RNA id: XM_022666464.1


Basic Information

Item Value
RNA id XM_022666464.1
length 1881
RNA type mRNA
GC content 0.48
exon number 12
gene id LOC103035214
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 73931397 ~ 73939674 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTCAGCTGTGAGCTGTTCTTCAAATCTGTGAGCATTTGGCATATTTGCGTAAACCTTTACCCAGTCCACTTTATTTGGACAGGACACTGCAGAGATGAACAgcgcttctctttttctcctgttaGCATGTGTGTTATTCACATTTTCTTCTGCCCAGAAAAGCTGCAGAGGCCAATGTGGAGAAGCTTATAACCGAGGTGATAAGTGTCACTGTGACTTTGAGTGTCTTTCACACAACGAGTGCTGCAAAAACTACGAGTCTGTTTGTACCACACGTGATTCGTGTAAAGGGCGATGCGGGGAGCGTTTTAAGAGAGGACGACAGTGCCACTGTGACattgaatgttttaaatttaaccAGTGCTGTCCTGACTATGAGACACAGTGCACACTTGAGGAAGAAGAAACCGATTATCCTGAGGTGACTACCGACAGCAATACACAAACCAGTCCTGCTGAAgAAGACTATGGCCCGGAGGAAGAAGGTAACAATGATCCTCCTGTACCTGAGAAAGACCCTGAAAGTTCTCAAGATACATCTGAATCTGAGCCACTTCCTTCCAACTCCCCAACTTCTACTCCATCTCCTGAGGTAACCACCATGCCAAACAGCGACCATTCAGACCTGCCACCAACCCCCACAAATACAGCACAGGCAGCTCAGCTGGCTACCACTACTGCGCTGCCTGACCAGAACACCCAGACAAACTCACCTGAGCTTAAACCATCTAACCCCGACCAACCTGAAGGAACGGTGGCTCCAGAGGACAACCCCGACCAACCTGAAGGAACAGTGGCTCCAGAGGACAACCCTGGACCACAGACAGAACAGCCAGCACAGCCAGAGCCCACTACAAGTGCAGCCTCTGCAGGAGTGGAGCCCAAGGACCTGGACCCAACAGAGATTCCCATCACTACAGAAACACCAAAGACTAAAGAAAGTACACGGGGTCCCCCAACAACACACGATTTGTCCATTACTCCTGATTCTGTGAAACAAGATCCTTCTCCCtcaaaagaagcagaaaagcCCACTAAACCTAAACCAGAGGCTAAAGATGTTCTTGATGAGGGCAACCCTCAGGATTACCAGTCAGATGCCAACAAAGACACAAACCTCTGCAGTGAACTTCCCGTCAATGGCTTGACCACGCTGAGAAATGGCACCATCGCGGTTTTCCGAGGTCACTACTTTTGGATGTTGGATTCCAGAAGGAGACCTGGTCCTGCTCAGAGTATCACAGACGTGTGGGGAATTCCCTCTCCTATTGATACGGTTTTCACACGCTGTAACTGCCAGGGAAAGACCTACTTTTTCAAGGGAAATAACTACTGGAGATTTGAGAATGATGTCATGGACCCTGGTTTTCCTAGACCAGTCAGTGAGGGCTTTGGATTGGGGGGTCAGATCACTGCAGCTTTGTCCATGCCTCAGTACCGGAGCAGGAAGGAGTCCGTGTTCTTCTTCAAAAGAGGTGGATTGGCTCAAAGATACAGCTATCGTGTCACACCGCAGTGCGGCCGCAATCTAGCTGTGTATACGACAAAGAAGAAAGTGAAGAGGCAAGCAGTTCCTGAACTGGGTCAAGAAATCGACATTAGGAAGAGCTTGAGAGGCTTTCCTTACACCGTGTCCTCTGCTATATCAGTTCGTTCTCCAGGAGGAGATGGATACAAATACTATGTCTTCTCAAAAAGCAAGTACTACAGTTTAAAGATGGAGGGAGACACACCAGTGATCCTAACCCCAAGGAGTGGACCAGGACAGCAAAAACCTGAAAAGAGCTGGTTCAGATGCCAAAAAACTCTCTAGGGTCTAGGCCATACTTCAATTAACCcttcaaaataataaattacagatAACACACAAATAGTAACACA

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44407 lncRNA downstream 46483 73882893 ~ 73884914 (-) True G33076
TU44391 lncRNA downstream 62859 73864127 ~ 73868538 (-) True LOC111191425
TU44430 lncRNA upstream 11433 73950912 ~ 73953542 (-) True G33091
TU44444 lncRNA upstream 52263 73991742 ~ 73992572 (-) True G33099
XM_015604817.2 mRNA downstream 118256 73784007 ~ 73813141 (-) False LOC103034242
XM_007245416.3 mRNA downstream 118256 73784007 ~ 73813141 (-) True LOC103034242
XM_007245413.3 mRNA downstream 152531 73756908 ~ 73778866 (-) False ak9
XM_007245414.3 mRNA downstream 152531 73756908 ~ 73778866 (-) True ak9
XM_007245412.3 mRNA downstream 175882 73749986 ~ 73755515 (-) False ppil6
XM_007245427.3 mRNA upstream 16332 73955811 ~ 73970935 (-) True c3h1orf112
XM_007245426.3 mRNA upstream 37712 73977191 ~ 73979734 (-) True LOC103037051
XM_007245496.3 mRNA upstream 86126 74025605 ~ 74043117 (-) True LOC103031184
XM_007245430.3 mRNA upstream 108460 74047939 ~ 74086439 (-) True LOC103038456
XM_007245431.3 mRNA upstream 108460 74047939 ~ 74086437 (-) False LOC103038456
TU44385 other downstream 62859 73796463 ~ 73868538 (-) False LOC111191425
XR_002649482.1 other downstream 152531 73757970 ~ 73778866 (-) False ak9
TU44213 other downstream 378514 73552415 ~ 73552883 (-) True G32946
TU44174 other downstream 542785 73387862 ~ 73388612 (-) True G32914
TU43886 other downstream 1233387 72697673 ~ 72698010 (-) True G32714

Expression Profile