RNA id: XM_022664364.1


Basic Information

Item Value
RNA id XM_022664364.1
length 3863
RNA type mRNA
GC content 0.44
exon number 12
gene id spata18
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 63365674 ~ 63379522 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGGGTATCTCATTAattttaattgataagaaattgTGGTGTGGCAAGCACTGGTCCATCACCCACAAGGTTGTGGGATTGGTTTGGCAAGCTGCCACTGTTTGGCCCTTGAGCAAGGCTAGGACCCTAATTGTCCACTGGGCTCTTCTGCCCACTGTTCAGGGCATgagtatttgtgtttgtgtgtttactgcagGAATTGGTTAAAGGTGGAGGTCAAATTCCATCTGTGCAAGTACCACAAGTTTGTTTTATGGTTGCATTGTACTGTTGTAAGGAACCAGAAAGATTTGTCAATTTATCCAGAGCAGGAGAGGTTTAACATGGGACTCATTTGGGTTGTGTACTGAACATGAGGCCTGGAACCCATTCTAGATAAAGGTGGGTTGTAGTGATGGGTCTGGGCCCATTTATGAAATCCAACTGGGTCCCAGTAAAACACATGTAAAAACAATGGCAATGTAAGCCCCACATAAGAATGTTGGctcttttatattaaaatgtattggtGTTATTGGTGGTATTGGTGCTTTACTTCTCTGCAGTGAATGAGTAGTCTATACTGTGTTATACTGTATTAGAAATTAGGGTAATTAACCTTCACTAAATTTGTGTAAATAATCTCCGTCCTCCACTTGACATCTAACACCcggcgtttgtgtgtgtgtgtgagaaagagagagtgtgtgtgtgatgacagTGTGCCATTTCAGCATCTCATTACATCACCAACACCAGAGCAGTTCACGCGCTTCGGGCACAGAGCTAGCGCTCACGGGCACGCGCACGCGCCCTGCTTTATGTGTTCAATGGATAGTAAAACTCTGAGAGGAGGAGAACAGGTTTACTCAGGAGcgttttttactcacagaccgGAGGCACAAACTCAGCAGCTCCGTTGCTACAACTAAAGAGCGTCCGTAGTATCCAGCGTCACGagctgcaggaactgtgtgtgtgtgtatcacacATACAGGGGGTATAAATAGGGAGCGCTCCGGCTCCAGATTAAGTCCCGCGGTTTCTCTGGGACGTCCTAGCAGGATTAAGGGTGCTGCTGAACTGCAGACATGGCAGACACGCTGCGGAGGCTGGTCAACACATCATCATACAGCGTCCTGCAGCAGAAACTGGAGGCCTGGTACAAAGACTACCATGTCATCTCATGTGACCAGAACCTGAACCGCTGCTGTGAGTTGGTGGAGCTCACCTCTAAGATTCAAGGGCAGCTGTTCACTATCCTAAACCTCACAGCTCAAGAAGGTGGTCACTATGCAGGAGCGGACACCCTTAAATCCCGTCTGTTGCCATGGCTCAGTACTTGCTTCACAATGGCATCCTCCTCCGTCTCTCCAGACACCAGCCTCAACCTCATTCAGGACAATgtggagaaggagaggaagatcCGAGAGCTGTCGCTGTCTCACGAGAGTGACATGCAGAAGATTGAGGATCAGCTGTGCTCCACACGCATAGAGCTGAGCTCTGTCAAACAGGAGCTCACTGAAGCTAAGGTTCAACTGGACTCCACTAAAAACAAATCAGTCACTACCCTTCTTGCCACAGAGGATGAAATACTGCACCTTAAAGCAGAGTTGCGGGCAGCCTATGAACAGGTGGATGTGTATAAGAGGAAGCTGGACGTGCTGGAGGACTACGAGAGGCAGGTCAGGTTACTGAGAGATGAGGTCACCTTTCTCACTGCGGAGAAAACCATGTTACAGGAAAGgCTAGTGAGGAGTCGTTCACCCAGTCCAATTCTACCTCGAAGGAGTCGTACCAGCAGTCCTGTCAGAAGTGAGTCTCCCACTCGCGCTCAACTGACCAACTCATCCCGCCACGCACGGCTTGTGTCCCGCTTCTCTGACCTGTACGCCACTGAGAGGCTAGAGGCCCAGAGCTTCCTCCGCCGCTACATCGATGACTTGGAGACAGTGCAGAGGATCATTTTCATCGCTGCTGTGGAGTCATTCCAGGCAGCTAAACTGGCCTATCGGCAGTTTAAACTACGTGTGAGGAAGACCCTGTCCCCTACACATGTTGGTCCTGAGACTCTGGAGGATGCAGTAGTGGATTACATTGTTCGAAACCTTGACCTCTACGATGTCCAAACAAGTGTTAATGATGTGATCAACTCAATGAACGTGAACCCACGTATCTCCTTCCCTCCGGAAGTGGACTTTGTGCTTATCAGTAGCTTCATCAGAGAGATGTGTAGAATCGCCTTCGCCATGCAGACGCTTGATCCTACTCTAGACCTGGCCTTCAGCTCAGATGGAGAACTCTACAGTGACATGAAGTACAGGCGGAGCTATGACTCTGAGTTTACTGCTCCACTGGTAGCGTACCATGTGTGGCCTGCGCTGATGGAAGGTGATGCTGTCATAGTAAAAGGAGAGGCTGTGACCAGGAGAGGGGCACTgTGGAGAAGCAGAAGCCGCAGCTCCAGTCCTGTCCGCTCTCGCCCAGGAAGCCCCACCCGCACCCTTcagATGTCCAGTCGTAGTAGGAGTCCTTCCCCTGGACGTCTCTCAGCGAGCCGGCTGTAAAATTAGCTTGTGAAATCCATCTTTTCAGCTTTGGCTGAAATTTTAGTAGACTCATTACCACTAATATTCATCTCCTTTTATCTTTTACATTTGTATTAGAGAGTCTTTCCAGATTGTATTTGTATAAATTTGacattttgtttctttaaagaTGGGCACAAGTTTACTAACCCTTAGTATATGGACTGAAGCTTGTTTTATACTCAGAAAACCTCTCGATACAAAGCCAAAGGCCAGGGCATTCAAAGAATACCAGGAACATGCATTAAATAAATCAGGAGCATTTGGAGAGCCTGGGTGCTAATACATTACACTCTTTATGAGTAAAAGCTCCCCAATCTGTGGCCTGCCACTAAGGTAGGTGCTTTTATTGTCTAGTAAAATAGCTGGACAAACCTTCAAAGGAGCTACAGTTTCAGCCTtttctaaatgtgtgtgtgctgtgtttttaaaattctCAGTGTTCAAATCAGTAGGACTAGTCATAGAGTTTTACAGTAGGATAGTTACTCTGTAGTCTATCAGTCTTAAAGCCTGCACAGTAGCACTTTTCTGACTTTTCAGGTATAAGACCTATTTCTGATTTTAACGCAAATGAGTGTGTACTGTAGGGCTCTATTTCCCAGTTACAGTGTCTTTCtatgtatttttaaactttagtGCCCGtacaatttatatttttcttccaATTAAAAAGTATAAATTTCTAGATTCTAAATTATAAGAAAAACATTCCTTACATTGTTTTAGTAATAACAATGCAGTCAACATTTTGACAGCACAAGCTTGGCAGATATTAAGTCTCATAAGGTTTGATGATTCTTAAGTGTCAACATGACTGTTTATATCCTCATATGAATATAATGAGTCTGGAGTTTCCCCCTGATGTTTGCATGAGTAGAGTGGAATGTGTATGGTTAAtactttattgtattttctgtGTGCTTTGCCACTTTATACTTTTGCCAGACCATTATGCAGACAATGTGAAGGTCACTCTTTTCACTGGTGCTAAAATATTGAGTTTACTACCTCTCAGAGGCATCTGTGTTTCATCATTGTGGACAAATCAGACATTCCAGTTTTTAACttctttaattctatttttttgtattagtaGTTACTCTGTAAACTCTGTATTTCTGTTTGATTACTCTGTAAAAAGGTTGATGATTTTGTAAGATGATACTGCAGTGTTTGTAAGGGTTTattaacatacaaaaaaaagaactgcaATGAGGACaagtaaatatattgtatttctttaaaaacaatggaaaataACAAATGACTAATAAATTAAACCTGAATGCaa

Function

GO:

id name namespace
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0035694 mitochondrial protein catabolic process biological_process
GO:0035695 mitophagy by induced vacuole formation biological_process
GO:0005741 mitochondrial outer membrane cellular_component

KEGG:

id description
K22257 SPATA18; mitochondria-eating protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002649739.1 lncRNA upstream 66944 63297863 ~ 63298732 (+) True LOC111191941
TU40658 lncRNA upstream 77542 63263950 ~ 63288134 (+) True G30335
TU40634 lncRNA upstream 215461 63149666 ~ 63150215 (+) True G30314
TU40631 lncRNA upstream 223008 63139298 ~ 63142668 (+) True G30311
TU40572 lncRNA upstream 248261 63116862 ~ 63117415 (+) True G30280
TU40763 lncRNA downstream 54309 63433831 ~ 63435982 (+) True G30383
XR_002649180.1 lncRNA downstream 86721 63466243 ~ 63468751 (+) True LOC103041812
TU40768 lncRNA downstream 86753 63466275 ~ 63468617 (+) False LOC103041812
TU40773 lncRNA downstream 147999 63527521 ~ 63550200 (+) True G30393
TU40942 lncRNA downstream 877592 64257114 ~ 64269674 (+) False kit
XM_022664352.1 mRNA upstream 30808 63318652 ~ 63334868 (+) False dcun1d4
XM_007257029.2 mRNA upstream 30808 63319256 ~ 63334868 (+) False dcun1d4
XM_007257030.3 mRNA upstream 30808 63321555 ~ 63334868 (+) True dcun1d4
XM_007257028.3 mRNA upstream 50719 63307949 ~ 63314957 (+) True ociad2
XM_007257026.2 mRNA upstream 69990 63290134 ~ 63295686 (+) False ociad1
XM_007257035.2 mRNA downstream 142023 63521545 ~ 63524944 (+) True rasl11b
XM_022664403.1 mRNA downstream 385247 63764769 ~ 63822100 (+) False fip1l1
XM_022664404.1 mRNA downstream 385247 63764769 ~ 63822100 (+) False fip1l1
XM_022664402.1 mRNA downstream 385248 63764770 ~ 63822100 (+) False fip1l1
XM_022664401.1 mRNA downstream 385249 63764771 ~ 63822100 (+) True fip1l1
TU40713 other upstream 19983 63335734 ~ 63345693 (+) True G30362
trnad-guc_4 other downstream 1694079 65073601 ~ 65073672 (+) True trnad-guc_4
trnad-guc_5 other downstream 1695049 65074571 ~ 65074642 (+) True trnad-guc_5
trnad-guc_6 other downstream 1695594 65075116 ~ 65075187 (+) True trnad-guc_6
trnad-guc_9 other downstream 1718980 65098502 ~ 65098573 (+) True trnad-guc_9
trnad-guc_10 other downstream 1719769 65099291 ~ 65099362 (+) True trnad-guc_10

Expression Profile