RNA id: XM_022662784.1


Basic Information

Item Value
RNA id XM_022662784.1
length 2367
RNA type mRNA
GC content 0.50
exon number 7
gene id LOC103031746
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 54433723 ~ 54455524 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GATAACACTTCATTGTGAGAGAGACACGCCGAGgagagcacacacactcacagcctCACAGCTACACACACCCACAAGCTCTCTACCAGTGGCTGAACACTCAAACCAGGGAACCCGCCTCCTCAGACACATTCAACACTTTCCACAAGCAGTGGGTGATACAGTGGAAACCTGAAGACTGACAGTGGGAGGGAACAGAGGATTCCCCATCAAGACAAAAAGGAGGAGGTGGCAGCGCGGGACTGTCATACCCACACAAACTGACGAGACTTCTCAAGGAGATACACGTCTGACAAGAGAAGAGGAGCACCTTGACTTACTTAGTCAATGAACTACTAGTCTAAGGGTTTTTTTAAGGGTTCAGTTCTGGAAGTCCACCTCTTTTAGGACTCTATCATGGACCGCCTGCAAAACAAGATGAAGTTTTTCCTGAAGCTGGGCTACTCCCACTCAGACATCCTGAGGGTCCTGCAGAGCCTTCAGCATGATGCCCCAACCAACGACATCCTAGAGGAGCTCATCAAGACCTGCCGGACCCCCACAGGCACAGCACAGCCTGGGCCAGAGAGAGTGACCAGCAGCCAGAGcagcagcCCAAAGCTCATCCCACGAGGTTGCAGCTCCCCTCAGACACACATCCAGATGGACACACACAGCCAGCGACACACACAACTTGACACACAGACCTCCAGCCCTTTCAGGTCTGTGGTTATCGATGGGAGCAATGTGGCTATAAGCCACGGGAACAAGCAGGTGTTTTCCTGCCGGGGGATCGAGCTCGCCGTCCAGTGGTTCTGGAACAAGGGGATTCGTGACATCACCGTATTCGTGCCTCTGTGGAGGAAAGAACAGTCGAGACCAGAGGCTCCCATCACAGATCAGCACATCCTCAGGCAGCTGGAGAACAGGAACATCCTGGTGTACACGCCGTCTCGCTGCGTAAATGGTAAACGGGTCGTGTGCTACGACGATCGCTACATCGTCAAGCTGGCCTACGACTCGAATGGCATCATCGTGTCTAATGACAACTACCGTGACCTGCAGGTGGAGAAGCCCCAGTGGAAGAAGTTCATTGAGGAGCGGCTGCTGATGTACTCTTTTGCTAACGACAAGTTTATGCCACCTGATGATCCACTAGGAAGGAACGGACCAACAATTGAAAACTTCCTCAGGAAGAAGCCCATAGGACCAGAGACCAAGCAGCAACATTGTCCTTATGGGAAGAAGTGCACATATGGTGTAAAATGCAAATTTTACCACCCAGAGCGCTCCAACCAGCCTCTGATGTCTGTAGCAGATGAGCTCAGAGCGAAGAGTCAGCCAGGTTGTGAAACAGAGGACTTCCCTCCCtctacacacttcacacacacaaactgcaaCGCAACCACAGCGCTTCCTTCAGCAGCTTACCAGGACGAGCTAACTCGAGCCCTGTCTGGACTTGACCTCTACAGCGGCCCATGTGATAGACCCCCCTACCTGCAGAAGTCAATGCTGAATGCCAAAAGCTCAGAGTCCCGCCTCTATCTCAGTGACTCCGCCCTCCAGACATCGATGGCCTTCAGCAGCGGATACATGTCGAGTAACGGGTTCGTGTCCGGCAGCGACGGCGATTGCTTCTCATCTGGTGGTGCTTTAATGGAACAAAGACGTGCACACAGCCCTGATCTATACAAACGAGCGCATCACCCAGGCCTGCACACACTTTCAAACTGCCAACACGCTCACTCAGATTTAGGCTTAAACTACGCTCACACTCCGCATTCACTGCACAGATACCAGCCCCGCAGCTCCTGCAACAACACAGCAACCCCGCATTTCAACGAACCCTTACCTTTCCATAACGCACTGCTCAGGCAAGCTTCCCACCCCAGGCCGGCAGAGGTCAGCTGGGGTCACGGGCACGGCGAGGTCAGCAATTTCGAGGCTACGGACAGAAGGAAAGACGTGAGGTCTCAGCTCAGTACCATCTTCCCTCAGAGTACAGTGGACCAGGTTATGAGCCTGTATCCACACACACTGGACACAACTGAACTGGTCACACTGATCCAGAAATACAGGAATAGCCACTTGCTGTAAAGccaaaaactgtcattttttgttttttgttttattattgtagcAATATAAGCTTGCATCAACGAAGtggtaaaaaaatgtaaatgcagtcTATCTAATGTCTATCTAAATTTCAGCCTGAAACTATCCGTGCACATCTCTATGGATTGTCCGATAGACACTCATTGACAAAATGCACCAACAAGAATGAAATGTTGCAGATAAAGAAAActttatatgtttaaatgtaatgatAGCATATGTgatatatgcagctctggaaaaaatgaagagaccacttcagtttct

Function

GO:

id name namespace
GO:0030098 lymphocyte differentiation biological_process
GO:0042110 T cell activation biological_process
GO:0030163 protein catabolic process biological_process
GO:0009056 catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0030217 T cell differentiation biological_process
GO:0046649 lymphocyte activation biological_process
GO:0044248 cellular catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0045321 leukocyte activation biological_process

KEGG:

id description
ko03050 Proteasome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37739 lncRNA upstream 13393 54419383 ~ 54420330 (+) True G28146
TU37644 lncRNA upstream 29868 54401880 ~ 54403855 (+) True G28066
TU37646 lncRNA upstream 132303 54284051 ~ 54301420 (+) True G28068
TU37626 lncRNA upstream 386041 54046100 ~ 54047682 (+) True G28050
TU37625 lncRNA upstream 401809 54030305 ~ 54031914 (+) True G28049
TU37763 lncRNA downstream 68491 54524015 ~ 54524290 (+) True G28164
TU37796 lncRNA downstream 74269 54529793 ~ 54533491 (+) True G28193
TU37797 lncRNA downstream 79405 54534929 ~ 54537760 (+) True G28194
TU37799 lncRNA downstream 82244 54537768 ~ 54538463 (+) True G28196
TU37801 lncRNA downstream 139950 54595474 ~ 54643428 (+) False G28197
XM_022662778.1 mRNA upstream 33832 54267384 ~ 54399891 (+) True scara5
XM_022662689.1 mRNA upstream 384307 53963562 ~ 54049416 (+) False epb41l2
XM_007255370.3 mRNA downstream 209884 54665408 ~ 54689752 (+) True LOC103038902
XM_007255371.3 mRNA downstream 209884 54665408 ~ 54689752 (+) False LOC103038902
XM_022662845.1 mRNA downstream 372100 54827624 ~ 54843995 (+) True tdrd15
XM_022662846.1 mRNA downstream 389728 54845252 ~ 54880390 (+) True igf2r
XM_015607401.2 mRNA downstream 556058 55011582 ~ 55155449 (+) False afdn
TU37650 other upstream 54417 54378241 ~ 54379306 (+) True G28072
trnas-aga_8 other upstream 779993 53653649 ~ 53653730 (+) True trnas-aga_8
trnas-aga_7 other upstream 780785 53652857 ~ 53652938 (+) True trnas-aga_7
trnas-uga_10 other upstream 781134 53652508 ~ 53652589 (+) True trnas-uga_10
trnal-cag_6 other upstream 781506 53652135 ~ 53652217 (+) True trnal-cag_6
TU38445 other downstream 1777215 56232739 ~ 56239729 (+) True LOC103029514
TU38475 other downstream 1835232 56290756 ~ 56303210 (+) False LOC103033217
TU38502 other downstream 1881656 56337180 ~ 56399441 (+) False sipa1l1
TU38768 other downstream 2946401 57401925 ~ 57402392 (+) True G28865
TU38889 other downstream 3354471 57809995 ~ 57812488 (+) False LOC103042006

Expression Profile