RNA id: XM_022664860.1


Basic Information

Item Value
RNA id XM_022664860.1
length 2982
RNA type mRNA
GC content 0.46
exon number 12
gene id LOC103025553
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 65869348 ~ 65886738 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAGAGTTTCAGAAAAAAGTCTTGGCCAAATTGGTGGATATCCACTTAGAGGTCAGAAGGGTGGGAAGAAGTGAGCCTACTCTTTCATCTGCCAATATAAAGCAGCTGGAGACAATGGAGGAGTTTGAGAGGGAGGAGGAATGCCTCAAGGACAAGCCAACCTTTGAATCCCTGGTGTTACAACTTGCAAGAATTGGTGGGAAAGATGTAAGAGACTGTGTCCACAAAATTCTTGACAGGCTCTTCACCAACCAGTTGATGGCAAAGTTCAATATGAAGGGGAAAGGGAAGAAGCATAAACTGCCTCTGGAGACAACAAACATATATGAAGCAATAAGAGGTCTCTGCAGACTACCCGGGGTAAATGTCCTGCAGTTGCTTTGATTACGCAACAATTTGCTGCTCTCAGTTCTCTGCCAGACGATATAAAGGCTTCTGATTGTCCTCAGGATGGCTCGGCGGGTAGCTGTGATTGGAGCGGGCAACGCTGGACTGACCTGCATTAAGTGCTGCCTGGACGAGGGGCTGGAGCCTGTTTGCTTTGAGAGCAGTGATGACATTGGAGGACTCTGGAGGTTTAAGGAGACACCAGAGGCTGAGTGTGCCAGCATTTACCGTTCACTGGTTGTGAACACCTCCAAAGAGATGATGTGTTTCAGTGATTTCCCCATGCCAGCTCACTACCCAAACTACATGCCCCACACACTGTTGCTACAGTACTTCAGACTGTACGCAGAACACTTTAACCTGCTCAAGCACATTCAACTCCAGACCAAGGTGCTCAGTGTGAAACAGCGGGATGACTTCTCTTCCTCGGGTCAGTGGGAGGTAGTAACTGAGAGTAGAGATGGTCACAAAGAAACGCAGGTGTTTGATGGTGTGTTAATATGTTCTGGGCACTTCTCACATCCTGTCACACCCCTCTCAGCATTCCCAGGCATTGACACGTTCCCAGGAAAATATATCCACAGTTGGGAATATAAGGACCCTGATCCATTCCGTGGACAACGAGTGGTGGTGGTTGGCATTGGCAACTCTGGAGTAGACATCGCTGTTGAGATCAGCAGAGTAGCAGAGAAAACTTTCCTGAGTACACGCGAAGGAGGATGGGTGGTGGGCCGCATGGCTGGCAGTGGTCTGCCACTAGACATCATGGTGAATAGACGCTTTCTTGCCATGCTGCTCAGGTTGCCTCCTCGATCGTTAGTTAACTGGGCAGCGGAGAGAAGCTACAACAAGAAATATGATCACAGGCTGTACGCACTTCAGCCCAACTACAGGATACTCGACCGACGACCCATCATTAACGATGACCTGCCAGGGCGCATCATCCAGGGAGCGCTACAGATTAAACCAAACATACAGCAGTTCCGTGGCTCCTCTGTTGTGTTTGATAATGGAGTGGTAGAGGAAGGGATTGATGCAGTAGTCTTCTGCACTGGATACAAGGCCACCTTTCCATATCTATCCCCCTCCATCTACAGCGGGCCTGAGGGGGGAATGAGCCTCTATAATAAAGTCTTTCCTCTGAGTCTGGAGCATCCAACACTAGCCATCATTGGGCTACTCAATGCCACAGGCTCTCTAATGCCTGTAGCTGAGATGCAGGCACGATGGGCCACCAGAGTCATCGCAGGACTCAACCACCTTCCTCCTTTGGCAACAATGCAGAAAATGATTGGGAAGGAGATGAAAGCAAAAATAAAGAGATATGGTTCTGTCAAGAAGGCTGCTCTGGAGGTGGATTACATTCCTTACATGGATTCCATCGCACAGGAAGTGGGTGTGCGTCCCAATCTCCTGTATCTGTTCTTGACCGATCCTGGTTTGGGTTGGAGGGTGCTGTATGGTCCTTGCACGCCATTTCAGTATCGGCTACGTGGGCCAGGCCGCTGGACTGGGGCTCGCCAGGCCATCTTTACCCAGTGGGAGCGTGTGGTCCAGCCTCTGAAGACACGGCCCATTCCAGAGCCCAACATCTCTGGCCCATCCTTTTGGAGTCTGACAGGAGGGGCTGCAGTGATTTTTGCCATCATTGTTCTACAAAAGAGTGTTCCAGTTTTCCTTCAGGATCGGGTTGCATCGATAGCCTCTCTCATGACTTACATTGAGTCTGTATTAGGGTGGAGAAATGTGTGATTCAAGTCAGGGCACTCAGATTTGCTCTTGTAGTTTAATTAATGATCCTGTATTGTATAAATGATTTTCCATCACttcctaataaataaaaagtgtgacATACAATTCCCAGTGTGACATACAATTGTATACAAGTCACAAATTCTTACAGtaaaggaaatatgtatttaatcCCTTGCTGGTTGTTTGTCTATTgacaaagacatgaacagtcTATAATTTTAGGGGTTGGTTAATTTAAACAATGAGatagaatatcaaaaataaaatccagaatatcacattgtataaattatatacatttatttgcattttgcagagagaaataagtatttgatccctctggCAAACAAGACTTGGTGGCAAAACTCTTGTTGGCAACACAGGAATCAGACGTTTTTTGTAGTTGATGATGAGGTTTGTGCACATGTCAGGATGAATTTTGGTCCATTCCTCTTATGTGATCAACTTTAAATTATTACGATTTTGAGGCTGTCGCTTAACAATTCGGagcttcagctccctccataagTGTCTGTGGGATTAAGCTCTGGAGACCAGCTAGGTCACTTTATGACCTTAATGTGCTTCTTCTTTTTGAGCCACTCCTTTGTTGccttggctgtatgttttgggtcattgtcatgctggaaggcCCAGCCATGACCCATTTTTAATGTACTGGtagttacacactgcttttagataactttttatcactccttgtgcaaaagttcaaagagttcagtttggtttgatggcttgtgatcatccatcctcctcttgattatattccaggggttttcaatttggtaaaataaaggaAACTCATGTATTAAAAGCA

Function

GO:

id name namespace
GO:0005783 endoplasmic reticulum cellular_component
GO:0016020 membrane cellular_component
GO:0004497 monooxygenase activity molecular_function
GO:0050662 obsolete coenzyme binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K00485 FMO; dimethylaniline monooxygenase (N-oxide forming)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41622 lncRNA upstream 22201 65837418 ~ 65847147 (+) False G30997
TU41624 lncRNA upstream 22201 65837418 ~ 65847147 (+) True G30997
TU41641 lncRNA upstream 34069 65833104 ~ 65835279 (+) True G31009
TU41634 lncRNA upstream 134639 65734480 ~ 65734709 (+) True G31004
TU41616 lncRNA upstream 153571 65715567 ~ 65715777 (+) True G30995
TU41761 lncRNA downstream 125444 66012182 ~ 66018251 (+) True G31090
TU41762 lncRNA downstream 178615 66065353 ~ 66066097 (+) True G31091
TU41798 lncRNA downstream 193166 66079904 ~ 66080258 (+) True G31119
TU41802 lncRNA downstream 388428 66275166 ~ 66275599 (+) True G31123
TU41836 lncRNA downstream 456596 66343334 ~ 66394105 (+) True G31149
XM_007259475.2 mRNA upstream 7220 65854934 ~ 65862128 (+) True plpp6
XM_007259480.3 mRNA upstream 378527 65456737 ~ 65490821 (+) False fam20b
XM_022664809.1 mRNA upstream 378527 65458458 ~ 65490821 (+) True fam20b
XM_007259486.3 mRNA upstream 415040 65250853 ~ 65454308 (+) True ralgps2
XM_022664795.1 mRNA upstream 415040 65250855 ~ 65454308 (+) False ralgps2
XM_022664867.1 mRNA downstream 4192 65890930 ~ 65902416 (+) True LOC103024186
XM_007259468.3 mRNA downstream 21570 65908308 ~ 65931231 (+) True prrc2c
XM_007239518.3 mRNA downstream 102794 65989532 ~ 66006461 (+) True mettl13
XM_007239519.3 mRNA downstream 102794 65989532 ~ 66006461 (+) False mettl13
XM_022664927.1 mRNA downstream 120518 66007256 ~ 66068036 (+) True LOC103035811
XR_002649741.1 other upstream 19586 65849127 ~ 65849762 (+) True LOC111191945
TU41629 other upstream 31983 65828781 ~ 65837365 (+) True G31000
trnad-guc_10 other upstream 769986 65099291 ~ 65099362 (+) True trnad-guc_10
trnad-guc_9 other upstream 770775 65098502 ~ 65098573 (+) True trnad-guc_9
trnad-guc_6 other upstream 794161 65075116 ~ 65075187 (+) True trnad-guc_6
TU42094 other downstream 1327567 67214305 ~ 67215186 (+) True G31355
TU42187 other downstream 1610465 67497203 ~ 67497697 (+) True G31407
TU42315 other downstream 1945082 67831820 ~ 67833215 (+) False hmcn1
TU42422 other downstream 2133302 68020040 ~ 68022934 (+) False LOC103035359
TU42555 other downstream 2939905 68826643 ~ 68827572 (+) True G31702

Expression Profile