RNA id: XM_022664401.1


Basic Information

Item Value
RNA id XM_022664401.1
length 2534
RNA type mRNA
GC content 0.48
exon number 16
gene id fip1l1
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 63764769 ~ 63822100 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTCACTTCCTGTGTGCTGGAGagagttagtgagtgagtgagcgtgCGCGTGGTCGCTCGCTCGCCCTCGTGTCCGCTCCGTGTCCCTGGAAACGCCGCCGCGGCCGCACAGCCCGGCCGTCGTGGCGCTGACAGCTGCTCAGACCGCTCGCTCCACAGCCCAGCTTACATTGACCCAGTCCCAGTTCACCCAGTAAACTCCACACACGCCCAGAATGACCACTGAGGGAGCGGGGAGAGCAGGCTGTGCTAGTGGGGATGACGAGGAATGGCTTTATGGAGAGAACGACGAAGAAGATGATGCCAATCCTGCTGTTGACAACGATGATGAGAAGACCGAGACTGAAGTGTTCAGTGCGCTGGTCGGAGAAGTGGAAGATGTCAATGGGACAGCCAGCCAGGAAGGTGATGAAGAGAGTGACTCAGACAGTGACGATGATAACGAAGTGTGTGTTACCATCGGCAACATCAAAAGGGGTAGCAGCCAAAGCATTAGCAGTAGCACTCCTGTCAGTTTTAACATAAAGGCCTCCAGCAGATCCACTTTGTCAGCCAGAGGAGTGGATCTAGACGCTTCAGGCAGCATCAGTGGTGCTTCTGTCCTGGAGCCGGGTGAGGAGTCATTTGAGGAGAAGCCTTGGAGGAAGCCAGGTGCGGATCTGTCTGACTATTTTAATTATGGCTTTGGTGAGGACACCTGGAAGGTGTACTGTGACAAACAGAGGAGAATGCGCATGAGTCTGGAGGTCATGACTTTGGGCTCCTCCAGCAAAACCATGgtGAATTATGATCGTGGTAATTGCCCCTCTGTACTTGATTCTTCCACCAGGAAGACAGACACCTCCATCAACGTCACTCCAGGACAGACAGGAACCATAAGCCGCGTGGAAGGGCGAAGACGTGCAGAAGAAAATGACACAAACGttggtgtgcAGTCCTCGGATGCTGAGTTCCAATCCACCAAGCCGCATCCTTTCCTTCCTCTTAATATACCTCCTCCCCCTTTTCCCCCTTTCCCCATCAGCACCACTCCCTCTGTCATCCCACCCCCTCCACGACTGCCCATAAGAGTGCCACCACCTGgttttCCTATTCCTCCTGGGGCACCTTCTCCTCCCTCCGCCATACCGACATTAGACAGCAGCCGTTCAGGGGGGAGTTACGATGGCCGTTCTGCCCACTCATATCCTTTTTCTGCAGGTGTATTCCCACCTGTTCTTGGGAGTGTGGGTTCCTGGCTTGATTTGATGGACAGTGCCAAAGCAAGCAAATACTACAGCCATCatgacaaaaagagagaaagggtgagggacagagagagggagtggacccgcgacagagaaagagaacggGAGAGGAACAGAGAGCGGCAGCGTGATCGAGAACACACTCCCGCGTGTCAGGGCCGCAGCAGTGATGAGGAGTGTGTAATGAGGCACAGGGATCACAGTGatcgtgagagagagagacatcggGAGCGCAGTGGTagagcagaggagagagaggaccGGTATCGCGAGAGAAGACACAGGGAGCACAGCGAACGTCATAAACCCTCACGCAGCAGCTACAGCAGGAGAAGACACGCCAGCGACGCCGAAGAGAGCCACAGGAGACACCGGCACAAGCGCTCCAGACGCACCAGAGAGAGCACCGAGCCCAGCGAGGAGCACAGCGCCCGAGCACGACAACCAATCAGAGGCCACTGAAGCCTAGCTTTATAGAGgggtcttatttttttattattatttttttaattctctctTAAGCCCAACAGCCAAGCAGTGTCTGAGGAGGGCCATTTTTCATTTGGGCCAGTGAAAGGTCAGGCTCATACAGAGCTAACTTATGTTGTATTTTAAGCTGTTACAGATAAATCCATTTATAGAAGTgctttatcattattatcattattattattattttattaatttagaaacgacagacgaaaaaagaaaaaaaaagtctgagttatttaaaattatttaagtttatttattagaaTTTAATATGATCTAATAAGACATGTTGATTATTTGAAGATGAtaatatggatatttttttgttgtgccaatgttaattttgttgcagtaggaaaacagtaatataaataatttcataaagCAGCCGCTTGAGTGTGTTCATTTATTAGAGCCATTAGAGCAGATTAGCAGCCGCAGTGATATtgactgtgtgtttctctctctagctctctcttgtgcgcgcacacacacacacacacacacacacacacacacacacacacacttatacaaacAATTATACACATCATTGTTATTGTAGGTTTTTTTGGAGAGTAGGTTCTCAATTTGATTTTTGCATGCCAGATATGGAACTTGTATAGGAACTAGTAGAGGAACTAGGTAACataataattaagtaataatacactcgaggatCGTatatgctataatgtgtaatattggcactgctgtgatgcggcTATAGGCACAAGAACCTCCAGTATATTATTGCaaataatttacaatatgtccattgctgctctgtttgtag

Function

GO:

id name namespace
GO:0034587 piRNA metabolic process biological_process

KEGG:

id description
ko03460 Fanconi anemia pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40773 lncRNA upstream 214571 63527521 ~ 63550200 (+) True G30393
XR_002649180.1 lncRNA upstream 296020 63466243 ~ 63468751 (+) True LOC103041812
TU40768 lncRNA upstream 296154 63466275 ~ 63468617 (+) False LOC103041812
TU40763 lncRNA upstream 328789 63433831 ~ 63435982 (+) True G30383
XR_002649739.1 lncRNA upstream 466039 63297863 ~ 63298732 (+) True LOC111191941
TU40942 lncRNA downstream 435014 64257114 ~ 64269674 (+) False kit
TU40949 lncRNA downstream 484015 64306115 ~ 64306424 (+) True G30517
TU40981 lncRNA downstream 600401 64422501 ~ 64422895 (+) True G30539
TU40982 lncRNA downstream 601409 64423509 ~ 64425402 (+) True G30540
TU40985 lncRNA downstream 632674 64454774 ~ 64456432 (+) True G30543
XM_007257035.2 mRNA upstream 239827 63521545 ~ 63524944 (+) True rasl11b
XM_022664370.1 mRNA upstream 385249 63365674 ~ 63379522 (+) False spata18
XM_022664364.1 mRNA upstream 385249 63365676 ~ 63379522 (+) True spata18
XM_007257029.2 mRNA upstream 429903 63319256 ~ 63334868 (+) False dcun1d4
XM_007257043.3 mRNA downstream 273550 64095650 ~ 64097660 (+) True gsx2
XM_007257058.2 mRNA downstream 280181 64102281 ~ 64104332 (+) True LOC103022002
XM_022664435.1 mRNA downstream 289619 64111719 ~ 64144324 (+) True pdgfra
XM_022664441.1 mRNA downstream 409144 64231244 ~ 64269695 (+) True kit
XM_022664446.1 mRNA downstream 409144 64231244 ~ 64269695 (+) False kit
TU40713 other upstream 419078 63335734 ~ 63345693 (+) True G30362
trnad-guc_4 other downstream 1251501 65073601 ~ 65073672 (+) True trnad-guc_4
trnad-guc_5 other downstream 1252471 65074571 ~ 65074642 (+) True trnad-guc_5
trnad-guc_6 other downstream 1253016 65075116 ~ 65075187 (+) True trnad-guc_6
trnad-guc_9 other downstream 1276402 65098502 ~ 65098573 (+) True trnad-guc_9
trnad-guc_10 other downstream 1277191 65099291 ~ 65099362 (+) True trnad-guc_10

Expression Profile