTCcgatgtttattaagaacagatagCGTTTGCTctacaattctttttttttttttattattgttatagcAGTGATTCACATTCCTAGCACGTTCAGAGGGGGACAGATCTGGAGAGGGTAAGCTTAAAAAGATGAATTTTTACAATCCAGTCATAGTGGATTTCTATTAGCTATGAATGAAcactttgtaaaataaaataaaataaaaactaggtGGGCGGTCTATTTACAtgcatattaaaaatgatttatgatCTCTGAGCGTTTTGTAAGGGGATAGGGAGGGTTTAATGTTGGTCAGGAGAAGGGGCTCGACTTCAGATTAACGTATTCATAATCTCTTCTTAAGGGACCAGCTTGAGACTCGGAGGCACGGTTTTTATTTCCTCTACTTGCACAACAGTGCCAATCCTTCCTCTATGcagtcaaacaaacaaacaaacacacaaacattccACCACTGGGAGGTGCACTTTGTCTACCTCTTTTAgggaaaatatgtaataaaaactccattaaaaaatccagaaaaaaaaaagaaaaattcttaAAACTCTGGGCagctttttaacacattttgcttTTCCTACACAAATTTCTGATACCAATAATCAAAAGATTATTTTCTCTGATATTTTAATGAATTCTGTCTTGTGTGTAAACAGATCATTTTAGACCTTTTTTGAATGATCTAGGTTTGTTTTCCccccttttaaatatttttaatatattctgatctttttttttttttttttttgatgaaaagcaaaagaaaaaatgggtTTGCCACAGTGGGATTATTGTACATGTAGATAAATCAATGAAGCTCCTCCCTCTCTGGCCTGGTACCAGTgctatcttgctctctctctcatactatCTCTCTTGTATTCTTGCTTTTATTTCTCTAAATAGCCCCCCTTCTATTTGCCGCTAACCAGAGGCGCCAATCGCACCCCTTCGTTTTTAGCAGCTTGagtaattgtgtaattgtgtttttggccccgcccacctacCATCACCTCCTGTCCTCTTTGTGTaacactgtttaaataaaagtttgtttATTCTCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37593 lncRNA upstream 26207 53917793 ~ 53937355 (+) True G28022
TU37565 lncRNA upstream 95914 53836053 ~ 53867648 (+) False G27996
TU37563 lncRNA upstream 123912 53742964 ~ 53839650 (+) False G27996
TU37646 lncRNA downstream 234635 54284051 ~ 54301420 (+) True G28068
TU37644 lncRNA downstream 352464 54401880 ~ 54403855 (+) True G28066
TU37739 lncRNA downstream 369967 54419383 ~ 54420330 (+) True G28146
TU37763 lncRNA downstream 474599 54524015 ~ 54524290 (+) True G28164
TU37796 lncRNA downstream 480377 54529793 ~ 54533491 (+) True G28193
XM_022662592.1 mRNA upstream 1134278 52825184 ~ 52829284 (+) False LOC103041583
XM_022662601.1 mRNA upstream 1134278 52825184 ~ 52829284 (+) False LOC103041583
XM_022662581.1 mRNA upstream 1134278 52825246 ~ 52829284 (+) True LOC103041583
XM_022662588.1 mRNA upstream 1134278 52825246 ~ 52829284 (+) False LOC103041583
XM_022662560.1 mRNA upstream 1147068 52811053 ~ 52816494 (+) True LOC111188773
XM_022662778.1 mRNA downstream 217968 54267384 ~ 54399891 (+) True scara5
XM_022662784.1 mRNA downstream 384307 54433723 ~ 54455524 (+) True LOC103031746
XM_022662787.1 mRNA downstream 384307 54433723 ~ 54455524 (+) False LOC103031746
XM_007255370.3 mRNA downstream 615992 54665408 ~ 54689752 (+) True LOC103038902
XM_007255371.3 mRNA downstream 615992 54665408 ~ 54689752 (+) False LOC103038902
trnas-aga_8 other upstream 309832 53653649 ~ 53653730 (+) True trnas-aga_8
trnas-aga_7 other upstream 310624 53652857 ~ 53652938 (+) True trnas-aga_7
trnas-uga_10 other upstream 310973 53652508 ~ 53652589 (+) True trnas-uga_10
trnal-cag_6 other upstream 311345 53652135 ~ 53652217 (+) True trnal-cag_6
trnas-uga_9 other upstream 311534 53651947 ~ 53652028 (+) True trnas-uga_9
TU37650 other downstream 328825 54378241 ~ 54379306 (+) True G28072
TU38445 other downstream 2183323 56232739 ~ 56239729 (+) True LOC103029514
TU38475 other downstream 2241340 56290756 ~ 56303210 (+) False LOC103033217
TU38502 other downstream 2287764 56337180 ~ 56399441 (+) False sipa1l1
TU38768 other downstream 3352509 57401925 ~ 57402392 (+) True G28865

Expression Profile