RNA id: XM_022663460.1


Basic Information

Item Value
RNA id XM_022663460.1
length 1960
RNA type mRNA
GC content 0.49
exon number 9
gene id LOC103047227
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 57878155 ~ 57889823 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGCAgcattagagtgtgtgtgagctgctGCAGCAGGTTTAGTGCACTGACTCCTGAAGAACACGGCTACTGCTGAAGCTCTGCTCAACACAAAAGcacaCAAGGCGAGGATGAAAGCTGAATCCCTCCTAAACTGCCCCACCTCTGAAGCCACAAGGTCATACACCTATATCAGCAGTGATGGGACTCGGTGTGTGGCATGGAGGAGATATGATGGAACATTTTACACTACCAAAGAGCCTGAAGACCTTATTGACCCAGTTGTTGGAGTGATTCGAAGTGGTAGCGTGGATGTCTTGCTGGAGATGATCATGGCTGGGAGAAATGTAAGAGACAGATCTCAGCAGCAGGGCTGGAACACTCTGCATGAAGCTGCAGCTCATGGGCAGGACAAATGCCTCAGAGTGCTGCTAACAGTGCACCCTGAGCTGATTGACAGTTGTGACATGAAACGGCGTACTCCTCTTTTTGTGGCTGTGGAAAGTGATCAGGTTGCCTGTGTGGAGTGTCTTCTAAACTGGGGTGCTGATCCAAACATTTCcaataaagacagagagaccgCCTTGTGTAAAGCATGTGATGTAGAAAATGCAGAGATGGTGAAGCTCCTCCTGAATGTGGGTGCTGATGTGAATAAGAGCTGCAGCCAAGGATGGACTCCCCTCCATGAGGCTGTGTGCAGGAacaatgtggagatctgtgaGATCTTACTGAAAGCAGGAGCCAAAATATGCACACCTAACACTTATGGCCTTACACCTGTCTTTGTGGCAGCCCAAACTGGAAATGTAGAGGCATTAGGCCTCCTCCTGCAGTATGGAGCAAATATCGACAGCCAGGCTGGTGATGGTGCAACAGCCCTCTTTGAAGCCTGTAAAAACGGCCACGAGAGAGCTGTAAGACTTCTCCTGCTGAAGAATGCTGATGCCAACAAACAAACCAAGGCTGGACTCCTCCCACTTCACATTGCTGCCCAGCATGGCCATTATGAGATTGTGTCCATGCTGATTCCAGTCACTTGCAGAACCAAAATTCACTGCAGTGGCATCAGCCCCCTCCATCTGGCAGCTGAGCACGATGAGGACTATGTCCTGGAGCTCCTGATCCAGGCTGGCTTTGATGTGAATGCTCTGCTGACACCAGGACGTTCCTGCATGTATCAGGACCGTCGTACCACGGCGCTTTACTTCTCTGTCAGTAATGGAAACATTGAAGCTGCAGCTATGCTCTTGAAGGCCGGTGCAAACCCCAACCTGGACTACTTCAGACCCATTCTGGTAGCTTTGAGGCAGGGCTCAGTCCAGATGGTACAGCTGCTTCTGGATTATGGTGCTGATGTAAACACGGTGTTTCCAAACTCGCCGACCACTTTCCCCTCCACTGTCTCTATCTGCATGAACTGCCTGCCCATGCTGAAGCTCCTCATGGACAATGGATGTGACGCTCTGTCTTGCTTGCAGTGCAGGTATGGCAGCAAATCACATCCACCGCTGAAAAACTGCACCAAAGACAACTTTGATGTCAACAAAGAGGAGCCATGCATTCAGTTCTGTGAGATGATCTCCCGGCCTACAGTGTGTCACTGGGCAGGACCAATCATAGACCTGCTGCTGGATTATGTGGGAAATGTCAAACTCTGTTCCAGGCTCACTGAACAGCTGGACAGCAATAAAGAATGGCTCTGCATCAAGGAGAGAACAAGGGCTCCACACTCAATGAAGCAGCTCTGCAGACTGAGTATCCACCACTCTGTTGGAGCACAGAGAACGAGCAGAATCAGCAAACTCCCTCTCCCTAAACGACTAATCCAGTATCTACACCACCAGGAGTGACAAgacatattattaaaatgttataatgattgatggatacatacatttacagatGCTGTTGCAGTtatgtttagtgtgtttttgaTTCTGTGAagctctatataaataaatttgagttGATTAATCAC

Function

GO:

id name namespace
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0043169 cation binding molecular_function

KEGG:

id description
ko04371 Apelin signaling pathway
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38881 lncRNA upstream 87204 57790251 ~ 57790951 (+) True G28955
TU38783 lncRNA upstream 361850 57450210 ~ 57516305 (+) True G28872
TU38767 lncRNA upstream 479934 57397948 ~ 57398221 (+) True G28864
TU38728 lncRNA upstream 759432 57118496 ~ 57118723 (+) True G28833
TU38711 lncRNA upstream 867436 57010477 ~ 57010719 (+) True G28822
TU38941 lncRNA downstream 21503 57911326 ~ 57911593 (+) True G29003
TU38971 lncRNA downstream 171102 58060925 ~ 58076530 (+) True G29029
TU38980 lncRNA downstream 226162 58115985 ~ 58119141 (+) True G29036
TU38984 lncRNA downstream 238039 58127862 ~ 58128360 (+) True G29040
TU38977 lncRNA downstream 253050 58142873 ~ 58144817 (+) True G29033
XM_022663451.1 mRNA upstream 2763 57859082 ~ 57875392 (+) True LOC103041704
XM_007258204.3 mRNA upstream 2763 57859082 ~ 57875392 (+) False LOC103041704
XM_007258209.3 mRNA upstream 23032 57848467 ~ 57855123 (+) True LOC103042834
XM_007258205.3 mRNA upstream 65968 57802891 ~ 57812187 (+) True LOC103042006
XM_022663418.1 mRNA upstream 77284 57795392 ~ 57800871 (+) False LOC103043365
XM_007258203.3 mRNA downstream 30912 57920735 ~ 57968882 (+) True LOC103041400
XM_007258200.3 mRNA downstream 113424 58003247 ~ 58051793 (+) True LOC103040480
XM_007258194.3 mRNA downstream 188665 58078488 ~ 58080709 (+) True LOC103038833
XM_007258196.3 mRNA downstream 196686 58086509 ~ 58135453 (+) True LOC103039449
XM_015608112.2 mRNA downstream 196692 58086515 ~ 58135453 (+) False LOC103039449
TU38889 other upstream 65667 57809995 ~ 57812488 (+) False LOC103042006
TU38768 other upstream 475763 57401925 ~ 57402392 (+) True G28865
TU38502 other upstream 1478714 56337180 ~ 56399441 (+) False sipa1l1
TU38475 other upstream 1574945 56290756 ~ 56303210 (+) False LOC103033217
TU38445 other upstream 1638426 56232739 ~ 56239729 (+) True LOC103029514
TU39139 other downstream 527571 58417394 ~ 58418817 (+) True G29155
trnal-cag_8 other downstream 1308379 59198202 ~ 59198284 (+) True trnal-cag_8
TU39407 other downstream 1330709 59220532 ~ 59221036 (+) True G29382
TU39412 other downstream 1338245 59228068 ~ 59228699 (+) False LOC111194375
TU39414 other downstream 1338488 59228311 ~ 59228562 (+) False LOC111194375

Expression Profile