RNA id: XM_022666138.1


Basic Information

Item Value
RNA id XM_022666138.1
length 3150
RNA type mRNA
GC content 0.53
exon number 3
gene id LOC111191362
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 72654819 ~ 72679083 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTGGAATGGATCTGTGAGTTGATTTACCAATAGTGCCAGGACTTGCTTGTTTTGAACCTGACAGTTCTATGGTTACTTCATTTTTATGTTAATCTTTTAATATTGCCCTTGAGAATATCTGGTTCTTTTCTGTGACAtcaactaaactaaactcaaaCTCCCCCAGAATCCCTCCTTCTCACATCCCAGGACAGACTTTCAGAGGCAGGGCTTGTTTCTCCATGCAGTCGACTGGAACAGTTCAAGGCTTAAAGGTCCTGGATGTGCTCTTGCTCTTTCAGGTATTTTAAGTAAACGATGCtcctgcttctgctttcagaaaATGAAAGGAGAAATAGGTAGTAGAGTTTTCACTTCAtcattaagtaaataaaatgatcaagcTGATCTAAAGTGTGTGCTCCCATTCCCTTGCCTTTCCCTCTGCTGCCTGCATGTAttatgatattcaaattttgaaTATCATAACTATAACACAATACTTGTAATTTTACTTTCAGGCAAACAGTGTTGAATACTTTAATACTTACATTTAAGGGTGGTGCTTCAGGAACACTTCtcctcaagtcacttttttgatagagcacctgtacttttactcaagtctgggtctctagtgCTTGATACATACCTGCATATTTCCTCCTGTAAATGAGCTGGTTAATTATATAATGCAATTATGACTAACCTGAAAGCCAGATTGAATAGTCTACAGTAGTATcatttaatacaataatacataaAGTACATGTCATTTCAAAAGGTTCTCCGTTCTTATGAGTTTGCTTTTGAAAGGTAGCATGTTAAGAGTTTCCTTCCCAAGAGCACAAGTCCATTCTTTGTGTTCGTATTGAGAAATACCCAACGCCTCATACCAGAAATACCCAGTCGCACTTCTCTGACTAAACACTGCAAGACTTTAAAACTTCAGCACGAGACCAAATAGTAAGAGATGAACTAAATGCGAGGGAATCTCATCGCGCGCCTTCTCCACAGTCTTGTGAATAAAACACACGCGAGCGCGCGCGGCCACTCAGTCGCTCTGCTAATCAATTTAGCGGCAGATGTGCGAGAATAATAGATGAATGTGATGTGTAATCCAACGCACCTGCTCCTTCACCGGAGCCCCCATTCGGCCTCAAACGGGCTCGCGCTGCAATGAAAGCGCTTTAATTAAAAGGCCACTGAGGCGGAGCCTCTCATCAGGTCCACGCTGCTATTTATAACGGCGAACAGCAGCGCGCGCTTCTGACTCCTGCCTGCTTCACCACGCTTCGTGCAGCGCGCGCCCATCGTACACATACATATATCCTAGCGTAAAATCGAGCTCGTCCCTTAGTACTATTTCATTAttcgtatttatttattaatatatttgatttGACAGGTGTTCCTCGGCTACTTTAGACAACACATGCAGCTGTCACTTCTGATGTGATAGCTTATTTAGAGGGGGGCGTGGCGACGTGTCTGAAACCGCGCTCTACTGTTGCGCATGCGCCGTCACGTCGCGAGAGGGGAGTCCCGGACCGTGTTTAACCCCTCTTTTGGGGGCCGAGCGCTATAATACCGCACGCGCCGCTGGAGGTCCTGCACACCCCCTCAGTACTTAAACTCCACAACACGAGCATCATCCCCCCCCTACACATACACTTTTATGTATATTAACATAGATATATACAACCTCGCAACAACCTGAGGAGGGGgaagctgctgttgctgcttcacgcgcacacacgcgcgcgcTTGACTGCTCTGGCTATTTGCGCGCCTCTGTCGCGCGGCGCACGGCACTCGCGGCGCGTGCGGCAGTCAGGTCAGTCCGCAAGCGGTGGACACCGAGCGTGGAAAAGGAGGAGTGGAGGCGGGGTAACGacagagtgggagagagagtttgtgtagGATAGAGAGACtgtgaatgtgtatgtgagggagagagagtaagagagagagagcgcgtgtGTGCGAGCGAGTGCGCGCGCGCGTGCGCTCGTTTCCTCTATGCCGTCGGCGCGAGCAGGGAGAGGAGTCGGCGCGCGGCGTTCGTGACGGCGAGAGAGGCGCGCGCGGCTGCGGGGCGGATGGATGGCCCCAGtatggaggaggagggggaggtggGGGCTCCGCTCCCTCGCGTCCACACGCGGCGGCGCAGGAGCCGCTGGCTGGCCCGCACGCCGCTCGCGCGCGTCCCCTGCGAGGACGAGTTCGAGTGCCGCGAGCTCGAGGGCCTCTTCCAGAAGTACAACCTGAAGCTGGAGCAGACCGCCACGCTCAAGGCGCTCGCCGTGCTCATTCTGGCCACGTCGGCGCTCGCGCTCGTCGAGCTGCTGTCGGTGGGCTCGCGCTTCACCGTGTCGGCGGGCTCGCACCCGGTGCACTGCGTCATCTTCGCCTCGCTCTTCATCGTGGCCAACGTCAAGTACCTGCAGGTGACGCAGCTGCAGCAGATCGCGCGCCTCGCGCTCCTCTTCAGCTTCACTTTCGCGCTCCTCTGCTGCCCCATCCCGCTGGCGCTTGCGCGCGCGCCCCGGACCCACGATACCGATGCTGCTTCCGCGGCGGGAGCGGCGTCGTCGGGGAGCTTTGGGTCTGCAGTGGCGGCAGCGGCAGCGACCCCCGAGCAGGGCGTCTGGCAGCTCATGCTCGTCACGTTCGTGGCGTACTCGCTGCTGCCCGTGCGCACGCTGCTGGCCGTGCTTTTCGGCGTGCTGGTGGCCGCGTCCCACTTCATCGTGACGGCCACGTCGGTGACGGCACACAGGCCGCGCGTCTGGACTCCGcTGGTGGCGAATGCAGTGCTGCTGGTTGGTGTGaacctgtctggtgtgtttgtgcggGTCCTCACTGAGCGTGCCCAGAGGAAGGCCTTTCTACAGGCCAGGAACTGCATCCAAGAGCGCCTGCAGCTGGAAGACGAAAATGAAAAACAgGAACGCCTCCTAATGAGTCTGCTGCCCAGAAATGTTGCCATGGAGATGAAGGAGGACTTTCTTAAGCCACCAGAAAGAATCTTCCACAAGATCTACATCCAACGGCATGACAACGtcaggtagagaaagagagagagagagagagagagagagagagagagagagagagagacaaagagagaggagaatctTTATAACATGTAAAACAGAATTGCAG

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0009190 cyclic nucleotide biosynthetic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004016 adenylate cyclase activity molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43805 lncRNA upstream 28134 72626396 ~ 72626685 (+) True G32644
TU43787 lncRNA upstream 59141 72565009 ~ 72595678 (+) False G32630
TU43786 lncRNA upstream 59141 72586500 ~ 72595678 (+) True G32630
TU43723 lncRNA upstream 157759 72492109 ~ 72497060 (+) False usp24
TU43715 lncRNA upstream 291478 72362951 ~ 72363341 (+) True G32579
TU43885 lncRNA downstream 18366 72697449 ~ 72697765 (+) True G32713
TU43888 lncRNA downstream 22439 72701522 ~ 72701806 (+) True G32716
TU43921 lncRNA downstream 102740 72781823 ~ 72786363 (+) False sf3b6
TU43953 lncRNA downstream 162768 72841851 ~ 72842494 (+) False G32769
TU43954 lncRNA downstream 162768 72841851 ~ 72842494 (+) False G32769
XM_007245314.3 mRNA upstream 18571 72627240 ~ 72636248 (+) False sirt5
XM_007245317.3 mRNA upstream 18571 72627475 ~ 72636248 (+) True sirt5
XM_007245320.3 mRNA upstream 44637 72604213 ~ 72610182 (+) True LOC103033168
XM_007245321.3 mRNA upstream 44637 72604219 ~ 72610182 (+) False LOC103033168
XM_022666125.1 mRNA upstream 44637 72604234 ~ 72610182 (+) False LOC103033168
XM_007245378.3 mRNA downstream 63935 72743018 ~ 72777057 (+) True LOC103023468
XM_007245380.3 mRNA downstream 102710 72781793 ~ 72786363 (+) True sf3b6
XM_022666164.1 mRNA downstream 107913 72786996 ~ 72801987 (+) False tdrd6
XM_007245379.2 mRNA downstream 107915 72786998 ~ 72803789 (+) True tdrd6
XM_022666157.1 mRNA downstream 107915 72786998 ~ 72803789 (+) False tdrd6
TU43802 other upstream 57882 72595906 ~ 72596937 (+) True G32641
TU43523 other upstream 674456 71964004 ~ 71980363 (+) False dab1
TU43257 other upstream 1485263 71167524 ~ 71169556 (+) True G32229
TU43252 other upstream 1513635 71137512 ~ 71141184 (+) True G32225
TU43208 other upstream 1578933 71073848 ~ 71075886 (+) True G32198
XR_002649475.1 other downstream 759973 73439056 ~ 73506987 (+) True LOC103030552
TU44367 other downstream 1311422 73990505 ~ 73992259 (+) False selp

Expression Profile