RNA id: XM_022663662.1


Basic Information

Item Value
RNA id XM_022663662.1
length 1838
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC103021664
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 58804247 ~ 58819777 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCGCCGCCACACGCTCTTAAACGCCTGGCGGCGCCTCGCGTTTGTTCCAAGGCGTAAAAGTAAGCCCTGCACGGCGTTTTGGACGGCGTTTTTTAAGTATTACGCACGCTTTAAGCGCCGTCAGACCCAGGCGAATTCTGACCCATTTGGCTTGCCATATTGGCCGAGCCCTGGCGTCGCTCGCACGCGCTCACTTCTCTTGTGCCGCGGCGGCTGCGCGTGAAATTTCACTCGTTAACAAGTTTGCTGCGCGCGCGGATCTACCGGGgagcacacacacttacacacacacacacacacacacacacactaaccactGAACACTCGGCTCACACactgctccagcagcagcagctcagcggacgcacacacacacggcgGCTCGGATCACGCGGGGACACAGCGCACTACTGTAGAGACAGgttGTTTAGGTGCAGGACATTATGACAGAGGTGATGAACACCTGTGAGTCGGCAGTGGGGGACTACGGAGCATCTGGAGACCAAAACATCACTTTTCAGATTTTTCCAGAATCACACGAGCGCTACCCTAAGCTGTCCAAGCGCTTGCCGTCCATCGTGGTGGAGCCCACTGAAAGCGGAGAGGTGGAGAGTGGGGAGTTGCGGTGGCCTCCAGATGACCTGAGCCCTACAGAAGAAAGCAGAGAAGCTCAGGGCCAGAAGACAGGTGAAGAGACGACGGCGGAGGTTGAGGAGGCTGGCGGAGTGACAGCGAACTGATGGGCAGTAGCTGGCACCAACCCAACCTAATACTGTGAACGTCTTCATGATGGACAAGAGCATGAGCAAGAGGCTCCAACAGTTAGGTCTGACTACAGTATCACCCGCACTAGAGCCACCCACCTGTCGACAGACCTCCAATCCAGTAGGGGGAAGCAGAGGCCTGGGAGATCGTCTTCGCTGAAATAACTCACGTGCCAAACTCTAGTGGTAGCCAGCTACTGTGATTGAGTTGTACATTCTTTTCCTTCCTGTAACCATTCATCTGCAATATTTTCACTAGACTTCATTTGTGCCtggtttttaaataatgtatccACTTTGAGGTAgcgtatgtatttatttgcttttgaCCAAAGTCTTAAACATTTGACCCTTTTGACCTTTTAACCTACCACCCCCATTAGTCCACAGCTTATGATTTGATGTGTAATGCAGAAATTCAGTATATCTCATAAGATAAATTTCAAGCAATGTAGACATGTAGTTCATCTACAATAGTGCTTTGTTCACAAATgtagaatataatattaatatgtacagtagatTATATTTTATGATGTGTTTTCAGAACCTTCTTATATTAAGTTCAGTGTAAAGCAGCTGTAACATAATATCTCAATATTCTTTAACCatgtttttcatttgttctttAGATCTCGGGACACATTTGTACAGTTGATTGGCCATCtacattgttatatttttttctctcgatataacacaatatttcttctgcttctgttgtgtttttaggtCATCGTTAAAGAAACTGTCTGCAGTCACagagattgtttttttttttcagttttgcaaatatatataaaaaagtaattataattTATCGTATTAGTCTGTGGTCACATTAGTCAaccattaaaaatacaagaaaaaaataacaatctcTGGATTGTACCAGTTTAATAACTTTAACCTATCCTCTTAAAATGCCACGAATGTACTTTTCATGGTAAATCTGTTACAATAACAAAGCACCTTGCTTAGATGTATGGAATCTATAATAGCACTGTTGATCACTTTCTACTGAGGTGCTGACTACCTTGGTTTGACCACTTATTAAAGGCACATATGCTGCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39244 lncRNA upstream 24295 58779114 ~ 58779952 (+) True G29251
TU39234 lncRNA upstream 79322 58724628 ~ 58724925 (+) True G29241
XR_002649732.1 lncRNA upstream 81317 58721572 ~ 58722930 (+) True LOC111191935
TU39181 lncRNA upstream 283752 58520164 ~ 58520495 (+) True G29193
TU39180 lncRNA upstream 284167 58519879 ~ 58520080 (+) True G29192
TU39256 lncRNA downstream 4472 58824249 ~ 58825736 (+) True G29263
TU39260 lncRNA downstream 30200 58849977 ~ 58850430 (+) True G29267
TU39275 lncRNA downstream 40723 58860500 ~ 58860827 (+) True G29276
TU39289 lncRNA downstream 68341 58888118 ~ 58888349 (+) True G29290
XR_002649734.1 lncRNA downstream 68946 58888723 ~ 58895340 (+) True LOC111191936
XM_007258170.3 mRNA upstream 295772 58504802 ~ 58508475 (+) True LOC103031977
XM_022663632.1 mRNA upstream 323460 58457954 ~ 58480787 (+) True exoc2
XM_007258179.3 mRNA upstream 418727 58321035 ~ 58385520 (+) False gmds
XM_007258178.3 mRNA upstream 418727 58321036 ~ 58385520 (+) True gmds
XM_007258180.3 mRNA upstream 486768 58282590 ~ 58317479 (+) True LOC103034955
XM_007256622.3 mRNA downstream 45823 58865600 ~ 58882191 (+) True LOC103021996
XM_022678389.1 mRNA downstream 77560 58897337 ~ 58908006 (+) True LOC103037011
XM_015607694.2 mRNA downstream 105599 58925376 ~ 58934791 (+) True LOC103022293
XM_022663695.1 mRNA downstream 107223 58927000 ~ 58934791 (+) False LOC103022293
XM_022663697.1 mRNA downstream 107263 58927040 ~ 58934791 (+) False LOC103022293
TU39139 other upstream 385430 58417394 ~ 58418817 (+) True G29155
TU38889 other upstream 991759 57809995 ~ 57812488 (+) False LOC103042006
TU38768 other upstream 1401855 57401925 ~ 57402392 (+) True G28865
TU38502 other upstream 2404806 56337180 ~ 56399441 (+) False sipa1l1
TU38475 other upstream 2501037 56290756 ~ 56303210 (+) False LOC103033217
trnal-cag_8 other downstream 378425 59198202 ~ 59198284 (+) True trnal-cag_8
TU39407 other downstream 400755 59220532 ~ 59221036 (+) True G29382
TU39412 other downstream 408291 59228068 ~ 59228699 (+) False LOC111194375
TU39414 other downstream 408534 59228311 ~ 59228562 (+) False LOC111194375
TU39514 other downstream 734549 59554326 ~ 59559752 (+) False atraid

Expression Profile