RNA id: XM_022668194.1


Basic Information

Item Value
RNA id XM_022668194.1
length 1072
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC111191956
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 72206947 ~ 72208136 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAGTttttgcctcgttattccacgcgcAAGCATCAGTGCTCCGGCGCATCCGCGacagtttttttcccagcatttaattttttactcagtaacggggagttttccaatgtatcgaagtaaattacttgtgtcaaagtCTACTTGAGTAAaggtaaaatgacctattttaaaaactacaaattaCTCGTAAAGTCTAATCAATTACAGTAAGGTGAATAAATGTAATTCGTTACGTTCCACCCCGGAGCAGAAGGAGTCATGGCGAAAGACCAGTACACCAGAGACCTGGAGAAGCTGATCATGGAGCAGAGAGACACAACGTCCAGAGTGCTCAAACAGTGGACAATCGAGAAGGCTGAATGGGACGCGGAGAAAAAGAAGATGAAGCTGGAAATCGAAGAGCTGAAGAAGGAAGGAGAGAGGCTCACCctgagaaagaagaaagaggaagagcagatgcactctaaaaatgtgggagATGTGAAGGATCTCCTAGAAATGAAACAGGTGCAACAAGCAATGGAACGCCTTCAGAAGtcagagaaggaaaaaagagatCGAATCCTGCAGGCCTGGACTGTGGCAAGTAAGGAAtgggaggaggagaaaaagaagatGAAGCTGGAAATGGAACAGCTGaagaagaaagacaaagagcaGACGGGAGATGTGAAGGATCTCCTAAAAATGACAGTAGTGCAGAAAGCAGTGGATCTCATTCAGAAGTCAGAGACTCAAAGAATTGATAGGATCCTGCTGGCCTGGACTAAAGCAAGTGATGAAtggaaggagaaagaaaagaagatgaaGCTGGAAATTGAACAGCTGATGGAAGAAGGAGAGAAGCTGAAAGCGATGAAGCAGAAAGACGAAGAGCAGACGGTAGAGGTGAAGAAGGATCTCCTAGAAATGAGAGTGGTCCAGAAAGCAGTGGATCTGATTCAGAAGTCTGAGactgaaaaaagagacagaatcCTGCAGGCCTGGACTGAAGCAAGTGATGAATGGAAGGAAAAGATGGAGATGGTgatgaaataaagagagaaggagaagaaggagatgGAAAAGAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43670 lncRNA upstream 56156 72150568 ~ 72150791 (+) True G32539
TU43666 lncRNA upstream 57471 72149275 ~ 72149476 (+) True G32535
XR_002649768.1 lncRNA upstream 744070 71457906 ~ 71462877 (+) True LOC111191996
TU43477 lncRNA upstream 915088 71261305 ~ 71291859 (+) True G32379
TU43245 lncRNA upstream 1074906 71129690 ~ 71132041 (+) True G32219
TU43688 lncRNA downstream 34349 72242485 ~ 72242811 (+) True G32556
TU43702 lncRNA downstream 114525 72322661 ~ 72323006 (+) True G32570
TU43715 lncRNA downstream 154815 72362951 ~ 72363341 (+) True G32579
TU43723 lncRNA downstream 283973 72492109 ~ 72497060 (+) False usp24
TU43787 lncRNA downstream 356873 72565009 ~ 72595678 (+) False G32630
XM_007260660.3 mRNA upstream 122702 72036209 ~ 72084245 (+) True plpp3
XM_007260661.3 mRNA upstream 124385 72036206 ~ 72082562 (+) False plpp3
XM_022678518.1 mRNA upstream 209306 71988157 ~ 71997641 (+) True LOC107197929
XM_022665968.1 mRNA upstream 226647 71463101 ~ 71980300 (+) False dab1
XM_022666012.1 mRNA downstream 195398 72403534 ~ 72497064 (+) True usp24
XM_022666020.1 mRNA downstream 195398 72403534 ~ 72497064 (+) False usp24
XM_022666024.1 mRNA downstream 195399 72403535 ~ 72497064 (+) False usp24
XM_022666030.1 mRNA downstream 229048 72437184 ~ 72497064 (+) False usp24
XM_007260666.3 mRNA downstream 351221 72559357 ~ 72567455 (+) True dhcr24
TU43523 other upstream 226584 71964004 ~ 71980363 (+) False dab1
TU43257 other upstream 1037391 71167524 ~ 71169556 (+) True G32229
TU43252 other upstream 1065763 71137512 ~ 71141184 (+) True G32225
TU43208 other upstream 1131061 71073848 ~ 71075886 (+) True G32198
TU43152 other upstream 1339304 70856811 ~ 70867643 (+) False G32151
TU43802 other downstream 387770 72595906 ~ 72596937 (+) True G32641
XR_002649475.1 other downstream 1230920 73439056 ~ 73506987 (+) True LOC103030552
TU44367 other downstream 1782369 73990505 ~ 73992259 (+) False selp

Expression Profile