RNA id: XM_022664573.1


Basic Information

Item Value
RNA id XM_022664573.1
length 1838
RNA type mRNA
GC content 0.49
exon number 10
gene id LOC103037884
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 64712173 ~ 64728301 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atattttttttttacattaaacccAAATCACACAGCTGGAACTGGGGGTCGCTGGTGGCTTTAAACGTGTCTCTTGTTATTTATCTCACTTTAAATTAGTACAACTCCAGCTTAAGTTGGCTCACTGGACTTTTCTctgactgtgattaaaaacacgTTGTTTGCTCTGAAGAAAAAGAGAACGATATTCCCCACGTGGTGAAGAAGATGGCGGCGTGACTCTGATTGGTGTTTATAAATCGGCAGAGTGTCGTAATCGGTGTTCACAATACTTAAAACAGTGCTggctctctttctcctcctctcctctcccaaACTTTCCTCCACTGCTCCTCCAGCGGTCTGTCTACTCCTCCTCACAGGGCATACGATTTGCTACAGAAATGGCGTCTGTAACCACAGATCTGAAACTCGGAAAGAAGCTGAACGAGGGAAAGACCAAGCAGATCTTCGAGCTCCCGGGCGAGCCCGGTCATGTTCTGGTTCAGTCCAAAGACCAAATCACGGCGGGCAACGCTGTGAGGAAAGACCAGATGGAGGGCAAGGCCGCGATTGCCAATAAGACCACCAGCTGTGTGTTTAAACTCCTGCAGGAGGCTGGCGTTAAGACTGCTTTTGTGAGGCAGCATTCAGACACAGCGTTCGTTGCCAGCCATTGTGAGATGATTCCCATCGAATGGGTCTGCAGGCGCATTGCCACAGGATCCTTCCTCAAGAGGAACCCAGGGGTCAAAGAAGGCTACCGCTTCTCACCACTGAAGTTGGAAATGTTTTTCAAGGATGATGCTAACAATGACCCACAGTGGTCAGAGGAGCAGCTGCTGGCAGCTAGCTTTGACTTGGCAGGTGTGTCCATTGGTCGCTGTGAGGTGGACATCATGAGCAAGAGCACAGTTGCTATCTTTGAAATACTGGAGAAGGCCTGGGCAACCCAGAACTGCACCCTTGTGGATATGAAGATTGAGTTTGGCATCAATGTGGCCACCAAGGAGGTTGTTCTGGCTGACGTGATTGACAATGACTCGTGGAGGCTGTGGCCTGCTGGAGATCGCAGCCAACAGAAAGACAAACAGGTTTACAGGGACCTAAAAGAGGTCACTCCTGAAGCTATGCAGATGGTGAAGAGGAACTTTGAATGGGTGTCTGAGCGAGTACAGCTGCTTCTGGAACCACAATCAAGTGGAAGGGTTGTAGTGCTGATGGGCTCGACTTCTGACATGGCTCACTGTGAGAGAATCCGCAAAGCCTGCAGCTCATACGGAATCCCCTGTCACCTTAGAGTCACTTCTGCGCACAAAGGCCCCGACGAGACTCTGCGTATCAAAGCTGAATATGAAGGTGATGGAGTTCCCACAATTTTTGTAGCTGTTGCTGGAAGGAGTAATGGTTTGGGTCCAGTGATGTCAGGAAACACAGCTTATCCTGTCATTAACTGCCCCCCTGTTACCCCTGACTGGGGTGCACAGGATGTCTGGTCATCTCTTCGTATGCCTAGTGGTCTCGGGTGCTCCACAGTTCTGTCTCCCGATGCTGCTGCCCAGCATGCTGCTCAAATCCTCGGCCTCACGGACCACCTGATCTGGGCCAAACTGCGAGCCTCCATGCTGAACACCTGGACCTCCCTAAAGCAGGCTGACAAGAAGCTTCAGCAGTGCAGCATTTAAACCAACATCATTGCTCTTCAAACTCAATTCCATTCCAGATGTTTTAATCTTTCCATTGCTCACCTGTACTCACAGCTGTCATTTATTGTTGATGGAAGCTTGTGAATAAATTCAGTGCCTTTATTAACAGGTTCAATTTTTCATCTGTACATGCCAAGAATAAATAGATTCATA

Function

GO:

id name namespace
GO:0006189 'de novo' IMP biosynthetic process biological_process
GO:0043473 pigmentation biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0009790 embryo development biological_process
GO:0005524 ATP binding molecular_function
GO:0004639 phosphoribosylaminoimidazolesuccinocarboxamide synthase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41109 lncRNA upstream 412 64709323 ~ 64719038 (+) True G30640
TU41083 lncRNA upstream 97112 64615427 ~ 64622338 (+) True G30617
TU41081 lncRNA upstream 105342 64612960 ~ 64614108 (+) True G30615
TU41042 lncRNA upstream 173328 64544303 ~ 64546122 (+) True G30589
TU41041 lncRNA upstream 176029 64542115 ~ 64543421 (+) True G30588
TU41133 lncRNA downstream 1769 64730064 ~ 64822659 (+) False G30644
TU41145 lncRNA downstream 23938 64752233 ~ 64774978 (+) True G30652
TU41146 lncRNA downstream 25231 64753526 ~ 64755851 (+) True G30653
TU41160 lncRNA downstream 60826 64789121 ~ 64791799 (+) True G30664
TU41112 lncRNA downstream 83084 64811379 ~ 64819664 (+) False G30643
XM_007259513.3 mRNA upstream 16910 64694962 ~ 64702540 (+) True LOC103038194
XM_022664548.1 mRNA upstream 45939 64629173 ~ 64673511 (+) True kiaa1211
XM_022664587.1 mRNA downstream 3364 64731659 ~ 64742240 (+) True LOC103042444
XM_022664596.1 mRNA downstream 3364 64731659 ~ 64742240 (+) False LOC103042444
XM_015608431.2 mRNA downstream 14359 64742654 ~ 64749709 (+) True LOC103042125
XM_022664623.1 mRNA downstream 74929 64803224 ~ 64810333 (+) True LOC103041822
XM_022664626.1 mRNA downstream 98400 64826695 ~ 64834077 (+) True LOC111190912
TU40713 other upstream 1373757 63335734 ~ 63345693 (+) True G30362
trnad-guc_4 other downstream 345306 65073601 ~ 65073672 (+) True trnad-guc_4
trnad-guc_5 other downstream 346276 65074571 ~ 65074642 (+) True trnad-guc_5
trnad-guc_6 other downstream 346821 65075116 ~ 65075187 (+) True trnad-guc_6
trnad-guc_9 other downstream 370207 65098502 ~ 65098573 (+) True trnad-guc_9
trnad-guc_10 other downstream 370996 65099291 ~ 65099362 (+) True trnad-guc_10

Expression Profile