RNA id: XM_022662778.1


Basic Information

Item Value
RNA id XM_022662778.1
length 2656
RNA type mRNA
GC content 0.51
exon number 10
gene id scara5
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 54267384 ~ 54399891 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tctctctctctctctgtgtaagtaaaaggacagcagcagcaggaggaggagagaaaaaggTCTGAGGGATGTTTTGGATGTTTTGAGCATCTTCTGGACTGAAGAGACTGAAGAGCTGCTGAGCTGCTGAAGGTCCTGAATGGAGAACAAGGCGATGTACCTGAGCACGTACGAGGAGCGGGATAATGGCTCTTTCTATGAGGAGGGCTATGAGGGCCGGAACCTCTCCAAACTCAACCTCTGTGAGGAAGTGGGCTCCGGAAGCCGCAGGAGAAAGACAGACAACTGCTGTGGACACTTGGACTCGTTGTCAGCCATCAAATATGCCATTGTTTCTCTCTATATCCTGGTCCTGCTGAGCATTTTCGGCTTATGCATTGCAGtgtccaGGACCCAGGCCTCCTCAGAGAAGCAGGAGGCTCTGCTGGAGAATGTGACCCGTCTGGGCGACCGCTCCGAGGCCCTGCAGGAATCTCTGGGCCAGCTCCCCTCCCAAAGCGACCTCCTGGAGAACATCTGGAAGCTCGAGAGCCTCTTTCACAACCACAGCgaggagctgcagcagctggGGCGTCTGGTGCAGGGTCTGGAGCGGGACGTGCGTGATCTGCAGGCTCACGCTGAGCACATGTCAGGCTCTATGGCAGAGATGGAGGAAAACTTGGGCACAGGCAGCCTGTCCAGCtggagcaacagcagcagcctgGGAGCAGCCCTGGCCCACGCAGCCGCCTCCATCCACAGCCAGGACACCATGCTGCGGGAGACGGCGGGCCGCGTGGACAGCCTGCGGGAGCGGCTGGAGGAGGTGGGCTGGACTGTGGGGTCCATCAACCACTCGCTCAGCAGCGACGTGGACGTGCAGCGGCTGATGACGGAGCAGCTGCAGGTACAGCTCGGCAACGTGACGCACGACACCATGAGCATGAAGGTCATGCAGATCCACCTGGAGGAGCAGATGAAGAACGAGATCGAAATCCTCAGCGTTATCACTGAGGACCTGAGGCTTAAAGACTGGGAGCATTCCATGGCACTGAAGAACCTCACCATTATTGAGGGCCCACCAGGACCAAAAGGTGATAAGGGAGATGTGGGGCCTTTAGGACCTGCAGGACTGCCCGGCCTATCAGGTTTAAGAGGTTTACCAGGGGAAAAAGGTATCCAGGGTCCTCGGGGGCTTTCTGGTCCAGGCGGTACTGATGGTCAAAGTGGGGAGAAAGGAGATATGGGACCTCCGGGGCCCAAAGgccagagaggagagagaggactCAAGGGAGAGAAGGGCGATCGAGGTGGACAAGGAGATAAAACAGtggaGAACTCTCTGGTGCGGTTGGTGAACGGCTCTGGACCTCACGAGGGCCGGGTGGAGGTGTATCACGAGAGCCGCTGGGGGACAGTGTGTGATGACGTGTGGGATAAGAAGGACGGAGACGTGGTGTGCAGGATGCTGGGATTCCGCGGAGCAAAAGAAGTTCACAAAACCGGACGATTTGGACAAGGTACTGGTCTGATCTGGATGGACGATGTTGCCTGCATTGGTACTGAGGACACCATCCATCAGTGCAAGTTCTCTGGCTGGGGCAAAACCAACTGCGGTCATGTTGAGGACGCAGGGGTGACCTGCAACACTTAACCCTTCCCTACCCTCCTTCATCCTGCCCTGTGTTTTTGACTGATCTACCTATAGGACTGCAGCACGGCAGCTGATTGGCTGGGAAAGATCAAAGGGGAGGTGTCACGCTCTTCTCCAGGACATCACGGGCTAAATGGACCTGACAGTTTGTGAAAGCTTGGCTCGGGCCGGGGGTTGTTGAGGGGCAGTGAGGTCAGAGAGTTTTCCTGGCATGCTGGCATCACCTCAACCTACACACTGCCAACTGAAACAGCACAGGGCAAACACGCTGGCATGAGAACACTTAGAGTCTTCACAAAGAAACCAGCAAACGCCCTGCATTTCAAACAGAGGGAACAGGAGCATACGGACCAATGTGCCTTTTTACGTAGTTTTTGGTCATGAGCGAATAAACATGTTTCCGGCGCAGCTAGAAATGCCACTCTGCCTGAATAAGGTtgggaatatgtgtgtgtgtgtgtctgtgtatatatgtgtgtgtgttagggttaAAACTAGGGCTGCCCTCAATTCAGGCTGGATTTactacacagcaaattctggACTTTGGAATAAACTTCCTGAGAGTTAATATCgactcattttaagtgtatatgagTGACCATCGAATACACTCTATAACAGAGTTAGTAACTCTTTTTTTGGGAGTTGGCCTTTTTAACTCTGTTTAGGAGTAAAATCTAAACTGTTATGGGAGTTTtactagagtaaaatacagctctcagctgtATTTCAACTCCTTTACAgaaaaatgtgtgttattaaactaatattattaaaaacattgtaattttttaaaaccctggaacatttaggagaaaaaatgacaacaaaaagcatcattactgattaaaataacaaattcATACTCAAAAAGTGTAAGCTAGTGTATATTtgcattgcagttctcagtGTACTGCCAGCACTTTGCCACACTTAACAGGgcagaagatggtaacttgctcttatagccaacaacacatcGGCTAGGCATACAATCAttatattaacccttgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37626 lncRNA upstream 219702 54046100 ~ 54047682 (+) True G28050
TU37625 lncRNA upstream 235470 54030305 ~ 54031914 (+) True G28049
TU37593 lncRNA upstream 330029 53917793 ~ 53937355 (+) True G28022
TU37565 lncRNA upstream 399736 53836053 ~ 53867648 (+) False G27996
TU37563 lncRNA upstream 427734 53742964 ~ 53839650 (+) False G27996
TU37644 lncRNA downstream 1989 54401880 ~ 54403855 (+) True G28066
TU37739 lncRNA downstream 19492 54419383 ~ 54420330 (+) True G28146
TU37763 lncRNA downstream 124124 54524015 ~ 54524290 (+) True G28164
TU37796 lncRNA downstream 129902 54529793 ~ 54533491 (+) True G28193
TU37797 lncRNA downstream 135038 54534929 ~ 54537760 (+) True G28194
XM_022662659.1 mRNA upstream 217968 53963562 ~ 54049416 (+) False epb41l2
XM_022662654.1 mRNA upstream 217968 53963562 ~ 54049416 (+) True epb41l2
XM_022662728.1 mRNA upstream 217968 53963562 ~ 54049416 (+) False epb41l2
XM_022662663.1 mRNA upstream 217968 53963562 ~ 54049416 (+) False epb41l2
XM_022662732.1 mRNA upstream 217968 53963562 ~ 54049416 (+) False epb41l2
XM_022662784.1 mRNA downstream 33832 54433723 ~ 54455524 (+) True LOC103031746
XM_022662787.1 mRNA downstream 33832 54433723 ~ 54455524 (+) False LOC103031746
XM_007255370.3 mRNA downstream 265517 54665408 ~ 54689752 (+) True LOC103038902
XM_007255371.3 mRNA downstream 265517 54665408 ~ 54689752 (+) False LOC103038902
XM_022662845.1 mRNA downstream 427733 54827624 ~ 54843995 (+) True tdrd15
trnas-aga_8 other upstream 613654 53653649 ~ 53653730 (+) True trnas-aga_8
trnas-aga_7 other upstream 614446 53652857 ~ 53652938 (+) True trnas-aga_7
trnas-uga_10 other upstream 614795 53652508 ~ 53652589 (+) True trnas-uga_10
trnal-cag_6 other upstream 615167 53652135 ~ 53652217 (+) True trnal-cag_6
trnas-uga_9 other upstream 615356 53651947 ~ 53652028 (+) True trnas-uga_9
TU38445 other downstream 1832848 56232739 ~ 56239729 (+) True LOC103029514
TU38475 other downstream 1890865 56290756 ~ 56303210 (+) False LOC103033217
TU38502 other downstream 1937289 56337180 ~ 56399441 (+) False sipa1l1
TU38768 other downstream 3002034 57401925 ~ 57402392 (+) True G28865
TU38889 other downstream 3410104 57809995 ~ 57812488 (+) False LOC103042006

Expression Profile