RNA id: XM_022678409.1


Basic Information

Item Value
RNA id XM_022678409.1
length 990
RNA type mRNA
GC content 0.55
exon number 2
gene id LOC111194377
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 59239996 ~ 59243400 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAGTTGGCCGAGGAGCTGTTTCCCACACCACCACACCTGTCAAGCTCAACGTCAGCGCTCTGCACTCAGAAGAGATCAGGATATCAACCACCCATCATGCCCTGGTCAGCCGAACCCTCTAATATTCCTGCGGTAGACGATTGGATGCGTCGGAGCGAGGAAGTGTGGGAGGAGACTCACAGACGCATTGAGGCTGTTTTACAACGGCAGAAACAACAGGCTGATCGCCTACGCCGTGAGACCCCCCTTTACTCTCCTGGTGATCGGGTTTGGCTATCTACCAGGGATTTCCGGCAACCAGATGCTAATAAGAAACTTTCAGTTAAGTATATTGGTCCTTTCAAAgtcattaagagaattaatgaaGTTACCTACCGTCTTGATCTACCCTCTCACTACCGTGTATGCCCTTCTTTTCATGTGTCTTTATTAAAGCCGGTTATCCCTGGTCCGTTGGATGAGACATCGCTTGGGgcgtctcctcctcctccggtgGCTATGGACGGTGGCCCGGTTTATGCGGTAGAACGACATTTGGACTCCAGGAGGAGAAGGGGAGCCCTGGAGTATCTGGTGGACTGGAAGGGCTACGGACCTGAGGAGAGAAGTTGGGTTCCGGCAACTGATGTCCTGGATCCTTTAATGGTGGATGACTTTCACCGGTCTCATCCATCCCGTCCTGCACCACGCCCCAGAGGTCGCCCTAGGAGAAGGTCTCCAGGTCCAAGAAGGGGTAGACGCGGTGGTTCTGTCTCTGTCCGGTCCCTCAGTTCGGTCCGCAGTCCCAGGAGGGGTCGTCCCAGGTCCAGGGCTTCCATCCATTCCGTTCCCGTTTCTGGGCCACCTGTTCAGGACTCCGCTGAGGTTGGGGGGCTGTCTCCTTGTGTCGTCCTCATCCTTCGGATTATTCGGACTCTTTGGAGGGGGGTACTGTCACGCGGCCGTGTTCTCCTTCCACGCTACCTGACTCCATTTCCCAAGATCCCATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39408 lncRNA upstream 20167 59219576 ~ 59219829 (+) True G29383
TU39324 lncRNA upstream 127697 59064473 ~ 59112299 (+) False mtmr9
TU39325 lncRNA upstream 127697 59064473 ~ 59112299 (+) False mtmr9
TU39310 lncRNA upstream 260299 58976662 ~ 58979697 (+) True G29304
TU39299 lncRNA upstream 291416 58935011 ~ 58948580 (+) True G29299
TU39448 lncRNA downstream 33207 59276607 ~ 59276837 (+) True G29405
TU39454 lncRNA downstream 69202 59312602 ~ 59312912 (+) True G29409
TU39479 lncRNA downstream 192760 59436160 ~ 59436375 (+) True G29432
TU39501 lncRNA downstream 263608 59507008 ~ 59519972 (+) True G29448
TU39591 lncRNA downstream 388304 59631704 ~ 59631907 (+) True G29515
XM_022678406.1 mRNA upstream 9608 59228844 ~ 59230388 (+) True LOC111194376
XM_022678400.1 mRNA upstream 11156 59221266 ~ 59228840 (+) True LOC111194375
XM_007256634.3 mRNA upstream 55963 59180645 ~ 59184033 (+) True sox7
XM_007256633.3 mRNA upstream 71498 59139580 ~ 59168498 (+) True pinx1
XM_007256631.3 mRNA upstream 116419 59115439 ~ 59123577 (+) True LOC103024478
XM_022663760.1 mRNA downstream 8573 59251973 ~ 59275534 (+) False LOC103025639
XM_022663751.1 mRNA downstream 19668 59263068 ~ 59275534 (+) True LOC103025639
XM_007256637.3 mRNA downstream 19668 59263068 ~ 59275534 (+) False LOC103025639
XM_007256635.3 mRNA downstream 19668 59263068 ~ 59275534 (+) False LOC103025639
XM_007256639.3 mRNA downstream 54281 59297681 ~ 59353125 (+) True fndc4
TU39412 other upstream 11297 59228068 ~ 59228699 (+) False LOC111194375
TU39414 other upstream 11434 59228311 ~ 59228562 (+) False LOC111194375
TU39407 other upstream 18960 59220532 ~ 59221036 (+) True G29382
trnal-cag_8 other upstream 41712 59198202 ~ 59198284 (+) True trnal-cag_8
TU39139 other upstream 821179 58417394 ~ 58418817 (+) True G29155
TU39514 other downstream 310926 59554326 ~ 59559752 (+) False atraid
TU39573 other downstream 347589 59590989 ~ 59598241 (+) False nme6
XR_002649037.1 other downstream 1187461 60430861 ~ 60443507 (+) True LOC111190190
trnad-guc other downstream 2449813 61693213 ~ 61693284 (+) True trnad-guc
trnad-guc_1 other downstream 2453400 61696800 ~ 61696871 (+) True trnad-guc_1

Expression Profile