RNA id: XM_022663020.1


Basic Information

Item Value
RNA id XM_022663020.1
length 4691
RNA type mRNA
GC content 0.47
exon number 15
gene id LOC103045772
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 55541034 ~ 55559716 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gttagcctagcctagcttagcctagcttagctttagatAAACTCTTAGAAATGAATGGTAGCTGGACCTGCGGACGAGCAGGATAACGAGTTAAACATGCCCGTGCCTGACAGCGGAGAGCAGCCGCAGGGCTTTACATGCAGAACAAGAAGTGAGGAGTTGCAGCACTGATGTTGATGCTGGTCACCTCTGGGCGTGCTCAGTCCACACTTGAGCACTAAGATGAGTGGAGCAGCGGAACAGGCTGACATACTGTCAGTTGGAAACGTAGTCCGAGAGCGATGGAGAGTGATAAAGAAGATTGGTGGCGGTGGCTTTGGTGAGATATATGAAGTGCTGGACCAGCTGAACCAGTGCAATGTGGCACTTAAAGTGGAATCTGCCCAACAACCCAAACAGGTCCTGAAGATGGAGGTAGCTGTCCTAAAGAGACTCCAGGGTAAGGACCATGTTTGCCGCTTTGTTGGTTGTGGACGTAACGACCGATTCAACTATGTGGTGATGGAACTTCAGGGAAGAAACTTGGCAGATCTTCGGCGCACTATGAGCCAAGGTACATTCTCTGTGTCCACTACCCTCAGGCTTGGCAGGCAGATTCTGGAGGCCATTGAGAGTATCCACTCAGTGGGCTTCCTCCACAGAGACATCAAACCGTCCAACTTCGCCATGGGCCGCTTGTCTAGCACTTGCCGAACCTGCTACATGCTTGATTTTGGTTTGGCACGCCAGTTTACAAACTCTTGTCAAGAAGTCCGACCACCTCGTCCTGTGGCAGGATTCAGGGGAACTGTGCGTTATGCCTCAATCAATGCTCACAAGAACAAGGAAATGGGTCGGCATGATGACCTGTGGTCTCTTTTTTACATGCTTGTGGAGTTCATGGTGGGCCAACTACCCTGGAGGAAAGTCAAGGACAAAGAGCAAGTGGGGAATCTGAAGGAGACGTATGACCATCATCTTATGCTCAAGCACCTTCCCTCAgagtttattgtttttcttgaACACATCTCAAACCTTGACTACTTCACTAAACCTGACTATCAGCTCCTGATGTCTGTATTTGAGAAGAGTATGAAGAGTTACAATGTCATGGAAAATGACCCCTATGACTGGGAGAGAACTGATTCAGAGGATTCCCTCACAGTTGCTGCTCTTGCAACTACAGCGCAACAGCTGACTCGTCTCACTCCAGCTTATATGGGGATGGCCAATGCCTCTGCAATTCCGGGTGACATGCAGCGCGAAAACACAGAGGATGTCCTTCAGGGCGAGCGGCTCAGTGAAGCGGACAATTGCCCCCCCATTCCGCCCCAGCATACTCAGGGAGCTGATGTATGGGAGGAGATGGAGCGCAGTCGAGACCGCAACCGCAATCACGTTCAGCCACTGATCAGAAAGGTGGCCAGTGAAGAGGAGAGGAGTAAAGAGGGCAATCAGAGCCCCAACAGTGGCTCCATCCAAGGTTCTCCGAGACGAGTTCGCTCTGAAACGTTACTCATTGATCGCGTGGCTCCGCTGTTGAGGAGGATACGTCACAGTCAGAGTATGGGCCTGGACAAGAGACTGACCCCTGAACCCAAACCCACTATTGAACGCTTTCTGGAGGCCTACCTAGGAAAGCAGCGACCTGGACTATCCCAGGACAGGACTGGCTGTCGTATCGAGCAAGGCTCTTTGGAGGATGAGGAGGGGGCAGCCAGCAGTGGCTATGTAGCAGTTAACCTCAGCCCAGTGCCCCAAGAGGGTGACTCCCAGGAGTGGGTTCTAGTTGAACTGGAAGGAGGTAGTGGTTCAGCTGGCTCTAAGCCTGATGAGGAGGAACGCTCTGGGGTGTCCCCTCGCTCCTCTAGCCCCCTGGCTCTGCCTCGCACATGGTCTGACCCCCTGCCCCAGCGGGCCAGTAGCCTTAGTGGCTCTGGGGAGCTTCATGCTGCTCTCTGTCACACGGGCCCTCCGTTTGCCAGGCTACCTTGCCTACCGGGTCTAACTGGGTTGTCTGGGGTAACTGGGCTGAGGAGGCTGCCCACTCTTCAGCCTGCATCAGTGGTCCACCTTAGCAGAACTCAGCTAGAACAGTTATCCAGCACTTTTCCTGAGTCCATCCATCTTCAGCAAAAGTGTGAAAGTGATCCTGTTCAAGATGATCCAGTGGATGAGAAACCACATCATATGCCCGTAGGTTCACCACCGAAAATGTCTTTTCAGCTTCCTGACCCTGTGAACGACCAACTGACCTCCGTCAAAGCCACAGAGAAAGATGTGGAGAGTGACTCAGGCTGTCCGGACGGTGGTGCTTCCACAACTCCAAACCAGGGTGAGACGACTGGAGACACAGTGGATGCAGCTCTTGCCTCTCCAGTTCCAGCTTCACCACGGGAACTATCTCCAAGGGCCAGCCGCATTCCTGTTCGTGATCCAGACTCCCCTACCAGGAAGAGTTTTCCTGCCCCTCTCTCACCATCCCTCTCACTGTCCTGCGAGCACTTCCCCTCAGCACTGCTCCGGGACAAGTTCTCCTTCCCTTCTGATCGAGGATCTCGTGGCTCTGATTATCAGGGAGACGACCTCCTGTCGCTGTCCTCCTCCTCAGGCGCGCTGTCCAGCAGGAGTAAGATACCGAGGCCGATCAGCCCCACACTTGTGCCAGAGCAGTTGTCTGCTCGCTTTATGCCACGACCACCCCCAGGAAAACCACCCCTCCGCCCAGGAGGAGACAACAGGCGCAGGCGCTACCGTATCCGGGCCAGCAGTACCAGTGATGCAGATCTCCTGGATAACCTTACTCAGCTGATGCAAGAGCGAGGAGGCGTGGCTGCTTCTCGTTACCAGCGCACCACTTCCTCTATACAGCGCTCACTAAGCTCATCCCCTTCTCGCTTTGAGGGATGCCATAGCCAATCACCAGTCAGCATTTCAGGCTCTCCTCCCCCACGACTCAGTGAGATCAGAATTAATCGCGGGTTGGGATACTGTGCCAAAGGAAGATCAGGAAGCCCAGAGAACAAACCTATAACGAAGGTGAACAAATAAAACCACTAAAGAAGTTACTGTTGTGATGATGGGCCTCAGATGATTTTATCCATTTAAGACTAATCAAGTGGTTAAAAGCAGCTTTGAACTTATGGATGATTTGAGTGAGAAAACAGTAAATGTGATGGACTTTGTATGGcctattttaattaaatgacgAGGAgatgtaaaggaaaaaaatgaaaagtttggCAGAGAGACAATTATGGTTGAGATTACTTGAAAGCATTGTGTATATGCCATTTTAATCATACCTCTGGCATTCACATGCTTTTCTTCaactctcctttttttcttggcATTCCATCGTTTGCTTTTAATTTGTACTCATTTTAATCCAGCTATAAACTTGTCTTATAAATGGATTAAAATTCTTAAGTGCAGTTCATGTATTTTGTGCCAATGTATTTGCATAACTTTGCCCTCTATAGGAATTCCCATCTTTGTAAATGGTTGTTTTACATGCTCATAGGCCCAAACCAGTGCCAGAAGTGCATCTGAAGCTTAAACTGTGTGCAAGTGTGATTGTTAAAATGGATCAAATGAATAAATGCAGACTGTATTTTACTTGTGAGAATGCATGCGATCAAGTATAGGGGAGCTCCAGCTGCAGTTTTGGCATTGGTTTGTTATCATGGATTTTGCCTCAGTCATATTGCTCTTTTTCTGCAGTTATTGCtggtttttttatttatgtttaccatattttttaatgcaaccATCATTTAGCTCTCATGCCAAATGACATCCATCCATGCTGAATATACGTTGTATGTATAGACTTATATGGTCTAAGAAagcatgtgtatatatgtacttCAGGGAATGTATGTACTGTAAACAATATCATCTatagaatgtatttatttatttattagatgtGTTAATGAAACAATGACGATGTAGCTCAACGACTTGCTACTGAGTGACCTTGCAGTCACGTTATTAAGGGTCAGCAACTTTGCAATTGCCAAGTATAATCTCTTCAGCGCTTGTAATATCCTGTTACCATATGTCCTGTAAATATTGGCACCATCATTAAGAAACTTAATGAATCTCAGAGTAGCACTGTGGACCCTTCAAATGAACTGTACAAGGAACTCTTTGCTCAAACTGAGAATTGGAACACTGTAAGCACTACCAGAATATTACTTGAACAAATCAGTGTAACAGCTATTTAATAATCGCAAAAAAAGCagttccattaccatggtcatAAGATGTCttgcattattttattgagAGCTGTTTGAAAGGTAAAGGACCCCTGCAGAGACGCATGTCAAATGACTGTAATCATCAGATCACAAATAGAATATTCAGAGCGGCCACAGTGTCACATATTCATATCACCGTATCTAAAAGAACTCTGTGTGTACTGTGTAGTTAGACTAGTGCTTTAGTTCTGTTTAGTCTCTTTTGACCTCGGAAGGTACTTGGTTACTTTACATACATCAGTAGAGGACCATGGTAGTGACATGGcttaataaatgtacaaaactgtatatagatataaatacatttaagggAACAACTCCATGCTTCATGTAATGTATTTTGCTAACAGACATGGTTAAGTTATGAAGAAAGGTGTTACTCTGTTGGAATGTATATGTATTCAtaacataacaataaatactgaagtgcAAGACATTAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002648716.1 lncRNA upstream 53808 55483506 ~ 55487476 (+) True LOC111189292
TU38061 lncRNA upstream 75999 55462075 ~ 55465285 (+) True G28362
TU38058 lncRNA upstream 81984 55458993 ~ 55459300 (+) True G28361
TU38042 lncRNA upstream 151276 55380604 ~ 55390008 (+) False LOC103023616
TU37988 lncRNA upstream 376265 55163794 ~ 55165019 (+) True G28302
TU38222 lncRNA downstream 334908 55894624 ~ 55952107 (+) False G28460
TU38223 lncRNA downstream 389911 55949627 ~ 55960470 (+) True G28460
TU38383 lncRNA downstream 538947 56098663 ~ 56100801 (+) True G28588
TU38389 lncRNA downstream 562421 56122137 ~ 56122799 (+) True G28593
TU38390 lncRNA downstream 566446 56126162 ~ 56126455 (+) True G28594
XM_007243166.3 mRNA upstream 2200 55531687 ~ 55539084 (+) True slc35f6
XM_007253908.3 mRNA upstream 30799 55496106 ~ 55510485 (+) True LOC103047102
XM_022662985.1 mRNA upstream 60029 55467132 ~ 55481255 (+) False LOC103047723
XM_007253905.3 mRNA downstream 5895 55565611 ~ 55574844 (+) True LOC103046183
XM_007253903.3 mRNA downstream 40086 55599802 ~ 55615475 (+) True nrbp1
XM_022663102.1 mRNA downstream 106889 55666605 ~ 55888676 (+) False LOC103034817
XM_022663114.1 mRNA downstream 130894 55690610 ~ 55888676 (+) False LOC103034817
XM_022663117.1 mRNA downstream 130894 55690610 ~ 55886722 (+) False LOC103034817
TU37650 other upstream 1161978 54378241 ~ 54379306 (+) True G28072
trnas-aga_8 other upstream 1887554 53653649 ~ 53653730 (+) True trnas-aga_8
trnas-aga_7 other upstream 1888346 53652857 ~ 53652938 (+) True trnas-aga_7
trnas-uga_10 other upstream 1888695 53652508 ~ 53652589 (+) True trnas-uga_10
trnal-cag_6 other upstream 1889067 53652135 ~ 53652217 (+) True trnal-cag_6
TU38445 other downstream 673023 56232739 ~ 56239729 (+) True LOC103029514
TU38475 other downstream 731040 56290756 ~ 56303210 (+) False LOC103033217
TU38502 other downstream 777464 56337180 ~ 56399441 (+) False sipa1l1
TU38768 other downstream 1842209 57401925 ~ 57402392 (+) True G28865
TU38889 other downstream 2250279 57809995 ~ 57812488 (+) False LOC103042006

Expression Profile