RNA id: XM_022664648.1


Basic Information

Item Value
RNA id XM_022664648.1
length 1999
RNA type mRNA
GC content 0.42
exon number 10
gene id LOC103035382
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 64869851 ~ 64876715 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGTTTTACCCCCCTTATATTTGGTCttatctcttctttctctctcgccaCAGGAACTACTGCCGATGCACgacacacacaaatgcaaacATACAGAGCCTTTACTTACACATACGCACAAAACCTAAGGATTAAAGAAGAGTTAAATTGCAGTTGATAAACTCTATAGTTGAAACTGGCCTAGGCTGCTGCTTTCTAAATCATTTACTCTGAAGAGGTGTTGGCTATGATTTTGCATGCCTTATTTGAGCTGTTTGGTGTTAAAGGCTGGTTAATAATCATTTCAGTTTTCTTGATCCTGATCGATTATATTCAGAACAAAAATCCACCTAACTTTCCTCCAGGACCACGGCCTTTACCTTTCTTGGGAAATGTCTTCACTGGAGTTGACTATAAAACTATGGACAAGCTTGCTGAGAAATTTGGGAATATTTTCAGTCTGCGGAGAGGAAGTACTAAAATAGTGTACGTTTCTGGATATAAGGCGGTGAAGGAAGCTCTTGTCACAAAAGTGGAAAGCTTTGCCCGTTTTGTTACACCTCTGTTTAATGAAATATACAAAGGAAGAGGTGTGTCATTCAGCAATGGCTACTCATGGAGGAAACAGCAGCAGTTTGCTGTTAGCCACCTGAAGAACTTTGATGAAGGGAAAAggactctggaaaaaaacatccAGCGAGAGAGCCATTTCCTCTCTGAGGCATTTAAAGAGGAACAGGGCTGTCCATTTGATCCTCTGCTCAAAATTAATAACGCAGTGGCCAATGTGATCGGCACCCTGGTCTTCGGCCATCGTCATGAGTACGATGACATTCAGTTCCAGAAACTTCTACGGATGAGTGCAGAGTCGGTGTACCTCACTGGCTCTGTGTGGAATGAGTTGTACGATGCATTCCCCAGCATAATGAGGAGAATACCAGGACCACATCACACTATAATCAACAACTACAAAACACTTGCAGCCTTTCTGAAAGAagagattaacaaacacaaactcGACTGGAATCCTGATGAGCCTCGGGATTACATCGATTCCTACTTAGCAGAAATTGAGAAGagaaagacagacaaagaggCCCAGTTTGATGTGGACAATCTGGCACTGTGCATGGTGGACCTGTTCGAGGGAGGAACTGAGACCACAACCAACTCTTTACGCTGGGCTCTTCTCTACATGATTAAATATCCACTAATTCAGGAGAAGGTCCAGGAGGAGATTGACCGTGTTGTTGGACGTTCACGTTTACCCACTCTGGCAGACAAGGCCAACATGCCGTACACCAATGCTGTCCTTCATGAGGTGCAAAGGAAAGGCAATCTTGTTCCACTAAATATGTCCAGGGTGACCATAAAGAACTCTACACTGGGAGGCTACTTTATACCAAAGGGAACAATAATGATCACTAACCTCTCCTCCGTGCTGTGTGATAAGAGTGAATGGGAAACACCAGATATCTTCAACCCTGGACACTTTCTGGACTCGGAGGGCCGCTTCCACAGACAAGatgctttctttgcattctcTGCAGgtAAGAGGATGTGTCCTGGAGAGTATCTGGCTCGTGTGGAGCTATTCCTCCTCTTCACCATCCTCCTTCAGACCTTCACTTTTAGTCCTCCTCATGGTGAAGAGCCCAGTCTGGAAAGTCAGCTCGGCTTTACACAGGCCCCAAAGGCATACAAGTTGTGTGCTATCCCAAGATAAAATCAtgtatagtGTACAGTACTTATTTAATTGAGACTTTCTGGATGCTGTAGTGCTCTCTTCACATTTTATAGTGAAAAGTAATTATAGTGTGTAAAACTGTTGGAATAATTCTATATTAGctctatattttaaatagatttaaatgttttaaattatggacctgttatatatatatattaatctacacacccCTTTCTCTACTTCATAGCACATTCTGCATGCTTACACTTTTTCTGTGAATGATTTGtcagtacaatgtaaatataaataaaatacagaaacaaattgtaa

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41139 lncRNA upstream 37014 64720955 ~ 64832837 (+) True G30646
TU41114 lncRNA upstream 45702 64811379 ~ 64824149 (+) False G30643
TU41113 lncRNA upstream 45702 64816437 ~ 64824149 (+) False G30643
TU41122 lncRNA upstream 45702 64816722 ~ 64824149 (+) False G30643
TU41115 lncRNA upstream 45702 64816941 ~ 64824149 (+) False G30643
TU41192 lncRNA downstream 15683 64892398 ~ 64909454 (+) True G30683
TU41219 lncRNA downstream 87597 64964312 ~ 64967406 (+) True LOC111190945
XR_002649265.1 lncRNA downstream 89922 64966637 ~ 64982401 (+) False LOC111190945
TU41224 lncRNA downstream 107763 64984478 ~ 64987306 (+) True G30710
TU41204 lncRNA downstream 155892 65032607 ~ 65045678 (+) False LOC103033886
XM_007259506.3 mRNA upstream 1438 64859330 ~ 64868413 (+) True LOC103036008
XM_015608428.2 mRNA upstream 13026 64848648 ~ 64856825 (+) True LOC103041527
XM_022664626.1 mRNA upstream 35774 64826695 ~ 64834077 (+) True LOC111190912
XM_022664623.1 mRNA upstream 59518 64803224 ~ 64810333 (+) True LOC103041822
XM_015608431.2 mRNA upstream 120142 64742654 ~ 64749709 (+) True LOC103042125
XM_007259503.2 mRNA downstream 4223 64880938 ~ 64890653 (+) True LOC103035066
XM_007259501.3 mRNA downstream 49820 64926535 ~ 64934468 (+) True LOC103034427
XM_007259499.3 mRNA downstream 145704 65022419 ~ 65046978 (+) True LOC103033886
XM_007259496.3 mRNA downstream 185109 65061824 ~ 65067398 (+) True mmachc
XM_022678446.1 mRNA downstream 201065 65077780 ~ 65086780 (+) True LOC103031672
TU40713 other upstream 1524158 63335734 ~ 63345693 (+) True G30362
trnad-guc_4 other downstream 196886 65073601 ~ 65073672 (+) True trnad-guc_4
trnad-guc_5 other downstream 197856 65074571 ~ 65074642 (+) True trnad-guc_5
trnad-guc_6 other downstream 198401 65075116 ~ 65075187 (+) True trnad-guc_6
trnad-guc_9 other downstream 221787 65098502 ~ 65098573 (+) True trnad-guc_9
trnad-guc_10 other downstream 222576 65099291 ~ 65099362 (+) True trnad-guc_10

Expression Profile