RNA id: XM_022678251.1


Basic Information

Item Value
RNA id XM_022678251.1
length 2034
RNA type mRNA
GC content 0.47
exon number 1
gene id LOC111194344
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 39718689 ~ 39720722 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGGGCTGTAGCAGGGCAGATGACAGTAAGGTTTTGAAGACATTTGTTCTGACGGACTTGGAAGTTTGTGGTGTGGAGGAGGATACATACATAGACCTGCCCAGAGTATTCACCCATAGCTTCATTCCAGTGCAAAAGGAGAATATTCCTAAGCCAGAAGACATTGCAAGGTGGCCTTATCTGAAAGATGTGTCTCTACCTCAGATCAATGCTGAAGTGGGACTTCCAGGTTTCCATGAAGACTATAAGATGTTCATGAAGGATGTCATTAAGAATGGATATGCAGTCAAGGTTCCCAGTGAGCAACTACTGCATGATGATGGCAGGGTGTGGTACATTCCCCACCACGGAGTGTATCACcccaagaaaaagaaaattcgGATTGTCTTCGATTGCACTGCAACCTACAGAGGAGTCTCTCTAAACGAGCAGTTGCTGCAGGGCCCAAACCTTACCAATACTCTTGTTGGTGTTCTAACGAGATTCAGGCAAGAGCCTGTGGCATTAATGGCAGATGTCAAAGCCATGTTCTATCAGGTTAAAGTTTCTGAAGAAGATGCAGATCTTCTACGTTTCCTGTGGTGGCCAGATGGCAACCTGGATGAAGAGATGGAAGAATTCAGAATGACTGTTCACCTTTTCGGTGCGACATCTTCACCCAGTTGTGCATCTTATGCCTTAAGGAAAACAGCAGAGGACAACAAGAAAACAGCAAGCCCAGAAGCAGCTGACACAGTTCTTCACAACTGTTATGTAGATGACTTCTTGAAGTCAGTTCCTTCTGAAGCTCAGGCAGTTCAACTTGTGAAAGACGTAAGAGCACTGTGCGCCATGGGTGGCTTTCAGCTGACTAAGTGGGTCAGTTCCAGTAAGGCTGTTCTGTTGACCATCCCTGAAGAAGATCGTGCAACTGATGTCAAAGACTTGGACCTGAGCCACAGCATCCCTCCCATGGAGCGTGCCCTGGGTGTCCAGTGGCGCACAGACTCAGACAGTTTCCAATTCCAACTGAATGTTCCTGAAAGGCCAAAAACAAGGCGGGGGATTCTGTCTGTAGTTAGTGCATTGTATGACCCCCTAGGACTATTGGCGCCAGTTATTCTGCCCGCAAAGCAGATCCTGAGGACTCTTTGTGAACAAAAGTGTGGCTGGGATCAAGAAATCAAAGACTCTCAGGCAGTCAGATGGCAAGAATGGTTGGCAGAAATGAAACTGCTAGAGGGATTCTCAGTAAGCAGGTGTGTGAAGCCAATGGCATTTGGACCTTTGCAGTCAGCACAACTACATCACTTTGCTGATGCATCAGAGACCGGCTATGGCACTGCCTCCTACCTGCTCCTGTCAAACCAAGCTGGTGAGAAATGTTGCACTCTCTTAATTGGAAAAGCCAGAGTAGCCCCTTTGAAACTTGTAACAATCCCACAGCTAGAATTAACAGCTGCGGTGGTGGCTGTGAAAATGGACCAGATGTTGCAACGTGAACTACAGGTGCCACTCCAAGATTCCATCTTTTGGACTGACAGCACTACAGTTCTGAGATACATTGGAAACAAGCATAGTCGCTTCAAGACTTTCGTCGCAAACAGAGTCGCAGTCATAAGGGAACATAGCCAGCTTTCCCAATGGCATTATGTGAAGTCAGGAGAAAATCCAGCGGACCAAGCCTCAAGGGGGATGAAAGTGAAGGAGTTTCTAGAAAACAAGACTTGGTTGCAAGGCCCAAGTTTCCTTCTAAAGTCTCAGGAAGATTGGCCGGAATTGCCTTATGTGAATGACATACCCCAAGATGACCCTGAGGTCAAGTCCTGTGCAATAAAGGTTGAAGAGGATGGGCAGAAGAAGGTGTTGGCTCTGGATAAGCTGATCGTGTACTACTCTGATTCTGCTACATTTGAGAGAGGTCTTTATGGACAAAATCACATTGTCAGAGAGCTGTCCAAACCAAAAAGAGCTGCTGACAACAGCACACATGAAAAAGTGTCGCCTGATGCTGAAACCAACTTTGCTCACCATAAAGGACTTGGAAGAGGCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002652030.1 lncRNA downstream 194415 39514469 ~ 39524274 (-) True LOC111196215
TU33518 lncRNA downstream 219223 39499043 ~ 39499466 (-) True G24911
XR_002652028.1 lncRNA downstream 238345 39472824 ~ 39480344 (-) True LOC111196213
XR_002649667.1 lncRNA downstream 509424 39207714 ~ 39209265 (-) False LOC111191798
TU33461 lncRNA downstream 509576 39207480 ~ 39209113 (-) True LOC111191798
TU33580 lncRNA upstream 3733 39724455 ~ 39732479 (-) True G24964
TU33623 lncRNA upstream 98554 39819276 ~ 39825981 (-) True G24992
TU33636 lncRNA upstream 124651 39845373 ~ 39848209 (-) True G24997
TU33637 lncRNA upstream 124651 39845373 ~ 39848209 (-) False G24997
TU33712 lncRNA upstream 454830 40175552 ~ 40230788 (-) False LOC111196341
XM_015608494.2 mRNA downstream 12845 39704128 ~ 39705844 (-) True LOC103035599
XM_022667875.1 mRNA downstream 17983 39699292 ~ 39700706 (-) True LOC103035296
XM_007259847.3 mRNA downstream 25507 39691978 ~ 39693182 (-) True LOC103036931
XM_015608503.2 mRNA downstream 51610 39665304 ~ 39667079 (-) True LOC103032818
XM_007259849.3 mRNA downstream 56373 39659836 ~ 39662316 (-) True LOC103037563
XM_022667889.1 mRNA upstream 6792 39727514 ~ 39728585 (-) True LOC111191820
XM_022667892.1 mRNA upstream 13125 39733847 ~ 39734968 (-) True LOC111191823
XM_007259844.3 mRNA upstream 29300 39750022 ~ 39751990 (-) True LOC103035909
XM_022685486.1 mRNA upstream 34755 39755477 ~ 39756680 (-) True LOC103031565
XM_007259914.2 mRNA upstream 44733 39765455 ~ 39766663 (-) True LOC103031261
TU33508 other downstream 260500 39455236 ~ 39458189 (-) True G24903
TU33468 other downstream 371820 39273635 ~ 39346869 (-) False LOC103043888
TU33946 other upstream 1493699 41214421 ~ 41218829 (-) True G25265
XR_002652122.1 other upstream 1717034 41437756 ~ 41442494 (-) False arhgap11a
XR_002652156.1 other upstream 2136316 41857038 ~ 41865844 (-) False LOC111196508
XR_002652157.1 other upstream 2136317 41857039 ~ 41865844 (-) False LOC111196508
XR_002652158.1 other upstream 2136327 41857049 ~ 41865844 (-) False LOC111196508

Expression Profile