RNA id: XM_022665319.1


Basic Information

Item Value
RNA id XM_022665319.1
length 2734
RNA type mRNA
GC content 0.47
exon number 27
gene id ddx1
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 68339825 ~ 68351833 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TAACTGAATCAAATGCCCACAACACACTCCTCAGCTCGCACCGGCTTTCGCTGTGAAAGCCGGGTTACAGTAATCAGTGTAGTTTAGTATAAGTGTTAAAGGTGTGTGATTTTATCTGGATTAAGGTGTGAAGAGGATCGATATTCCAGAGCAGtgtgaggaggagaaggaggagctgATCTCTCTCAGTAGAGGAGTTCAGTCTGAGTTATTTAGCGCTCTGTCACGGGTGAACATGGCTGCGTTTGGAGAGATGGGCGTGATGCCTGAGATCGCTCAGGCTGTTGAGGAGATGGACTGGCTGTTGCCAACAGACATTCAAGCTGAGTCTATTCCACTGATTCTTGGTGGAGGAGATGTTCTTATGGCTGCTGAGACTGGGAGCGGAAAAACTGGGGCGTTCAGCATCCCAGTGATCCAGATCGTGTATGAAACATTAAAGGATCAGCAGGAGGGGAAGAAGGGTCGTGCTGCAGTGAAGACAGGAGGAGCAGTGTTTAATAAGTGGCAGATGAACCCATATGACAGAAGCCCAGCATTTGctaTTGGCCCAGATGGACTTTGCTGCCAAAGCAGAGAGTTTAAGGAGTGGCATGGCTGTCGTTCCACCAAAGCTGTGACTAAGGgcaAATATTACTATGAAGTCTCCTGTCACGACCAAGGGTTGTGCAGAATTGGTTGGTCCACTAGCCAGGCTGCATTAGACTTGGGTACGGACAAGTATGGCTTTGGCTTTGGAGGTACCGGGAAAAAATCCCACAATAAGCAGTTTGACAGTTACGGAGAGGAGTTTACTATGCATGACACCATCGGATGCTACATAGACATGGACAAGGGCCATGTGTCATTTTCTAAAAATGGAAATGATCTTGGCTTGGCCTTTGAGATTCCACAAAACCTGAGAAGCCAGCCATTCTTTGCCTCCTGTGTGCTCAAGAATGCTGAACTAAAGTTTAATTTTGGAGGAGAGCCATTTAAAAACGCCCCCAAAGAGGGCTTTAAGGCCTTGGACCAAGCGCCAGACGGACATGTGGTCAAATCAAGCCAAACTGGCAGTGCCACAGTGAGCCAGGTAAAATCCAGCTCCAACTCTCCCAGAGCTCTTATTATCGAACCATCGAAAGAGCTGGCCGAGCAGACCCTCAACAATGTCAACCAGTTTAAGAAATACGTGGAAAACCCCAAACTACGAGATCTGCTGATCATTGGAGGAGTAGCAGCCAAAGAGCAGCTCTCTACTTTGGAAAGTGGGGTTGATATAGTTGTTGGCACACCAGGCAGACTGGATGACCTCATATCTACAGGGAAGCTGGATCTGTCCCAAGTCCGCTTCCTGGTTCTGGATGAGTGTGACGGGCTTCTCTCAGCTGGGTACACTGACTTCATCATGAGGGTCTTCAACAAGATCCCTCAGGTCACCTCAGATGGAAAGAGGCTACAGGTCATTGTATGTTCGGCTACACTGCACTCATTTGATGTGAAGAAGCTCTCAGAGAAGATCATGCACTTCCCTACCTGGGTTGACCTGAAGGGGGAGGATTCTGTCCCAGAGACTGTCCATCATGTGGTGGTGCCTATCAACCCCAAAAATGATCGGCTTTGGGAGAGACTTGGCAAGAACCATATAAGGACTGATGAGGTTCATgccaaagacaacacaaggCCTGGAGCTAACTCTGCAGAGATGTGGTCAGAGGCCATAAAGATCCTGAAGGGAGAGTACGCAGTGCGGGCCATCAAAGAGCACAAGATGGACCAGGCCATCGTCTTCTGCAGAACCAAGATCGACTGCGACAACATGGAGCAGTACTTCATCCAGCAAGGAGGAGGTCCAGATAAAAAGGGACATCAGTTCTCATGCGTCTGTCTCCATGGTGACAGGAAGCCCAACGAGCGTAAAAACAACTTGGAGAGGTTCAAGAAACGTGAGGTGAGGTTGCTGATTTGCACAGATGTGGCTGCCAGAGGAATCGACATCCATGGTGTTCCATATGTGATTAATGTGACTCTGCCAGATGAGAAACAGAATTATGTGCATCGCATTGGAAGAGTTGGCAGAGCTGAGAGAATGGGTCTGGCCATTTCCCTGGTGGCCATGGAAAAGGAAAAAgtgtggtaCCATGTCTGTGCTAACAGAGGGCGAGGCTGTTCTAACACCAAACTGAAGGAAGATGGAGGCTGCACTATATGGTACAATGAAAAAGAGcTGTTGGGAGATATTGAGGAACACTTGAAGTGCACCATTACGCAGTGTGAGCCGGACATCAAAGTGCCTTTGGATGAATTTGATGGCAAGGTCACCTACGGCCAGCgcagagctgcaggagGTGGTCTCTATAAGGGGCATGTTGATGTACTGGCTCCCACTGTACAAGAACTGGCTAATCTTGAGCGGGAGGCACAAACCTCTTTCCTGCACCTGGGATACCTCCCCAACCAGCTCTTCAAAGCTTTCTAAGCAGCACTTCTCCACACCATAGACCATTAGTGTTTAAAAGGAAGTTCAAACACTAAATTAAGAGCTGTTTCATTCATGTTGTTAAATTGttagattaatataaatattaatctatggtttttcttcatttcattatttcattagtAATATTCAATAAGTAATAATTTTTTTGAAGGCCttaaaaaggtattttttgtttgtttttgttggttGATCTTGCACTCCTGTAAGACCTCTGAAGTGTCAATTCTGCAAAATAAACTGTTAACTGCATTA

Function

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K13177 DDX1; ATP-dependent RNA helicase DDX1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42470 lncRNA downstream 42757 68296864 ~ 68297068 (-) True G31630
TU42453 lncRNA downstream 308835 68029478 ~ 68030990 (-) True G31616
TU42431 lncRNA downstream 316938 68020087 ~ 68022887 (-) True G31598
TU42401 lncRNA downstream 396672 67942909 ~ 67943153 (-) True G31573
TU42400 lncRNA downstream 397118 67942497 ~ 67942707 (-) True G31572
TU42537 lncRNA upstream 434567 68786400 ~ 68787002 (-) True G31686
TU42562 lncRNA upstream 474603 68826436 ~ 68827522 (-) False fam84a
TU42679 lncRNA upstream 706921 69058754 ~ 69059080 (-) True G31782
TU42703 lncRNA upstream 927835 69279668 ~ 69281508 (-) True G31803
TU42718 lncRNA upstream 995200 69347033 ~ 69347700 (-) True G31817
XM_007233633.3 mRNA downstream 109996 68223824 ~ 68229829 (-) True mycn
XM_007240737.3 mRNA downstream 357897 67973225 ~ 67981928 (-) True LOC103046744
XM_007240735.3 mRNA downstream 367467 67968136 ~ 67972358 (-) True LOC103046427
XM_007240734.3 mRNA downstream 399112 67932560 ~ 67940713 (-) True LOC103046133
XM_007240732.3 mRNA downstream 477512 67855606 ~ 67862313 (-) False arpc5
XM_015601387.2 mRNA upstream 474156 68825989 ~ 68828226 (-) True fam84a
XM_022665339.1 mRNA upstream 744421 69096254 ~ 69140809 (-) True scml4
XM_022665330.1 mRNA upstream 744421 69096254 ~ 69140794 (-) False scml4
XM_022665333.1 mRNA upstream 744421 69096254 ~ 69140498 (-) False scml4
XM_022665344.1 mRNA upstream 744421 69096254 ~ 69117203 (-) False scml4
TU42459 other downstream 248244 68091220 ~ 68091581 (-) True G31622
TU42346 other downstream 477553 67855647 ~ 67862272 (-) True arpc5
trnat-agu_1 other downstream 681174 67658579 ~ 67658651 (-) True trnat-agu_1
trnai-aau_2 other downstream 681572 67658181 ~ 67658253 (-) True trnai-aau_2
trnai-aau_1 other downstream 682127 67657626 ~ 67657698 (-) True trnai-aau_1
TU42561 other upstream 476152 68827985 ~ 68829020 (-) False fam84a
XR_002649364.1 other upstream 793475 69145308 ~ 69161904 (-) True sec63
TU43425 other upstream 2737042 71088875 ~ 71089461 (-) True G32343
trnat-ugu_81 other upstream 2744798 71096631 ~ 71096703 (-) True trnat-ugu_81
TU43449 other upstream 2786653 71138486 ~ 71142338 (-) True G32364

Expression Profile