RNA id: XM_022665227.1


Basic Information

Item Value
RNA id XM_022665227.1
length 4408
RNA type mRNA
GC content 0.45
exon number 18
gene id swt1
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 67533815 ~ 67579081 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGAGCTGAAGCACTTCCTGTGGGCTGAGTGTGGAGAAGAGCTGCAGCGCTGCTGTGTGAGACTGAGGGGCTGGTGGTGATCCGAGTGTCTCTCTCTGAAAACTGTTCACCACAGGACCGGACTGAGAGTGACCGGGGGCCGGGATCAGGGCTGCTGACAACCAAAATGCCCAAAGAAAgagctaaaacaaaaaaacacaagaaggaaaagaaaagatcGTCCACACCCCGCCGTGAGGATCCAGTGAAGcaTAGAGATGACCACAGCACTCCTGGTGATCCCAAAGATAGAAACTCACACAAGTATGTGGCCAGAAGAAAAAGTAAAGATTATTCACCATATTCGTCAGAagaccacaaaaaaaagaaacatgaaaAATCAGATGGGCAAAAGAAGCAGACAATATGCAAAGAAAGCAGAGCATCTCAGGGCGGTGATCACAGAGCATTTTGTGGCTCAGTGAAACGATCCTCTTCAGGGCATTATGTCCTCAGTCCAGGTAAAAGCTCAGGTGGCCACACTTCATCCAAATCTGATCACAGTGTCTCGTCCAAAAAGCTGGAGGAGCAGAATAAGAGGCTGGTTAAGAAAAGGTCGACACCACTGGAGCCCAAGCAGAGAACACCTGAGGCTGCTGTTCGCTCTGAGGAGAAGAGCAAAAAGCGAGAAAAGAGGATTTCCTCAACAGATGAGGATTATCAAGCAGCAAAGATGCGAAGCATCAAAGAAGGACGGGTTGATATTGATGAGATCTGCCGAAAGTCTAAGGAGTTGAGTCAGCAGAGAAGGAAGCAGGTGGAGAAGAGATCCGAAGAGGCTTTGCCAGTAGAGAAATGCTGTGGTGATAAGAGAGAAAGCAGCCGTTCCAAAGAGGGTTTATCCTCCGTCAAAAATGTGCCATCTGCTGTTATACCTAAAGTTACACAACATGTCAGTCCCAAACAGCAGGATAATGACAGAAAAAGACGACTCTCTGAGGCTACAAGTTGTCCAACCTCAGAAGAAAAGCGGTTATCACATCTTCCTCCTCCACTCACTTTCAAGATCCCAAAGAAACCCAGTGTTCTAAAAGCTCAGACCAACACAGACATTTGGGACAGTATTGATAAAACTCCTGCTGTCTGCAAAAAGACCCCTGCCCCTGTTTCTGTTACCACAagattatcatcatcatcatcatcatcatctacaCTTGCTTCCACAGCTCACAATAAACTGAAACCCTTACCTTTGCTCTCCCGCTCTCGTAAACCCTTTTCTTCACCTAAGGTCCAGCTGCCACATTCTAGTCCGGTGAGGGACTCGAGCTCACCAAGCAACACTCCAACAGATCATGCTGCTTGTCAAGGTACATCAGCAGAGTGCCCTCAAATGTATGACAATGACCAAGAGATGCAGCTGGTTGAAGAGCTACATCTGGCCCGCTTTGACCTGCGACTCCAGGTGAATGTGGGCTATGGAGAGCTTACCTGCATGGATGTGGACCCGCCCGAGGAGGGCAGCACCATTTCACTTAGTGAGGGGCAGCACCAGCAGAATGTCCTAATTGTATTGGACACCAATATTCTCATTAGCCACCTGGACTTTGTAAAGAAGATGCACTCAGATGGACTTGGAGCTCTAGGCTATCCCACTCTGCTTGTACCTTGGGTGGTTCTTCAGGAGCTGGATTCGCTAAAGAATGGGAAGCTGTCCGAGGAAGTAAAGTTAAAAGCCAGAGCACCTGTCCATTATATCTACTGCTGCCTGAAGAGCCAGGTACCTCGTCTCTGGGGCCAGTCCATGCAGCAAGCCTCCCAAATTTTACGTGGACCGGGTATAATGAATAATGATGACCGAGTGCTGCAATGCTGTCTGCAGTACCAGGAGTTGTATCCAGAGGGCACGCTCATTCTCTGCACTAATGATAAGAACCTGTGCAGTAAAGCGCTGCTGAGTGGTGTCAAGGCCCTGAGTAAAGCAGATCTAGTTGAGGAGGCAAATGCAAACCCTGGACTGTTAAATCGCCGCTGTAGCCAACACACTGCCCGTCTGTCTGCAGGGCGCACCAGTGAAGAGCAGAAGAGAAAGCAGTGTAAGGACGAGGAGGTTTCAGAGCAGGaactgtgcgagtgtgtgtctgtgctggaGAGAAACCTGCAGACTGCTCTGTCTGCTGTGCTGGAGGAAGAAATGAAGGCTGCATATGAAGAACTATGGTTGGAGATTGTGTATTTGAAACCTCCCTGGACTTTAAAGTCTgtcctgcagtgttttcagaaGCACTGGATAGCTGTGTTTGGCAGCATCATCCAGAGAAATCTGCTGAGAAGTGTGGAGACGCTCAGCAGCTGTCTTTGCACAGGTGCGCCAGTGGAGCAAAAGTCTGTTTTGACTGCATTGCATGGGGCTGAGGAGCTGCTGAATGCATTTAGCAGCAGGTCTCAGTACAGTGGCCACCTGACCTCTGCTCTCTCCTGCATCCAGAATGTACGACACAAGCTTCTAGGCCAGCCTCAGAAAACTCCAGTGGAGGACACGAGTGATGAAGACACCCTGATGGCTGAGGCAGTGGAGGATATATCACCATCATCCCAGATGTCTCATCAGGAAGTGTGGGCTTTTTTTGAGAGCCTCTGGAACAACTTGTGTCACATCAGCTCGGCTGTGTTCTCGGCACTACACTACTCTCCGGGCTCAGCGGAGACAGTGCAGCCATTCTCCACACCCCCACCTCAGGACGCCCTTGACTATCTTCACAAGCTCTCTGCTGCTGCCAGACAGCTGCTGGAGGCCTTCCAGAGGTTACTCTCTGTGACCAGCAATGTCGGGGACGCTCAGGCCTTGCTCACTGTGATTTTCGATAATAAGattGCCACTGTGGAACCTCAGTTCAGTGCCAAGGACCTCTTTGAATGCCTGTCCCAACCAGACTACAGGGAAAAGCTGTGTGTGGGAGGAGCCCAGCTGATGGAGCTAAGAACAAATCTGGattgctgtgctgctgctgtgtgtggtCGGAGTGGAAGCAATACCTAAACCTGGGATTTAAAAACATCCAAACTACACTGACTTACTGACTATACCAAATATAATAAATGGACATTAATGACATTAATAGATAGTGGGTGCAGAGATGTGACCATAGCCAAAATGTCTCCTTATTGGAGCTACTCTGGACCACCAGACTAACCTCAGTCTGAACACTAAATCATATACTCTTTTAAATTAGGGAGttgttcatgcagcttgaccTTTTCTAGTCAGTTGGATTTCTCTTTGATTTTCTCTTCAAGAAGCTGAATGTAGGCATTATTAGTTTCATGCCGTAAGTTCCATATGAGTAACAAATTTTTTATTGAGAAAACATGCAAGAATCATATTCTCACTGTACCTTGGTTCTGCCTCTTTCGACCAGTTTCTGACCAGTTTAgatttggttttggttttactttaaaaaatctgaaaaaaaagatgcactTCTGTTTACACTTGAATACCGAATAGTATTGAGCTGAGCTTCTGTTGTAGATAGTGGTATTTTTTATGTTGATCCAATATGTAAATAACTTATCTGTCTGAGAACTGAAAAGCTACCTCCAAACGATATGTTTACTAATAGTACAGCATAGATCGTAAGAACCAGCTAAACTCTTAAGTTTCTTTAGCAATACcgtagaagaaccacttttgctTCCAGAAGGAACAATTATGTTTAATAGAGATGTATAGTTAATAGTGAACctattaaaatgaaagaaactttatataatgtattttttttacgcaAATATAAAGGTTTCTCGCTCACAAACCTTCAAAATGGTTCTTCTATAGCATTACTTAAAGAAACTTTAATGTAGCTTCATACAGCAGGCATTTTCCAGTCATATTTGCAATTATTGGGTGAATCTCTTTCATATGCTGTGCAATACTGAAAGTGACTCCAAATTAAAAGACCTGATGTTTTCTTAGTTATCTTTGGATTCGTTCCTGGTTGATGGTATCTAGTCCTCACAGACTCTTTAGAAAGAGTGTTCCATGTGCTCTTTTCAGTGTAGAGTTCAGCCGTTAACACTGTGGGttgtttaaaaacactgaagCCACTGGGCACTTTGATGCTGCTAATTGGTGCTGTAGTGCCTTGCAgatttgacattttttatttacattttagtttttttttaccttttctgGTCAGGCCAGTGATCATAATGCAGGGAACCGAGCAGACACATTAGCTCATAACTAACTGCCCTCCTCATCAGATGACATCATCAGATGGTGTTCGGATGGTGATGTAATGATGCCCACAGGGGTCGTTCATTTCAGGGATGTCAATAATTAATACGCAGACTTGCGTCATTgggcttttctttctcttccacTCTCTTGCTCACTCGTTTGCTCACTTGTGTGCATTCTCtcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42192 lncRNA upstream 16782 67482593 ~ 67517034 (+) True G31410
TU42195 lncRNA upstream 26944 67492744 ~ 67506872 (+) False LOC103027733
TU42196 lncRNA upstream 39831 67492744 ~ 67493985 (+) False LOC103027733
TU42112 lncRNA upstream 179129 67350795 ~ 67354687 (+) True G31370
TU42000 lncRNA upstream 430333 67100372 ~ 67103483 (+) True G31278
TU42278 lncRNA downstream 75068 67654149 ~ 67654605 (+) True G31479
TU42320 lncRNA downstream 281552 67860633 ~ 67862273 (+) True G31512
TU42411 lncRNA downstream 408352 67987433 ~ 67987677 (+) True G31583
TU42428 lncRNA downstream 496116 68075197 ~ 68075581 (+) True G31595
TU42429 lncRNA downstream 517734 68096815 ~ 68097060 (+) True G31596
XM_007255235.3 mRNA upstream 5460 67515932 ~ 67528356 (+) True LOC103028999
XM_007255236.3 mRNA upstream 5460 67515932 ~ 67528356 (+) False LOC103028999
XM_022678471.1 mRNA upstream 26918 67483335 ~ 67506898 (+) True LOC103027733
XM_022678468.1 mRNA upstream 337389 67195516 ~ 67196427 (+) True LOC111194389
XM_022678463.1 mRNA upstream 339764 67193228 ~ 67194052 (+) True LOC111194388
XM_022678477.1 mRNA downstream 112360 67691441 ~ 67844634 (+) True hmcn1
XM_022665254.1 mRNA downstream 299459 67878540 ~ 67929915 (+) True LOC103045824
XM_015601389.2 mRNA downstream 425153 68004234 ~ 68018991 (+) True LOC103035042
XM_007233635.3 mRNA downstream 440961 68020042 ~ 68022940 (+) True LOC103035359
XM_007233636.3 mRNA downstream 444856 68023937 ~ 68042368 (+) True ppp4r3a
TU42187 other upstream 36119 67497203 ~ 67497697 (+) True G31407
TU42094 other upstream 318630 67214305 ~ 67215186 (+) True G31355
XR_002649741.1 other upstream 1684054 65849127 ~ 65849762 (+) True LOC111191945
TU41629 other upstream 1696451 65828781 ~ 65837365 (+) True G31000
trnad-guc_10 other upstream 2434454 65099291 ~ 65099362 (+) True trnad-guc_10
TU42315 other downstream 252739 67831820 ~ 67833215 (+) False hmcn1
TU42422 other downstream 440959 68020040 ~ 68022934 (+) False LOC103035359
TU42555 other downstream 1247562 68826643 ~ 68827572 (+) True G31702
TU42576 other downstream 1565937 69145018 ~ 69161883 (+) True G31718
TU42854 other downstream 2617844 70196925 ~ 70199742 (+) True G31939

Expression Profile