RNA id: XM_022667313.1


Basic Information

Item Value
RNA id XM_022667313.1
length 1264
RNA type mRNA
GC content 0.55
exon number 3
gene id LOC111191700
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 38721677 ~ 38726048 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TATTGCAGCATTAGCACTGGTGCTGTGGGGGCGTGTTGACTCTGAGGAGCCAGTGATGGACGGAGTGCTCGCCTTCATCACCTTTCAGAAGGTGTATTACCCACTGctgtgcattctgggtattccAGCAAATCTCTTCACCTTCTACATGATACGTTTCCGCACCTGTGGCATGTCGGACTCGGCCCGGATCTACCTGAGCTGCCTGGCGCTGGTTGATACCTGTTACCTGGTGTGGGTCATCCTGCTGGACCTGTGTCTGACCTTCCTGCAAAGCCAGCCCTTCTGGCACTACCACCCGTGGTGCGGGATCATGAACATCCTGCAGTTTGGGACCTTCTACTGCTCTGCGTGGGTCGTCGTGGCCTTCACCATTGAGCGCTTCTTGGTTCTGAGGGCAACAGTGAGCTGTCAGCGCCCCCTGCATGCCAGGCACGCATTGCTCACTTGCACCACCATTATCCTGCTCTCACACCTGGCCTCTATACCAGCAGGCTGGATCAATGTGGTGGCACAGGTGAACCTGACTCTGAATGGTCAGGTGGTCAGCATGCCGCGGTGTATTTACCGTGAAGCTCTGTACTCCACCGTGGTCGTCTGGATCACATCATTTCTGTCCAGCGGCGTCCCCATCATGCTCGTCATCATCTTCAACTCCTTGATCGCGTATCACCTGCTGTGCTCCAGCCGGCTCTTCACCAAGGAGGAGCGCCGGACCATCCAGGGTTCCAAGACACGGGGGAGCATCCGCCGaaccctgctgctgctgggcaCTATCTCTGTGGCATTTGTGGTGCTGACCCTGCCACGCTTTGTCACCTACTGCATCCTGCGCACCATCTACAACCACAAAGACTTTGACCGTGATGACTACGAAATGCCCATCAACATAGTAAGCGACGTGGCGAACATGCTGCACAACCTGAACTCCAGCACCAACTTCCTGCTGTACTGCATGGTCAGCCGCCGCTTCCGGCAGGAGCTGCTCAACACTCTGACCTGCCGGGCCAAGGCCAGGGAGCTGGGCTCCTACTTCACACACACCACCATGAAGGTGTTTTCAGTGGCCGAACACAAATACACACGCGGCCGAGACCCCGTCTCAGTTGTGCTGACCAAACTCAGACGCTTTCACGATTTGACCCCCCACGACCCCCGTCCATCTTCGACCTCTGATTTCTCCAGCACATTTTAAAACGAAGGACACCAATCCGTTTTACTAGAAAAATCTAAGTTTGCAAAAAACTgacatttgaaaaaataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33037 lncRNA upstream 92701 38628768 ~ 38628976 (+) True G24546
TU33034 lncRNA upstream 101197 38620242 ~ 38620480 (+) True G24543
TU33033 lncRNA upstream 103811 38617486 ~ 38617866 (+) True G24542
TU33032 lncRNA upstream 104244 38617102 ~ 38617433 (+) True G24541
TU33024 lncRNA upstream 129150 38590941 ~ 38592527 (+) False G24535
TU33051 lncRNA downstream 79292 38805340 ~ 38809014 (+) False G24559
TU33055 lncRNA downstream 79292 38805340 ~ 38809014 (+) True G24559
TU33064 lncRNA downstream 91186 38817234 ~ 38821337 (+) True G24564
TU33076 lncRNA downstream 142686 38868734 ~ 38877657 (+) True G24575
TU33080 lncRNA downstream 157240 38883288 ~ 38884012 (+) True G24579
XM_007259901.2 mRNA upstream 4242 38667509 ~ 38717435 (+) True fyn
XM_007259902.2 mRNA upstream 4242 38667509 ~ 38717435 (+) False fyn
XM_022667246.1 mRNA upstream 4242 38667509 ~ 38717435 (+) False fyn
XM_007259906.3 mRNA upstream 59037 38645331 ~ 38662640 (+) True LOC103028301
XM_007259905.3 mRNA upstream 115037 38579963 ~ 38606640 (+) True tube1
XM_007259899.3 mRNA downstream 3264 38729312 ~ 38742584 (+) True traf3ip2
XM_022667294.1 mRNA downstream 3279 38729327 ~ 38742584 (+) False traf3ip2
XM_007259896.2 mRNA downstream 21429 38747477 ~ 38800101 (+) True rev3l
XM_007259888.3 mRNA downstream 202590 38928638 ~ 38933850 (+) True gjb7
XM_007259881.3 mRNA downstream 421484 39147532 ~ 39153428 (+) True LOC103047239
XR_002649597.1 other upstream 4242 38667509 ~ 38717435 (+) False fyn
TU33020 other upstream 135399 38585439 ~ 38586278 (+) True G24534
TU32915 other upstream 339367 38359335 ~ 38382310 (+) True G24463
TU32857 other upstream 484636 38232593 ~ 38237041 (+) False G24431
TU32794 other upstream 623353 38092974 ~ 38098324 (+) True G24390
TU33100 other downstream 199648 38925696 ~ 38926982 (+) True G24594
TU33085 other downstream 213309 38939357 ~ 38947222 (+) False G24583
TU33086 other downstream 213309 38939357 ~ 38947222 (+) True G24583
TU33254 other downstream 319122 39045170 ~ 39045781 (+) True G24719
XR_002652014.1 other downstream 599035 39325083 ~ 39340971 (+) True LOC111196173

Expression Profile