RNA id: XM_022662981.1


Basic Information

Item Value
RNA id XM_022662981.1
length 4011
RNA type mRNA
GC content 0.42
exon number 10
gene id LOC103047723
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 55467126 ~ 55481255 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACAAGAATTTAGCATGTTTTTCATTCGAGTCTTCAAATAGAAAGTTCTCACAGGCACACTGGTGTAAGTCTACAGCAGGAGCCGGGTAGAGTAAGCAGATCACCTGGACACAATGAAGTCCTTCTTTGGGTTTTTTCTCTGCTGCCTCTGGTTTCTCCTGCTGGATATCTCTGCAAGCTACAATCTTAATAATCCATCGCCGATTTTAGCTCAGAGTTATGCGCAAAGAAGAAATTATGGGAATCCACCAAATTCCAAACCACCACAGAGGACACTTAACCCAGCAGTGCACACCAGACATTATAGGTTTAATGGGCTCCACTATCTTCACAAAGACCAGCCAATGATGTTGCCACAGTTGGCAGCCTATCCTGGAGCCACCAGTCCTTCTCCAGCCAAGCGCTATGACTGGAAAAAAGACTTTTCACTGTTAGACAAAAAGGCAAAGCAGCAGCTGAAAGGTGAATGGGCACCAGTAGTTTGTCGCAAGGCACCCGCTCCTGAAGAATCACCTGCAGGTTCTCAACAACACGTTAAAGGACAACCACTTGCAGTTCAAGGACAATCACTTTCAAGTCCAGAAGATTCACATGCAGTTTCGAAACAATTAAGGATTGATTCAGAACAACCAAGGGTAGTTCAAGAACAATCACTTGTAGTTccagaagaaacaatgatttATTCAAAACCATTAAAGGCAGATACAGAACAATCACATATAGTTCTAGAACAATCAAATGTAGGTTTAGACCAATCAAGGGTAGATTCAGAACAAACAAGAATAGTTCTAGAACAATCACATGCAATTCCAGACAAAACAAGGGTTGATCAGGAACAATTTTCAGAACAACCAAGGGTAGTTATTGAACAATCAAGTGTAATTCCACAAGAAACAAGGGTAGATCTAGACAAATCAATGGTATTTATAGAACAATCACATGTAGATCTAGAAGAAACAAGTGTTGACCCAGAACAGTTTGGAAGAGATGGAAAACAAACACATGTGTTTTCAGAACAATCAAGGGTTGATCCACAACAACCAAGAGTAGTTTCAGAACAATCACATGTTGTTCCAGAAGAATCATGGGTAGATTCAGAGCAACCAACAGGTGTTCCAGAACATCCCAGGGTAGATCCAGAACAATCCCATGTACTTCCAGAACATTCTAGAGTAGATCCAGCACAATCATTCGGAGTTACAGATCATTCCAGGGTAGATCCAGAAGAATCACATGAAGTTCCAGAACTGTCATTTACGGATCCAGAGAAATCTTTTGTAATTCAGTCACCTGTAGATCCAGAACAATCACGAGCAGGTCAAGTACACTCACAGGCAACACCAGAACAATCATTTACTGAACAACCAGTAGTGGTAACTACAGCACCAGTGACAACATCTTCCCCTGTTTACCCTCGGACCTGGGTAAGCTCAACAATGCTGCCAAATCTCTGGCAGCCAAAACCAACTCTGACACCAGAACTGTACCCAGAAGCCACCTCAGCCCAGTCTTTACCAGCGTCCACACTGTCACCACAGCCGTATCCTCACATGCCCTCAGTCCAGCCACAAGCTCCAGGTGGAGCACAAGCTTCTGATTCCCAGTGCAGGAGCCGCCCACTGGATCTCGTGTTTATCATTGACAGTTCTCGCAGCGTGCGACCAGGTGAGTTTGAGAAGGTCAAGGTGTTCCTGTCGAACATGGTGGACACACTGGACATTGGTACAGATGCCACCCGGGTTGCTGTGGTGAACTACGCCAGCACTGTCAAAATCGAGTTCTTCCTCAAGGACCACCTCAAGAAGGACAGCATAAAGCAAGCCATCAGCCTCATCGAGCCCCTGGCCGCTGGCACCATGACCGGCCTGGCCATTAAGAAGGCCACGGATGAAGCCTTCACTGAGAAATCAGGAGCGCGGCCCAAGTCCAAGAAGATCTCAAAGGTGGCCATCATTGTCACAGATGGGCGTCCTCAGGACCAGGTGGAGGAGGTGTCTGCTGCAGCTCGGGCCGCAGGAATCGAGATCTACGCTGTGGGAGTGGATCGGGCTGACATAGTCTCGCTGAAGCTCATGGCCAGCAACCCCCTGGAAGACCACGTCTTCTATGTAGAAACCTACGGAGTCATCGAGAAGCTCACCTCCAAGTTCCGGGAGACTTTGTGCGGTGTAGACTCCTGTGAATTGGGGCATAGCTGTCAGCACATCTGTGTTGGAAACGGTACCTTCTATTACTGCGTGTGTCGGCGTGGTTACGTCTTGAACGAAGACAAAAGAACATGTTCTATTGCCAATGGTGGTGTGGGAAACAGAGGAACCGGCAGTCAGCAATTTACAAACAACAATGGCCACAACGATGGTGAAAGCAGTGCCAGTGCGGATGCCTGTGCTCTGGGTAATGACTGTCAGCACACTTGTGTGGGCAGCGGCTCCTCCTATTACTGCACATGTCCCCCTGGCTTTGTCCTGATGGAGGATAAGAGATCATGTTTCAAGgccaatgatgatgatgaaggggGTGACACTAGTGCCAGTTCGGACCAGTGTGCGATGGGGCACGACTGTGAGCACATTTGCATCAGCACTGATGGCTCCTATCGCTGCAAATGCCGGATGGGCTTTATCTTGAATGAAGACAAGAAAACATGTTCACGTTCGGACCAGTGTGCGATGGGGCACGACTGTGAGCACATTTGTATCAGCAGTAATGGCTCCTATCACTGCAAATGCCGGATGGGTTTTGTCTTGAATGGAGACAAGAAAACATGTTCAAAGGTAAAAGTGGAGATAGTGCAAGATCCATGTCTGTGTGAAGCCAGACTGGCCTTCCAGAGGCAGACACAAACCTCTATCCAGAACATCAATTCCAAACTAGCTGATGTCACCAGAAAAGTCGAGCAAATGGAAAGAATGCTGGCTCGCATGTAACAGACCATGCTTTGGTCATCCTGACATTGTGAAGCTTCAGCTACCTGCTCTGCTCTATGGACCACTGAAGCGGAGGTAAACTCGCCATTGCTCCTCTGTTTCATCAAATCAGCATGACAGACAacccagaagaagaagaagtttcAAGAACTGATACTCCTCCTTAcccaaaaaagacaaacaagagaaaaacatgtacaagAATACAAATACACCTATCTGTGTTTTGTTTAATCCACTAAGAGTCTGAGGGCAACATGGAAGAAAGGTTAATCAaatcattgttttgtttttattttaagctatGGCTGCACATAgaatttcagcatttttttttgcaaatgtacGTATTATTCTGCACAAAATTCACATCACAGACATGCAAtgtcaaattacaaaaaaaaaaaaaaaattaagctgcTTGATACAATAGGGAAATTCTCATTTCTGTGGCATATTTatcagacagattatatctaccATAACAATATGTATTTTTCTCACTGACTTTTGGTAAATACtggtgaaatatatttttaaaaatcattttaatttctgttttaatatGGGAATCTTTATTGTAGCCAAAAGTGACATTGCTATGTcagttttttccaatattgtgcagcctttttttaagtttaccacacaaatctaaatctaaagtgATTGTAGAGAATGGcaacaatcacaatatataaaaGGTACAGTTTTAGAGGCTAATACAATCTCCAATACGTGTGAGGCTGTCTGGTcttttagaaaatatttaacaaatgcaataaataaGCAAACTCATATAAAGTAccctatatatacacaatataaacattattttattattattattattattgtttcatttagttatgaatatgctttaatatatttgtatcttTTGCTGCATGttttacacttatttatcaCTCTTTTTGTGGAATAGTATTTTATAGATGATTGTAAGTTAACTTAATAGGATTTTTTGAAATTTTAGAGTCTATGGAGTGAGCATTATATGCTGTAATATCTATTATTTACCTGTTGATAAAAACTGAAGAgacaataaaataatcatattcAGCATA

Function

GO: NA

KEGG:

id description
K19467 MATN; matrilin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38061 lncRNA upstream 1843 55462075 ~ 55465285 (+) True G28362
TU38058 lncRNA upstream 7828 55458993 ~ 55459300 (+) True G28361
TU38042 lncRNA upstream 77120 55380604 ~ 55390008 (+) False LOC103023616
TU37988 lncRNA upstream 302109 55163794 ~ 55165019 (+) True G28302
TU37986 lncRNA upstream 304172 55162490 ~ 55162956 (+) True G28300
XR_002648716.1 lncRNA downstream 2251 55483506 ~ 55487476 (+) True LOC111189292
TU38151 lncRNA downstream 60994 55542249 ~ 55564694 (+) True G28417
TU38222 lncRNA downstream 413369 55894624 ~ 55952107 (+) False G28460
TU38223 lncRNA downstream 468372 55949627 ~ 55960470 (+) True G28460
TU38383 lncRNA downstream 617408 56098663 ~ 56100801 (+) True G28588
XM_007253914.3 mRNA upstream 24989 55432080 ~ 55442139 (+) True lin9
XM_007253916.3 mRNA upstream 41461 55407374 ~ 55425667 (+) True parp1
XM_015607044.2 mRNA upstream 63798 55380720 ~ 55403330 (+) True LOC103023616
XM_015607051.2 mRNA upstream 156034 55308153 ~ 55311094 (+) True LOC103035140
XM_007253924.3 mRNA upstream 170678 55266088 ~ 55296450 (+) False LOC103024560
XM_007253908.3 mRNA downstream 14851 55496106 ~ 55510485 (+) True LOC103047102
XM_007243166.3 mRNA downstream 50432 55531687 ~ 55539084 (+) True slc35f6
XM_022663014.1 mRNA downstream 59779 55541034 ~ 55559716 (+) True LOC103045772
XM_022663011.1 mRNA downstream 59779 55541034 ~ 55559716 (+) False LOC103045772
XM_022663020.1 mRNA downstream 60029 55541284 ~ 55559716 (+) False LOC103045772
TU37650 other upstream 1087822 54378241 ~ 54379306 (+) True G28072
trnas-aga_8 other upstream 1813398 53653649 ~ 53653730 (+) True trnas-aga_8
trnas-aga_7 other upstream 1814190 53652857 ~ 53652938 (+) True trnas-aga_7
trnas-uga_10 other upstream 1814539 53652508 ~ 53652589 (+) True trnas-uga_10
trnal-cag_6 other upstream 1814911 53652135 ~ 53652217 (+) True trnal-cag_6
TU38445 other downstream 751484 56232739 ~ 56239729 (+) True LOC103029514
TU38475 other downstream 809501 56290756 ~ 56303210 (+) False LOC103033217
TU38502 other downstream 855925 56337180 ~ 56399441 (+) False sipa1l1
TU38768 other downstream 1920670 57401925 ~ 57402392 (+) True G28865
TU38889 other downstream 2328740 57809995 ~ 57812488 (+) False LOC103042006

Expression Profile