RNA id: XM_022663546.1


Basic Information

Item Value
RNA id XM_022663546.1
length 1814
RNA type mRNA
GC content 0.39
exon number 1
gene id tmem251
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 58081670 ~ 58083483 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGGAGCATGGAGAATGATGAATTTCCGCCAGCGGATGGGATGGATTGGAGTGGGACTGTACTTGCTGGCTAGCATTGCTGCAGTCTACTATATGTTTGAGATTAACCAGACATACAACCGACTCACTCTGGCACATGTAGAGAAGGTGActggaacacacacaccctgGACCGGAGACTCTGCATCTCCCTCTTCTTCTGCAACCTCTTGGACACAGAGTGTGAAGACCAGACTGTTGCTGCTGCCCTTCTGGGTTTGGGCCACCATCTTCCTTATTCCttatctccaagtgttcctttttCTCTACTCATGCACCAGAGCAGACCCCAAGACTGTGGGTTATTGCATCCTGCCCATCTGCCTGGCTGTTCTCTGTAACCGACACCAGACATTTGCCAAGGCCTCCAATCAGATCAGCAGGCTTCAGCTAATTGACACCTAGTGGAGCCGGTTGCTGGTCAGGATGAGGGGCAGGTCCTCGATCACCATGCCCTTATGGGTCCCAGATGGCTAGAGGAGCCAGATGTGTATACATGTGTATACGACTTTTGTGCACTTGATAAATATCAGTCTTGATTAATTTTGCAGGAAAGTGATCATAAGACCAATTACAGAGGGAATCTGCTGATTTTTCCTAAATTTGTGCATAGCTCTAGCTATAAGATGTAAGCAAGGTGATTCTGAGTGGTTTGTTGTGAAATAACCAGTTCTAGAGAAACGTACCCGAAGTCAGAATGATTCACAGCGGTGGCGATGGGAGTAAGAAATTCAGAATGTTTAGATAGAGTTGGAAATGAGGGTGGAGAGGTACATTTAGtgcaaaattattccaaaagagAATATATTTGAATATCATAAACATCACATATAAAACTCTCACAAGTGCAGGTTCACtaattgttttggtttttggataatttatattttatactttgacCTTTGACTCAGTATGTTTCCTTACAATAAACCACTTCACAACAAAACACTCAAAATGACTTTGTTTACAACTCAGTGACTGAATTATATAGACATTGAAAAGACCATGGAATTCCAGTTTAATATCAAGtttgtacttattatttttaataagatgTTAGCCTAATGTTGTGAAGGCATTCTTTTAATcaccttaaatgtaaaatttattaCGAAAACAGATTtgtagctttttaaaaaaatgatcagacCTGGCAGGGTGGTACTTTTGAAATCCTGCTTCAGAAACAATGGCGTTACAATGACAAATGTGACTCGGTGACTCACTTAAGCAGCTGATTTGATCTTATTTTAGCCCTGGTACCTTCAGTGTTTCCCCCCCATTAAAAACATCACTGTAGTTCCACACCAGTGGCTGGCTGCTTCTTGctaaaagacttaaattaagttAGGATGTGTGTTCTGGTGTTGAGCCTGTTGTAAGAAGACAAGCAAAAGTATTACAAAGTTTCAcaacatttaagtttgttttaaatCTTCATTGTTTTTGAAAAACGTACCACCAAACCACATGCTGCTGTTATACAGTTTCAagttttggtgtgtttgggtAGGTTTTGAATGTTCATTCTGCAGAATTTAGCAGTAGcaacacttttaaaatacattttttaagtaaaccaGAAATAAAACCTTAGTCTAGTGTCCTAAACAAGTGTTTCCATGATGCAAATCAGTTATGCTACTTGCCagctaatatgttttttttttttatatgactcCAGACACAATTTGACTACAAGATGCATATAATAAAAAGTTGTTGGTATAAGGCCacctttcataaaaaaaatgcttttgtaaCAATCAGTTTAAGA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39044 lncRNA downstream 24210 58002119 ~ 58057460 (-) True G29085
TU39042 lncRNA downstream 86194 57991641 ~ 57995476 (-) True LOC103041090
XR_002648892.1 lncRNA downstream 87557 57992403 ~ 57994113 (-) True LOC111189816
TU38935 lncRNA downstream 204925 57876271 ~ 57876745 (-) True G28997
XR_002648883.1 lncRNA downstream 228169 57849734 ~ 57853501 (-) True LOC111189782
TU39078 lncRNA upstream 38981 58122464 ~ 58124565 (-) True G29108
XR_002649731.1 lncRNA upstream 179761 58263244 ~ 58264118 (-) True LOC103035795
TU39109 lncRNA upstream 229331 58312814 ~ 58385453 (-) False G29131
TU39108 lncRNA upstream 237555 58321038 ~ 58385453 (-) True G29131
TU39111 lncRNA upstream 237555 58321038 ~ 58330972 (-) False G29131
XM_022663501.1 mRNA downstream 5105 58060823 ~ 58076565 (-) True LOC103040793
XM_007258202.3 mRNA downstream 86198 57991641 ~ 57995472 (-) False LOC103041090
XM_022678386.1 mRNA downstream 240352 57812262 ~ 57841318 (-) True ppp4r4
XM_022678382.1 mRNA downstream 328527 57685492 ~ 57753143 (-) True LOC111194372
XM_007258212.3 mRNA downstream 426590 57607770 ~ 57655080 (-) False LOC103043676
XM_007258199.3 mRNA upstream 53126 58136609 ~ 58149747 (-) False chga
XM_007258198.3 mRNA upstream 53126 58136609 ~ 58149747 (-) False chga
XM_007258197.3 mRNA upstream 53126 58136609 ~ 58149747 (-) True chga
XM_022663555.1 mRNA upstream 75724 58159207 ~ 58169875 (-) True LOC111189852
XM_022663552.1 mRNA upstream 75724 58159207 ~ 58165281 (-) False LOC111189852
XR_452898.2 other downstream 1387545 56646027 ~ 56694125 (-) False LOC103031416
TU38322 other downstream 2265072 55815872 ~ 55816598 (-) True G28536
TU38270 other downstream 2474784 55602870 ~ 55606886 (-) True G28501
TU38271 other downstream 2475388 55602870 ~ 55606282 (-) False G28501
TU38134 other downstream 2579910 55499900 ~ 55501760 (-) False LOC111189318
TU39086 other upstream 85838 58169321 ~ 58174704 (-) False LOC111189852
TU39330 other upstream 849480 58932963 ~ 58934789 (-) True G29317
TU39539 other upstream 1354117 59437600 ~ 59438298 (-) True G29478
TU39714 other upstream 2074055 60157538 ~ 60162024 (-) False LOC103034188
XR_002649735.1 other upstream 2285563 60369046 ~ 60369614 (-) True LOC111191938

Expression Profile