RNA id: XM_022668053.1


Basic Information

Item Value
RNA id XM_022668053.1
length 1754
RNA type mRNA
GC content 0.49
exon number 4
gene id LOC111191907
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 44673130 ~ 44693172 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTGCTCTGCTGAACATCCGCATTCAAGGAGGACCGGATTACAGATTCTGCAGAGGTGGGGAAACGAATTACTCCACAGGATGTCATGATGACAGCGACGAGACGATGCAAATTAGGAGAGTGCTGCAAAGGAGATAGAGCCGCAGCTGGAATTTTCAGAAAAATGTTGCCAGCTCACTCTGATTGATGAGCAGAAATGGATGAGCAGTACATTTCTAAATTAACCCCTGCTGTTGACTATGGAGCTGGTATCTTCCTGCTGGTGGTAGCCATTCTTTCCATCCTGGGGAACGCTGCCGTCCTGATCACGTCTGCTCGACGACACAGACTTTTAAAAGCCCCGGAGCTGCTCACTGTCAATCTGGCCGTGACTGATATCGGCATGGCACTGAGCATGTATCCACTCTCCATCGCCTCAGCCTTCAACCATGCCTGGATCGGAGGTGATTCCTCCTGCCTGTACTACGGGCTGATGGGAATGATCTTCAGCGTGGCCAGTATTGTGACACTGGCTGTCATGGCCATGGTGAGATACCTGGTGACAGGAAACACTCGCAAATCAGgaaACAAGTTCCAAAAGCAGACGATAAGCATCTTCATCGCACTTATCTGGCTGTATTCACTGCTGTGGGCAGTGTTTCCCCTGCTGGGTTGGGGGGGATATGGACCAGAACCATTTGGCTTGGCCTGCTCTGTGGACTGGGCTGGCTACCAGCACTCACTGAATGGATCTACATTCATTATGGCTCTGGCAATATTGTGCACCATCATCCCATGCGGCGTCATCTTATTCTCCTATTCTGGCATTGCTTGGAAGCTCCACAAGGTCTACCAGACCATCCAGAGCCACGACATGCTGCCCAACTCAGGTTATGTGGAGAGGAAAGTCACACTGATGGCCATTCTTATCAGCTCCGGCTTCATCGTCTCCTGGACTCCCTATGTGGCTATCAGCCTCTGGACCATGTTTCACTCTGAGGGGAAGGACAGCGTAGCACCTGTCGTCAGCATGCTGCCCTGCCTGTTTGCCAAGTGCTCCACAGCCTACAACCCCTTCGTCTACTACATCTTCCGCAAGTCTTTCCGTCAGGAGCTGAAGCGGCTGCGGAGCTACTGCTGGTGCCACCACCCAGAGGATGAGTTACCCGCTGCAGAGGAAGACCACAACCAGTGGAAGATCTCAGTGATCCTGAAAAGTCCTGGAGAACAAAGACATCAATGCATTACTTCGGGGGGCTGCTAGACCACTCTAAAAACAAGCATTCATGATGACAAGGTGACTAGTTTAAGCTAGCGACAGACATGTCTCCACAGACTGCAGCCTGATGAGCAGTGTTGATTGACTCTGCACTATTGGTGTGTGGTTTATTGGCATGTATTGTTTGAAAGAACAAATGGTCTGTGAAAGGGCTGCTTACTGACCTGAAACTGTGTATAAGCAGCAGGCACTTAGAACTCCTAATGAAGCCTTGTTTACACATCAGAGCTGTGCAGAAACATCTGGGTAGCACTGAATCGTGTTCTGattatataaaccaaaaatagaTGGTGAAATAGAATCAAATgctgtaccgtatttttcgcactataagggacaccagattataaggtgcactatcaataaacgtctattttctggtcttttttcattaataagGCGCACCGCATTATGTGAAACTAGTTAGGAACAGGGGTgatgccatgtttcccttttaattcagcaggtcttgcaaCTGGGTGGctagacctgtaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35148 lncRNA upstream 295603 44377325 ~ 44377527 (+) True G26124
TU35145 lncRNA upstream 305199 44364592 ~ 44367931 (+) True G26121
TU35127 lncRNA upstream 349308 44319986 ~ 44323822 (+) True G26107
TU35086 lncRNA upstream 400626 44272294 ~ 44272504 (+) True G26088
TU35027 lncRNA upstream 412114 44256473 ~ 44261016 (+) True G26043
TU35266 lncRNA downstream 42662 44735834 ~ 44736653 (+) True G26216
TU35267 lncRNA downstream 43995 44737167 ~ 44738115 (+) True G26217
TU35278 lncRNA downstream 74985 44768157 ~ 44768487 (+) True G26225
TU35279 lncRNA downstream 76090 44769262 ~ 44770002 (+) True G26226
TU35289 lncRNA downstream 106812 44799984 ~ 44800646 (+) True G26235
XM_007256614.3 mRNA upstream 193226 44474148 ~ 44479904 (+) True LOC103046392
XM_007256619.3 mRNA upstream 201199 44460685 ~ 44471931 (+) True vipas39
XM_022686599.1 mRNA upstream 212871 44417438 ~ 44460259 (+) True cdc42bpb
XM_007245350.3 mRNA upstream 313727 44357276 ~ 44359403 (+) True LOC103042260
XM_007245348.3 mRNA upstream 325474 44339246 ~ 44347656 (+) True LOC103041645
XM_022686638.1 mRNA downstream 17201 44710373 ~ 44727205 (+) True LOC111197225
XM_007229711.3 mRNA downstream 110387 44803559 ~ 44808849 (+) True wdcp
XM_022686640.1 mRNA downstream 110405 44803577 ~ 44808849 (+) False wdcp
XM_022686646.1 mRNA downstream 179292 44872464 ~ 44960236 (+) False atad2b
XM_022686643.1 mRNA downstream 179293 44872465 ~ 44960236 (+) True atad2b
TU34777 other upstream 1178815 43490786 ~ 43494315 (+) False LOC103033920
TU34767 other upstream 1248224 43424392 ~ 43424906 (+) True G25880
TU34766 other upstream 1251084 43421771 ~ 43422046 (+) True G25879
TU34713 other upstream 1309686 43360469 ~ 43363444 (+) True rps29
XR_002652205.1 other upstream 2156573 42497777 ~ 42516557 (+) True fgfr1op
TU35893 other downstream 1835223 46528395 ~ 46530387 (+) False fau
TU36151 other downstream 3585095 48278267 ~ 48282874 (+) True G26915
TU36153 other downstream 3587593 48280765 ~ 48282874 (+) False G26915
TU36264 other downstream 3862625 48555797 ~ 48558740 (+) True G26995
TU36265 other downstream 3862625 48555797 ~ 48641905 (+) False G26995

Expression Profile