RNA id: XM_022666261.1


Basic Information

Item Value
RNA id XM_022666261.1
length 2510
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC103030552
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 73439056 ~ 73506987 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtgtgtgtgtggagctgtaGTGTTGGAGTGGGGggctctgtgtgtgagtgtgtttatgtgtgtgtgtgtgtcatggaCCCTCAGCTCGCCCCGACTCCACCACACCTCACCCGGCTCCCTCCTCAAGCCTGACCCcgacaaccacacacacacacacacgcgcgcgcgcgaGCCCGCGCCGTCTGACTCAGTCCTCTCTCGGGAGCTCCAGAGATCCCAGCGCGGACTTTCCcgctcagtcagtcagtcagtctccggcgctctctctctgtctctctccggCATGGCCAGCCCCCGGCAGCCCACCCGTCTGAAGGCTGAGTAGCCGCTCTGGAGGCGCGTCTGGAGGAGGATGCTGAGCGCTGCTCTGCGGCGATAACCGCTCTCTAACCCCGCAGCCGCTCTGCTGCCGCATTCTCTCCTCTTCTGGACACAATTAGTGGAGCGCGGTTCCGTCAATTATGTTCACTTTCGCTGCCTTCTGCTACATGCTGTCCCTCGTGCTCTGCGCTTCCCTCATCTTCTTCGCTATCTGGCATATAACAGCCTTTGATGAGCTCCAAGCGGATTTTAAAGTCCCAATTGATCAAGGCAATCCACTTCACGCACGTGAAAGACTTCGGAACATTGAGAGGATATGCTGCCTTCTCCGAAAGCTGGTGCTTCCAGAGTATTCCATCCACGGACTCTTCTGTATTATGTTCCTCTGCGCCCAAGAGTGGCTAACTGTGGGCCTGAACATCCCCCTCCTTTTCTACAATACATGGAGCAGGTACTTCCACAGCCCAACAGACACTAAGGAGCTGCTCTACGACCCTGCGTCCGTCATGAACGGGGACACCCTCAAGTTCTGCCAGAAAGAGGCCTGGTGCAAGATGTCCTTCTTCGTGCTTTCCTTCTTCTATTATCTCTACTGTATGATCTACTCTTTGGTAACCTCATAACAAAGTTTTTGGCACTAAAGAAAAGTTGATGGATATCAGAGACTGTTACCTGGAAATCGAAGCGCTAAACCAATCTCTGGAGGACTTTGTTCTTGGATCACCTGGAGAAAGATGTCTTCGTGGGTTTCTGAGGAGTATGGAAGAAGGATGTGTGTTGTTTACCAGTTCCAATACCTGAAAGCTACTCCTGACATTGTGGGTGGCTGGCCGTGGGGGCTCTTAACACAATACTGCTAGCACACTGGCATACTCACAATCGTTCGCGTGGTTGTATTTGCACAGATTGTCTCAGGCATAGCACATGTGCTTAAGGACATTAAGGCTCGACACCTGATCACCTTTACACTTCAATGTAGCTCCAAACTGTGGTGTTGGGTTAAAGGCACATTGAGTGAAACAAGGCCAACCTTATCAGCGAATGTTTCATTTCTTACTAGACACTCAGTACTAGACCTGTGGATTCATACAATCTAAATTCTATGTGAATGGCTTTTGTGatatgtgtttttgtgcatCCTGCAATAGGCGATTTTAATATGAACTTCATATGTTGCATTCTTTGTGTACATAGCAAGATTTCTGTAATGCTCTGATGTTTTTGGTGTTGTCAGTCGTTGAGACATTTttagacttaaaaaaaagatctaaaatGCTTACATTGAGATTTTATCTAGTAAACTAGAGAACGATTTTAAAAGTACCACACTTTTGCACAATAGTTGTTATGGGTTTGCACAATTTATTACAGTAGGTGGATGTGTTGACGAAataatctatatttatataccCAGAATACCAGTCAAGTCTTCCAATATACACTATTATATAACATGTCAAGCTttcttggtgaaaaaaaaaaattgggtattatatatttgttgtaACATCATGACAAGTGATATGAAatttacagtaataaaacaagGTGCAAGTTATTCATCGTAACAAGATCGGTATTAAAGGGTAAGAtgttctttcattctttcactCATTTTAATTTTGCATAACAATAgcaatacaaataaatgaatctAGTTAACTGTATCAGGATGGTAGtcacaaaataaacatgaacaaCTTAAACAAGTTCCAGCAAAAGCTGCCAAAAGTCTTCTCTGAAAATAGCCTTGCTGttagtttaattatttatttatttactcttcATTTTTAGCGATGTCACACCATGTTTTTTCGTCCCCGCACCCCCTCCCCTCGTGCATCCTCCTTATTCCAAGTACTGCCAAAGCCTTTGAACAAGAGGCCATGCCGTTTGATTGTTTTTGTCACATCGCAGACAAAGTGTAACCACATGATGCGGAAACGCCTGGTGTTTAATGAAAAGAGATCCGTTCAGACCGTTCACTGCGGACTTGGaggatgaaaagaaaaaaaaggacatgTATCACAGCCATTATGTAGCCTGCTGGCTTTTTAGTATGCCTTGTGTAGTTACACTTAAAGTATGATGACCAAACATTTTATATCCCTACTGTGTATGTGTCCATCCGATATTGGTTGAGATATTTgtatattatgtaaaataaatgctattttaaaatcagttaa

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44154 lncRNA upstream 90436 73348197 ~ 73348620 (+) True G32905
TU44129 lncRNA upstream 173657 73265000 ~ 73265399 (+) True G32886
TU44128 lncRNA upstream 174563 73262315 ~ 73264493 (+) True G32885
TU44108 lncRNA upstream 280065 73144652 ~ 73158991 (+) False cd2ap
TU44014 lncRNA upstream 376391 73061705 ~ 73062665 (+) True G32806
TU44206 lncRNA downstream 34745 73541732 ~ 73541987 (+) True G32939
TU44216 lncRNA downstream 64006 73570993 ~ 73571378 (+) True G32949
TU44218 lncRNA downstream 85090 73592077 ~ 73592311 (+) True G32951
TU44226 lncRNA downstream 113579 73620566 ~ 73620867 (+) True G32959
TU44228 lncRNA downstream 123300 73630287 ~ 73633629 (+) True G32960
XM_015604828.2 mRNA upstream 191871 73219526 ~ 73247185 (+) True opn5
XM_007245401.3 mRNA upstream 242836 73144650 ~ 73196220 (+) True cd2ap
XM_022666236.1 mRNA upstream 242836 73161688 ~ 73196220 (+) False cd2ap
XM_007245386.3 mRNA upstream 591242 72833413 ~ 72847814 (+) True LOC103025777
XM_007245384.3 mRNA upstream 607441 72823559 ~ 72831615 (+) True LOC103025272
XM_007245417.3 mRNA downstream 307983 73814970 ~ 73820823 (+) True LOC103034574
XM_022666412.1 mRNA downstream 372679 73879666 ~ 73884428 (+) True pdc
XM_007245422.2 mRNA downstream 400875 73907862 ~ 73931368 (+) True LOC103035930
XM_007245424.2 mRNA downstream 400875 73907862 ~ 73931368 (+) False LOC103035930
XM_015604832.2 mRNA downstream 400875 73907862 ~ 73931368 (+) False LOC103035930
TU43802 other upstream 842119 72595906 ~ 72596937 (+) True G32641
TU43523 other upstream 1458693 71964004 ~ 71980363 (+) False dab1
TU43257 other upstream 2269500 71167524 ~ 71169556 (+) True G32229
TU43252 other upstream 2297872 71137512 ~ 71141184 (+) True G32225
TU43208 other upstream 2363170 71073848 ~ 71075886 (+) True G32198
TU44367 other downstream 483518 73990505 ~ 73992259 (+) False selp

Expression Profile