RNA id: XM_022665877.1


Basic Information

Item Value
RNA id XM_022665877.1
length 3210
RNA type mRNA
GC content 0.45
exon number 20
gene id mysm1
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 71302470 ~ 71314476 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cacacacactcacaaggGGATAAGTatgtaacgttagctaaatGAATACAGATATAACCTTTATAAGAGCGTTTTCTGCTGGAAATATTCACGACAGTTGTTAAGTGACCTGTCTGGAGTTACTGGAGCTATGATCTTACAGGATCAGTATTTACAGTCAGCCTGGAGCACCAGCACTGCTATCCTGCCCTGGACCCTCGACAGCTCAATCAGTGATGAGAACAGAGAGGTCATTGAGAGCATGCTGTTGGAAGAACAATATTATTTTGCTGGTAAGAAGGCACCTAAAGTGGCATGGACTGGAGATAagccaaaagtaaaaaaGTCACCAGTGAAGAGCTCTGGAGCTCCAGCTCGTTGGGCACAAGAGGAAAAGGATCTTTTTGAGAAAGGACTGGCTCAGTATGGGCGGAGGTGGACCAAGATTGCAAAACTAATTGGCTCAAGGACTGTTCTTCAAGTAAAGAGCTTTGCCAGGCAGTACTTCAAACACAAGGCTAAAGCTGAAGGTCCTACTGAAGAGTCATCTGCCAAAACACAGAGTTCACTACTTCACACCTCATCCTCTGGATCAAAAACTCTTTCTGTCCAGCCACACCTCCCTGTGCTGGCCAACACTATACGCATCGAACAGCTGTCCGACGATGAGGATGTTGACATCACTGATGACCTCAGTGACAGTGCATCCCAACCAGAGAACCAGTTAGACCAAGCAGATGAGCCCAAAGGTTTTCAGGATCTGCATGAGCAAGAACATCCTGTTTTAGTCATTTCCTCTACAGACAGAGTgaagaaacactttttaaatccGGGCGAATTGTCTGTCGGACCAGCAGATTTGAGCCTTAAGGTTAACGGCAGCCCTCAGTCAGTGGAGGAACTAGAACCTGGAGAGCATAAAGAGGAATATCTCTGTGACGATAGCCCCGAAACATGTACTCTGCCCGGAGATGAGCGTGCTGAAGaAAAGGTGGAAGGTGTTGCCATGGAGGAAACAGAAGAGGaccaggaggaagaggaagagctgAAGGCTCCTGAGCAGGAAGTGACACTACACCTAGAAACCATCGCAGAAGAGGAAAAGCAGGCCATTCCAGAGTTCTTTGAGGGCCGTCCGTCAAAAACTCCAGAGAGATATCTAAAAATCCGCAACTACATTCTGGATCAGTGggAAAAGAGTAAACCCAAGTACTTGAATAAGACATCAGTGCGCCCTGGCTTGAAAAACTGCGGGGATGTGAACTGCATTGGCCGGATACACACTTACCTGGAGCTCATCGGAGCAATAAACTTCAACTGTGATCAGGCCATCTATAATCGTCCACGGCCGGTGGACCGCTCTCGTCTGAAGGAAAGCAGAGACAGTCTGGAGGCTTATCAGCTGGCTCAAAGATTGCAGTCCATGCGCACAAGGAAGCGCCGAGTACGGGACATGTGGGGAAACTGGTGTGATGCTAAAGACCTAGAGGGCCAGACATACGAGCATTTAAGCGCAGCAGATCTGTCCCTTAGAAGAGAGGAAATGAAGAAAAGGCAGCCAAGGCCCTGCAAATTCCCTAAACGCAGTTCTTTTGATCCATTCCAGCTCATTCCTTGCAAGACATTTGGAGAGGACACACAGGAGCCATTTCAAGTGATCGTGTGCGCTGAAGCCCTGGTTGTCATGGATGTGCACGCTCATGTCTCTATGGGAGAGGTGATCGGGCTGCTAGGCGGATCCTATGATGATGAAGAGAAAGTGCTGAAGatCTGCGCTGCCGAGCCATGTAATAGCCTCAGCACTGGActacagtgtgaaatggacCCTGTCTCCCAGACACAAGCTTCTGAGCTTCTCGGGGCCAAAGGTCACAATGTAGTCGGCTGGTATCACTCCCATCCCGCCTTTGATCCCAACCCCTCCCTTAGAGACATTGACACCCAGGCCAAATACCAGAGTTATTTCTCTCGAGGAGGTGCTCCTTTCATAGGAATGATTGTGAGCCCATATAACCCCAGTAACACCTCTCCTGTATCCCAGACCACCTGTCTGCTTGTGCAGGAAGAGACTGGGCCTACGGATACTCAAAAGCATCCATACAAGTTTGAGTACCTGGTCTCTGCAGAGATCCCTGACTGGACAGAGGTGATGAGAAGAGCAGAATGGGTGGTGTTCAAATACAGAGAGTCTCATGGGTGTGTTCCAATGGACAGGCTGTATCGCAGAGATTCCTCGATCACATGTCTAGAAAAGTTGCTTGTCTCACTAAAGAAGACCCTTACAGAGGTTCCAGAGACTGAGACCGAGACCTTCCTCATCCAGATTGAAACTTTGTTCATTACACATTTCATTGTTAAGCAAGAGACTCCTCAAGATATGGCTGGTTCTTCCTCTCATCCTCATGATCCAGTTACAAGATCTCCTTTACACATATTCACCATCTCTGAGCAAGATAACAGTGGTGCAGCTTTGGACTTTGatgaaatgtgttttacagATGAGCAGTCCACCACTAATTCCAGCAACTCTGATAAAATGTCCTCCAGTCCTGGTAACCAAATTATACCCCATCCAGAAGTCACTGTGCCCTCTATACAAACAGtaaatgaagaaaatgagaaatgactctTATCTTAGTTCTGATCTCTCAGAGAGTAATGTATTATATAAACAAGACCATTCCAATTTGTTTATGATGTGACCTAGTGTATCTGGATTTATAAAAACTTGGGTTTTCAGGCTGGGCAAATACGCCACACTAATTATAGACATTGGGCAGCACTCCTAACTCTACCTTCATCTATCTGTGTAACATAATTTTAATGTATCACTGTGGAAATGAGTGTCAGTCAAATGACATATTCAATATTTTAgctaaattaaaatgatttaatccTTTTAGGCAGAGATGCATGAAAGTTTTTGTAAGTAAATACAGTATCCATATTTTACCACTATATATGCAACTTATAAGACTCTTACAGGTTAACTGGTAAATGAAATTGCTATATGCTATAAACTGCTATATGGCTACATTAGGAACATCTTAACCCCTGATTTCCCATCACCACAATAGAAATGTCAGTAAGATGGACTCTTTCACATCATACTATGTTTATTGACTGTTTACATTGGCTTGTAACGTCCTcgtcaatatttattttttcttgttgaAAGTGTTAACTAGATAGGATAATGTTAATAAAGCCAGTgttgattatttttaataa

Function

GO:

id name namespace
GO:0006338 chromatin remodeling biological_process
GO:0035522 monoubiquitinated histone H2A deubiquitination biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0042393 histone binding molecular_function
GO:0004221 obsolete ubiquitin thiolesterase activity molecular_function
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function
GO:0008237 metallopeptidase activity molecular_function
GO:0003713 transcription coactivator activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43477 lncRNA upstream 12070 71261305 ~ 71291859 (+) True G32379
TU43245 lncRNA upstream 171888 71129690 ~ 71132041 (+) True G32219
TU43233 lncRNA upstream 198138 71103225 ~ 71105791 (+) True G32210
TU43180 lncRNA upstream 344172 70945974 ~ 70959757 (+) True G32174
TU43154 lncRNA upstream 436420 70856811 ~ 70867509 (+) True G32151
XR_002649768.1 lncRNA downstream 143430 71457906 ~ 71462877 (+) True LOC111191996
TU43666 lncRNA downstream 834799 72149275 ~ 72149476 (+) True G32535
TU43670 lncRNA downstream 836092 72150568 ~ 72150791 (+) True G32539
TU43688 lncRNA downstream 928009 72242485 ~ 72242811 (+) True G32556
TU43702 lncRNA downstream 1008185 72322661 ~ 72323006 (+) True G32570
XM_007239533.3 mRNA upstream 17903 71278318 ~ 71286026 (+) True scrn2
XM_007239526.3 mRNA upstream 47855 71191820 ~ 71256074 (+) True suco
XM_022665824.1 mRNA upstream 190021 71106631 ~ 71113908 (+) True LOC103046432
XM_007242524.3 mRNA upstream 190021 71106671 ~ 71113908 (+) False LOC103046432
XM_022665798.1 mRNA upstream 207400 71088840 ~ 71096529 (+) True LOC103039880
XM_007260655.3 mRNA downstream 1766 71316242 ~ 71339300 (+) True oma1
XM_007260656.3 mRNA downstream 1766 71316242 ~ 71339300 (+) False oma1
XM_022665936.1 mRNA downstream 148624 71463100 ~ 71980300 (+) True dab1
XM_022665917.1 mRNA downstream 148624 71463100 ~ 71980300 (+) False dab1
XM_022665953.1 mRNA downstream 148624 71463100 ~ 71980300 (+) False dab1
TU43257 other upstream 134373 71167524 ~ 71169556 (+) True G32229
TU43252 other upstream 162745 71137512 ~ 71141184 (+) True G32225
TU43208 other upstream 228043 71073848 ~ 71075886 (+) True G32198
TU43152 other upstream 436286 70856811 ~ 70867643 (+) False G32151
TU43083 other upstream 664190 70639083 ~ 70639739 (+) False G32105
TU43523 other downstream 649528 71964004 ~ 71980363 (+) False dab1
TU43802 other downstream 1281430 72595906 ~ 72596937 (+) True G32641
XR_002649475.1 other downstream 2124580 73439056 ~ 73506987 (+) True LOC103030552
TU44367 other downstream 2676029 73990505 ~ 73992259 (+) False selp

Expression Profile