RNA id: XM_022667875.1


Basic Information

Item Value
RNA id XM_022667875.1
length 1415
RNA type mRNA
GC content 0.39
exon number 1
gene id LOC103035296
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 39699292 ~ 39700706 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaGACTAATATGAACATGCATGCTCTGGATTAATGATATTATATGTTAAAGTGAATTTGTGTTTGATAAATGTGTGACCAttcaactttttatttatgtgttttagaATAGGAaggcagtgtgtgtgctgtacaTGGACACCATAATCAACTTTAACCAAAGCGGAACCTTGGAGAAACCTCCACTTTGTTTCGATTCTCTTAATGGCTCTTGTCTGAAAGTGAATTATCCTCTTGAAATTCGTGTTGTGCTCTATATCTTCTTTAGTGCATCATCTCTTCTAACAGTGATCGGAAACCTGCTGGTGATCATAACAGTTATTCACTTCAAGCAGCTGCACACACCAACTAACTACCTCATTGTCTCTCTGGCTGTAGCTGATCTGCTTGTAGGAGGGGTGGTGATGCCTCCCAGCATGCTACGCTCTGTGGAGACTTGCTGGTACTTGGGAAGCATATTCTGTAAAATACACAGCAGTCTTGATGTCACGGTTTGCACTGCGTCTATTCTTAACCTGTGTATAATTTCTTTAGATCGATATTACGCTGTGTGTCACCCTCTTCTCTACCACAGTAAAATGACTCCCAATACCACTGTGTTTATGATCTTCGTTTGCTGGACCATATCTGTATTAGTGGGATTTGGGATGATATTTCTGGAGCTCAATATTCTGGGCAATGAGGACTTTTACTACAACAACTTTGTTTGTGAGGGTTCCTGTACAGTGTTTCAAGCCAAGGTGGGAGCTCTTGTGTTTTCAATGCTTTGCTTTTACATTCCAGCCCTAGTGATGCTCAGTGTGTACGTGAAAATACTGCACACTGCACGAAGACAAGCACGAGCAATCCACAGTACCAACACTcatattaaaaacacagcagaggAAAAAGCCAACATAAACAAGTCGGAAAGAAAGGCCACCAAAACGTTAGCCattatcatgggtgtgtttctATCATTCTGGGTCCCATTTTTCCTTTGTAATTGCATAGATCCGTTCACCGGATACTCAGTGCCACCACTTCTGTTCGACCTGTTCTTATGGGTGGGGTATTTCAATTCAACATGTAATCCTATAGTGTATGCCTTTTTCTACAGCTGGTTCAGACATGCTTTTAAAGTCATTCTCTCTGGCGGAATATTCCAGACCAATTCATCACGGACCAAactgttttaaagttaaactCACTTCTGTATCCCTGTGACTGTCCATGTACTGTAACCATACTAAAAAAAGCACCTGTAATAATACCTATATTTAGCCATATATCTTATATTATGTGGACAATCTAAGCTGGTTTGCAATTTCAGACAATCCTGATTAGACAATCAGGATTTCAGTAAGATGATTAAGACTTTTTTTGTGAATCATGCTTACATTAAATGAAATCTGAATAAATTCCCTTAGCTTTAAA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0001594 trace-amine receptor activity molecular_function

KEGG:

id description
K05051 TAAR; trace amine associated receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002652030.1 lncRNA downstream 175018 39514469 ~ 39524274 (-) True LOC111196215
TU33518 lncRNA downstream 199826 39499043 ~ 39499466 (-) True G24911
XR_002652028.1 lncRNA downstream 218948 39472824 ~ 39480344 (-) True LOC111196213
XR_002649667.1 lncRNA downstream 490027 39207714 ~ 39209265 (-) False LOC111191798
TU33461 lncRNA downstream 490179 39207480 ~ 39209113 (-) True LOC111191798
TU33580 lncRNA upstream 23749 39724455 ~ 39732479 (-) True G24964
TU33623 lncRNA upstream 118570 39819276 ~ 39825981 (-) True G24992
TU33636 lncRNA upstream 144667 39845373 ~ 39848209 (-) True G24997
TU33637 lncRNA upstream 144667 39845373 ~ 39848209 (-) False G24997
TU33712 lncRNA upstream 474846 40175552 ~ 40230788 (-) False LOC111196341
XM_007259847.3 mRNA downstream 6110 39691978 ~ 39693182 (-) True LOC103036931
XM_015608503.2 mRNA downstream 32213 39665304 ~ 39667079 (-) True LOC103032818
XM_007259849.3 mRNA downstream 36976 39659836 ~ 39662316 (-) True LOC103037563
XM_015608500.2 mRNA downstream 41846 39656134 ~ 39657446 (-) True LOC103037243
XM_007259850.3 mRNA downstream 46231 39640238 ~ 39653061 (-) True stx7
XM_015608494.2 mRNA upstream 3422 39704128 ~ 39705844 (-) True LOC103035599
XM_022678251.1 mRNA upstream 17983 39718689 ~ 39720722 (-) True LOC111194344
XM_022667889.1 mRNA upstream 26808 39727514 ~ 39728585 (-) True LOC111191820
XM_022667892.1 mRNA upstream 33141 39733847 ~ 39734968 (-) True LOC111191823
XM_007259844.3 mRNA upstream 49316 39750022 ~ 39751990 (-) True LOC103035909
TU33508 other downstream 241103 39455236 ~ 39458189 (-) True G24903
TU33468 other downstream 352423 39273635 ~ 39346869 (-) False LOC103043888
TU33946 other upstream 1513715 41214421 ~ 41218829 (-) True G25265
XR_002652122.1 other upstream 1737050 41437756 ~ 41442494 (-) False arhgap11a
XR_002652156.1 other upstream 2156332 41857038 ~ 41865844 (-) False LOC111196508
XR_002652157.1 other upstream 2156333 41857039 ~ 41865844 (-) False LOC111196508
XR_002652158.1 other upstream 2156343 41857049 ~ 41865844 (-) False LOC111196508

Expression Profile