RNA id: XM_022666098.1


Basic Information

Item Value
RNA id XM_022666098.1
length 1382
RNA type mRNA
GC content 0.49
exon number 10
gene id lexm
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 72571479 ~ 72579512 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CATAGTCACAACATTCTCAAATACACAGGGGGGTCCTGTCCTGTGTGATCTCTGCAGCCAGGACAACACATGAAAATGgcagaaaaaaagttcaaaggTGCCCCTTTTGGGTCCCAGTCACACAGATTTGATGTCTCAGGAGTACATCCAGCAAACAAGAGAGTGGGAACATACACTCAGATCTCCTGTTGCAAGAGGAGGACAAGTGACCTGGAGAGGAACCTCGGGCCTGGTACATATAATCCAGACTCTGGTGACTTCAGTGCCCGGGCAGTGCGGGAGCGGTCAATGGGTCCGGACTGGAAGAGAGCACAGGAGACGGCCCGTCTGGCACAAATTCCACACCTGCTGTACCGGGATGCGTGGGCAAACAAACAATTCCttAAAACCAAAGTTGGCCCAGGCACATACAAAATTCCTAGTTTTACTGAGGAGCTGAAAAAGAAACCTAGCAGCCTGAGAGGAATCTGTGAGACCAGAGAGGAACGCTTCAAAGACTGTCAGaaCACCAGCGTTGGCCCAGGTATTTACAAAATCACTAGTTTTATTGAAGATCTGGAAAAGAAACCTGGAAGTCCAAAAGGAATCTGTGAGACTCGGGAGCAGCGCTTCAAAGACTTCCAGagctgcaccCCAGGTCCAGGAGCTTATGGTAAAGGGGGAATCCCTTCAGCCTCACTGGAAGAGAAGGAAAGGAGAAACAGGGGAAATTCTATAGACTCCAGTGCCAGATTGAAACGCTTCCCTGAGAACATCGTGAAAAGGACAAATCTGGGTCCGGGTGAATACACTAAGTTTGGGGAGGAGCTCCAGAGACCTGAGAAGAAGAAACATGGGGTGTTCAGCAGTCTGGAGCAATACCCTTCTGTTCCTACAGAGAGAATCTACCTCTCCACACTGCCTCAGTGTCCACGGCCGATGacGTTTCCTGGGCCAGGCTGGTATGATGTTAGTCCTGTAACTCCAAGCAGGCAATCGAGGAGTGAAACACCAGCCCCTTTCCTCTCCTCTGCTTCTAGGTTCAGCAAGAGTATGGAGACGCTGCTGAATAAAAACCATAACATGGTTGGCCCTGGCCGCTATGAAATCGCAGACAAAAATTGGAATTCAACTGGTCACAGCTCAGCATTCATTTCTGATACCCAGCGCTACCCGAACTGCCCGGCAAGAGACAAGTACAACCAGGAGAGACTCAGACCCCAAAACGTGTCATTGGAAGGAAGGTCCAGCCTGGTGCCAACAGAGGGTCCCATCTAAGGAGGACAATTGTATTCCTAACTGTAGTTACATTCCACACACATTATGCATGGGTGCTTCCTACTGTAAATACACATTGCTGCCTAAATAAGTAATtgcaatacatttatttctactGCATAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43806 lncRNA downstream 7980 72559388 ~ 72563499 (-) True G32645
TU43763 lncRNA downstream 74428 72493608 ~ 72497051 (-) True G32616
TU43768 lncRNA downstream 88615 72479262 ~ 72482864 (-) True G32620
TU43752 lncRNA downstream 205742 72365530 ~ 72365737 (-) True G32606
TU43750 lncRNA downstream 208138 72362930 ~ 72363341 (-) True G32604
TU43825 lncRNA upstream 16390 72595902 ~ 72596898 (-) True G32658
TU43826 lncRNA upstream 17518 72597030 ~ 72597468 (-) True G32659
TU43827 lncRNA upstream 20693 72600205 ~ 72600426 (-) True G32660
TU43833 lncRNA upstream 29193 72608705 ~ 72610143 (-) True G32665
TU43839 lncRNA upstream 46814 72626326 ~ 72626578 (-) True G32668
XM_022666060.1 mRNA downstream 43879 72522665 ~ 72527600 (-) True bsnd
XM_015608682.2 mRNA downstream 44035 72522665 ~ 72527444 (-) False bsnd
XM_007260664.3 mRNA downstream 53184 72498722 ~ 72518295 (-) True pcsk9
XM_007260662.3 mRNA downstream 169064 72398791 ~ 72402415 (-) True bloc1s2
XM_007260659.3 mRNA downstream 539839 72013255 ~ 72031640 (-) True prkaa2
XM_007245319.3 mRNA upstream 33926 72613438 ~ 72619980 (-) True LOC103032851
XM_015604846.2 mRNA upstream 33926 72613438 ~ 72619602 (-) False LOC103032851
XM_007245382.3 mRNA upstream 224481 72803993 ~ 72813530 (-) False pla2g7
XM_007245383.3 mRNA upstream 224481 72803993 ~ 72813529 (-) True pla2g7
XM_015604834.2 mRNA upstream 224481 72803993 ~ 72813245 (-) False pla2g7
TU43757 other downstream 29032 72527783 ~ 72542447 (-) True G32611
TU43689 other downstream 329209 72241530 ~ 72242270 (-) True G32557
TU43617 other downstream 589426 71979060 ~ 71982053 (-) True G32492
TU43449 other downstream 1429141 71138486 ~ 71142338 (-) True G32364
trnat-ugu_81 other downstream 1474776 71096631 ~ 71096703 (-) True trnat-ugu_81
TU43886 other upstream 118161 72697673 ~ 72698010 (-) True G32714
TU44174 other upstream 808350 73387862 ~ 73388612 (-) True G32914
TU44213 other upstream 972903 73552415 ~ 73552883 (-) True G32946
XR_002649482.1 other upstream 1178458 73757970 ~ 73778866 (-) False ak9
TU44385 other upstream 1216951 73796463 ~ 73868538 (-) False LOC111191425

Expression Profile