RNA id: XM_022663890.1


Basic Information

Item Value
RNA id XM_022663890.1
length 3877
RNA type mRNA
GC content 0.47
exon number 31
gene id LOC103031863
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 59792576 ~ 59830891 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTGGCTTAAAGCAGCACCTCCATCTAcctggagctgcaggagctgcaggGTGTGGATCAGCTCTACGGATATGAGCCCGTCTGGAGCGGAGAGCCTACTTTGCAAGGCCTAAGGAGGGTGTGATGGTGTGCTTTTTACTGTAAGAGGTTTTCAAGATGTCAGGTGATACCACCACACTGTCCTGGAAGGTGCCTACTCCAGGCTCCGAAGGACCAAAGAGCCCTGTGTTTGGCTTAGCTGGTGAGGGGGGACCTGTGAAGATCCTCAAAGTGTGTTTCTGCAGCACCAACAACCTGAAGAACTTCAAACTGGTCAAGTGTGACAGTTCCTGGCAGATAAGGGCCATTATCCAGTCTATTCTGATTAGTGGTCGTTTGGGTCCTAATGTGCAGAATGGGCCGTGCTTTGGGTTAAGGCTCAAACATCTGAAGTCTGAGGAGCACTACTGGCTGCACCCAGACCTGACTATAGGAGACGTGGAGCAGCGCTACGAGAGACTTCATGTGGAGGCAGAGTGGAGATATGACTTGAGAATTCGCTACATACCAGCTAATTACCTGGAGACGTTTAAAGAAGACAGAACTTCACTGTTATATCTGTACCATCAGGTTCGCAATGACTACATGCAACATTATGCCAGTAAGGTCAGTGAAGGCATGGCACTGCAGCTGGGCTGTTTGGAGATCAGGAGATTTTACAAAGACATGAACGCCAAAGGCCTTGAGAAGAAGTCTAATTTTGAGCTGCTAGAGAAAGACGTTGGTCTGAACCTTTTCTTTCCACAGAAACTGATAGACAGTAACAAGCCCAAACAGCTGAGAAAGATGATCCAGCAGACCTTCCTGCAGTACGGCACACTCAAAGAGGAAGAGTGCATTCTCAAGTTCTTTAAGACCTTTGGTGAATTCATTAACTTTAATGAAGAGGTTTTCCCCTGTGAACTAGTGCAAAGTTGGAGTCTATCAGTGGATTTAGTTATTGGAGCAAGAGGGATTCGGCAGCGTGCACACTCCGATTCATCGaTGCTCTGTCTGGCAGAATTTAAACAGATCCGAAGTATCAAGAGCTCTGCGCAAGGTGATGGCAAAGCCCTGTTACAGGTCGACATCAAAGGAGCCAAACAGCCTCTCTCCGTCAATGTGCCGACTCTGGCAATGGCGGAAAACATGGCGGATTTGATTGATGGATACTGCCGGCTAGAGAGCAACACAGATTCATCACTCATATCTCGGCCAAATAATAAAGGTCCTGAGATTCGGAGTGCTCTTCCTGCAATCCCTTCAGGacagcTGCCTGAACCCTTTAAAGACACTGAAAGACTCAGCAGGAACTCTGATATATACTGTGAAATCATGGATGAAAAACCGCCCCCTCCTGTACAGAAATTTGGAATCCCTAGGAAGGCCATTGTCTTGGGCCGGATCTTGGGTGCAGGTTTTTTTGGGGAAGTCTATGAAGGAGTTTATAAAAAAGGGAATGGTGAGAAGATCAATGTGGCTGTGAAAACCTGTAAAGACTGCTCACCCGACGTCATGGAGAAGTTTATGAGTGAAGCAGtgatcatgaaaaacctggaccACCCTCATATAGTGAGTTTGATAGGAATAATTGAGGAAAGCCCAGTATGGATCATCATGGAGCTCTACCAGCATGGCGAGCTCGGGAACTACTTGACCCAAAACAAGAACACTTTAACCAATGTCACATTAGTGCTGTTCAGCTTGCAGATTTGCAAAGCTTTGGTCTATTTACAAGGGAAGAACATGGTACACAGggaCATTGCTGTGAGAAACGTGCTTGTTGCTACACCAGAGTGTGTGAAGCTGGGTGACTTTGGCCTGTCCAGATACATAGAGAATGAGGAGTATTATAAAGCCTCTATTACTCGATTACCCATCAAATGGATGGCCCCTGAATCCATCAACTTCCGCCGCTTTACCACAGCCAGCGATGTGTGGATGTTTGCGGTGTGCATGTGGGAGATGATGAGTTGTGGTCAGCAACCCTTCTTCTGGCTGGAGAATCGTGATGTGATTAACCAGCTGGAGCAGGGCATCAGACTGCCCAAGCCAGAGCTGTGCCCTCCTGCCCTCTATTCCCTCATGACCTGCTGCTGGAGCTACGACCCCGGCGAGAGACCCAGCTTCACCGAGCTCGTCTGCAGAATCAGTGATGTTCACACAATGGAGAAGGAGCTGGAggtggagaaggagagagacagagctcgCTCCAACAAGTTCCTGGAGCCCAAGTTCACCGAGCCTCCTCCAAAGCCTTCAAGACTAAACCCTGGGCGCTTTGGGAACACCCTCAGCATTGGTCTTCATATTCAGCTGAATGAAGCATTATGTGCCAGTTCTCCAGATCTGGCCAGTCCTTGTGATTATCAGTCTCCCATAGACTCCACCAACGCCCTGACTGTTCCTACCGTGGCCGCTCGTCGCCTCAGTCTGGGAgAGGAGTTCAGCGTGGGGCCGTCCAGCATGGAGGACGCACAGCGCCTGTGGCAGGCAGAGAAGCAGCGGATGCAGGACACcataaagaaacagaaagaggacATGGTGGATGATAAACATTGGCTGGACAAAGAGGAGAAACTTTTGGACCCCAAGATTAAAGAGAAGACAGTTGTAGAGCTGCCGCCAGAGCCTGCTCAGGCTGACCCTCAGATGGCTCCTGCAAAGCCCCCGAGAATTTCAGTGCAGcccGCCCCCACAGCTGAGCTGGACCGCTCTGAGGACAAGGTGTACCAGTGTGTCATGGACTTGGTTAAAGTGGTGGTGCAGCTGAAAAACGATGTGAACACACTGCCATCTTCTGAGTATATAAGCATAGTCAAGTCAGTTGGGATGTCATTGAGGGATTTGATTCACAGTGTAGATGATATCCTTCCAACTCTCCATGGGTCTGTAAGAACAGAGaTCGAGGGCACGCAGAAGCTGCTGAATAAAGACATGGCCGAGCTGATCAGTAAGATGCGTCTGGCTCAGCAGAACTCCATCACCTCTCTAAAGGAGGAGTGCAAGAAGCAGATGCTGGCGGCGGCTCACACGCTGGCCATGGACGCCAAGAACCTGCTGGATGCTGTGGACCAGGCACGGGTACGCGCCAACCTGGCCAAGCCCAAACCTGAGGATGCAGACACTGCAGACACTGACTAGAGAATACAGAGCCTGCCACATTTTAAACCAAGGACCTTGCTGACTCATAAAGTTACTATTCTATATCTGGATAACTTGGAGGGCCAGTTTCCTGGATACTGATTATGCCTGAAATACATTCCAGCCTGTGGAGCTCTTTCATTTAGTATCCATTTTATTCTTGGACAGAGATGCTCAGCCTTGTCCCTGGAGACACACTCTCCCACTGAGTTTAGCTCTAATGAACTCAAAGGACTCAAggaatatattaaagttaaagttggatgtgatattttatattagGAAATAAAATTTGCATTTGGACAGATTTTTTTGGTGCAGTGCTGATTTAGACTGAATCTACAATGCAGTCTCTGGACAAAGCAGTTTTGTAAGATCTAACATGACCTTGAtaattttatgtaattgttcaggACAGGACTGTTCAGTGGTCACCCTATTTCAATACTCAATAttggtctatatatatattgtctaaGGGCAGCAGATGTGTGTCAGATAAATGTATAAacctttttgtgttttgtatacAGATGCATGAAATGACATGCTTATTTTTGGAGCTACGATTTTAGCATAAAAATGAGGACATCCTTACAGATCACACTGTTGCGTTCCTCAGCTGTGCTCATGTCCTCATGTTGTCTGACAGTGAACTCTAAAGCAGTgtcaataaaaaatgtattaaataaaaaaaaaaaaatctgtctgagaCT

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0007172 signal complex assembly biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005925 focal adhesion cellular_component
GO:0005524 ATP binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function

KEGG:

id description
K05871 PTK2B, FAK2; focal adhesion kinase 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39584 lncRNA downstream 184730 59607175 ~ 59607846 (-) True G29509
TU39571 lncRNA downstream 214181 59576259 ~ 59578395 (-) False LOC111190079
XR_002649010.1 lncRNA downstream 214184 59576238 ~ 59578392 (-) True LOC111190079
TU39568 lncRNA downstream 218040 59574328 ~ 59574536 (-) True G29494
TU39564 lncRNA downstream 232912 59554504 ~ 59559664 (-) True G29492
TU39642 lncRNA upstream 21164 59852055 ~ 59852468 (-) True G29559
TU39646 lncRNA upstream 27175 59858066 ~ 59858339 (-) True G29563
TU39706 lncRNA upstream 243181 60074072 ~ 60091759 (-) True G29608
TU39772 lncRNA upstream 520382 60351273 ~ 60352884 (-) False LOC103035785
TU39775 lncRNA upstream 524578 60355469 ~ 60355877 (-) False LOC103035785
XM_015607686.2 mRNA downstream 88493 59700034 ~ 59704083 (-) True LOC107197813
XM_007256653.3 mRNA downstream 183585 59599420 ~ 59608991 (-) True LOC103030505
XM_022663830.1 mRNA downstream 218965 59562829 ~ 59573611 (-) True eif2b4
XM_022663821.1 mRNA downstream 218967 59562829 ~ 59573609 (-) False eif2b4
XM_022663798.1 mRNA downstream 239667 59507241 ~ 59552909 (-) False snx17
XM_007256657.2 mRNA upstream 51249 59882140 ~ 60059600 (-) True LOC103032183
XM_007256660.3 mRNA upstream 266597 60097488 ~ 60123478 (-) False LOC103032801
XM_007256659.3 mRNA upstream 266597 60097488 ~ 60117562 (-) True LOC103032801
XM_007256661.3 mRNA upstream 297156 60128047 ~ 60145920 (-) True LOC103033561
XM_022663912.1 mRNA upstream 318506 60149397 ~ 60162066 (-) True LOC103034188
TU39539 other downstream 354278 59437600 ~ 59438298 (-) True G29478
TU39330 other downstream 857787 58932963 ~ 58934789 (-) True G29317
TU39086 other downstream 1617872 58169321 ~ 58174704 (-) False LOC111189852
XR_452898.2 other downstream 3098451 56646027 ~ 56694125 (-) False LOC103031416
TU38322 other downstream 3975978 55815872 ~ 55816598 (-) True G28536
TU39714 other upstream 326647 60157538 ~ 60162024 (-) False LOC103034188
XR_002649735.1 other upstream 538155 60369046 ~ 60369614 (-) True LOC111191938
XR_002649101.1 other upstream 2002557 61833448 ~ 61887888 (-) False LOC103043586
TU40670 other upstream 3379390 63210281 ~ 63288108 (-) False fryl
TU40671 other upstream 3379390 63210281 ~ 63256634 (-) False fryl

Expression Profile