RNA id: XM_022678543.1


Basic Information

Item Value
RNA id XM_022678543.1
length 3105
RNA type mRNA
GC content 0.44
exon number 17
gene id LOC103029590
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 72847549 ~ 72865625 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAATCAGGCTCTTTACTGTCACCGTGATGTAATGAGAGATAgtatcagattcagattcagataacCTCTAAAATGCAGCTCTTAAGGAACAAGAGTTCAAGAATACAAGAAATGTGCATGCTGCTCTGTGCCATTCTATTTCTGTATTGCCAGaTTTCTTCTGTGGGGGCTACCAATCAGACATACATTGCAGAGGTGATGATCGAGGGAAATGCAAGCTTGGACGTCTCTGCTTTTCTGGCTGGACTCCAGTGGCTCGCCACAGACACAGCGACCATCATGGAAGCTACATTAATAGCTCaGTGTGAAATCATTGGTGACGAGACCACATGCTGGTGTGAGAATGGCTATATTTGGAGTGATGTTGTGTGTGACTCTGTAAAAACTTGCTGCAACACTGTCAAATGTGTGGCAAACATATCTGACTACACACCACTATGTGTACCAAAAGTTAACGTTTCTCTGGTTGGAACTATCGACACGGCACTACTGCCTGCAGATTTGGAAACTACActgcaAACTGAATTCGGGGCAATGAATGGGTTCAGTTCGCTAAATGTAACAAAAAGAACCAGTGGTGATGGTCTGGATTTTGTGGTGAATCTCAGTGCCATGTTTAAGACCACAAAAGTAGAAGGCATACTTTCAACAGTTCAGCAGAGTAATGCAGGAATTCTAAATATAAACGTTACCTCAAGAGGACTGGTCAGTATTGATGTCCCTACATGGAAAGTGTGCTATCAATCAACGCGAAAGCTTAGCTGCACTATTGAAGAAGAAATGAACAGCTGCATGTGGCAGATTTCTCGGACTGACCTGGGAACACAGACAGTAGGAGCTGGAACAGAAGTCGACATCTTGTCTCTACCAACATGTACCCTTGACACAGCTATCTTGCTCTTAAACATCACATCGTTTTGGGCAGGAACATACACTTGCATTTTCACTGGAAGTGCAGGAACAGTATCACATGCAGCCTCTGCAGATCTAATGGTCGCTCTCTTACCAGAGGAAATTAATATGACAAGTATCCCACCGAATCCAGATTGTTCTGTGGCACAACAAATTCAGGTTAATGTGACGTGTTCCATTTACAAGAGTAAGGAGGAATATACGGTTGCAATAAATGACACCAGGTTATCACCAGCAGACCCCAACTCTGCAATTATTAGCTATTACAGAACTTTCACCATCAACTGCCTGGGAACTCGCCTACAGTCTCTGATCGCTTACTGTAATGTCACAAACAGTCTGGGCCAGAACACCACTGCTCCTCTAGATGTGCCAATAATATATCCTGGAGATCCAGTTTGTGAAAAAGACGACCCATGGCCAAAAACAAAGAATGGATCGAAAGCAACAATACTCTGCACTGAACCCGGACGAGTGGGAAAAAAGGAACGACTATGCAGTTCTAAAGTTTGGCAAGATCCAATCGACCTGTGTATTAAAGAAGCGCTAAATACAGTGGCTGCAGCAGCTGGGgACTTTGAAAAAGGAGTTGGGGCCACAGAGGATGGGGCTAGTCTTATTTTTGATAATCTCAAGAACACCACTTCAGTTCAGAACACATACGGTGATGTGAAGGCCACCGTAAATGTTTTCAGTACAATGAGTCGAGCATCCTCCAGAGTCACAATGGGAGAGACACTACTGCCAAATTTCATTGACTCCGCGAGCAATATATTGAACACAACCTGGGACACTGATGACAAGAGTAAAGTCAAATTGGCCACAAGTTATCTGACATCTGTGGAAGAACTGGTAAAAAACATCAGACTAAATACCAGTGAGGGACACAATGCTTCAAACGTCCAGCTCCAGGTTTGCCGAAAATCCTCAGTCTGCAACAGAACCGTTTTCAatgtggaggtggaggtgaacTCATCTGCTTCTGAAGTGAAAACAATAGGATTACAGAAAATTGCATCTCTTCTCCCAAAAGGCGCCTTTACGGACGCAATATATCCAAGCCTGGTCGTCTCTGCCACGGTAAACGAATCAGGACCTGTGAACATCAGACTGGCTTTTCCAACATCTGTAGATGATAAGTCTTATTCTACGCCACATTGTGTGTTTTGGAACATTACAAGCGAACGGTGGTCACAAGAGGGCTGTAACTACACCCAGCTCTCTAGTAACATCAGCTTCTGTGACTGTGATCATTTGACGTCTTTCTCTATGCTGTTGTCCAAGACCCCTGTCGACTTGCCGTTTATGGATCAGATCACCTACATCGGACTGGGAATCTCAATCTGCTCTCTGGTTGTCTTCATCACCATTGAGGCTTTGGTGTGGCACGCCGTCGTCAAGACCAACCTCTCTCACTTTCGCCACACCGCCCTGATCAACATTTCCCTGTGTCTCCTTTTAGCGGACTGCAGTTTTGTTGCTGCCACGTTTCAAAATATCCTCACAGACACGTTATGCATACTGTTGACAGTGGCTCAGCATTTCTTCTACCTAGCCATGTTTTTTTGGATGCTGTGCTTAAGCATCATGCTTCTCCATCAGCTTATTTTTGTCTTCCATCCACTGAGAAAGAAGGTGTTCATGATTCTGTCCATGACCATCGGCTACGCTTGCCCGACGTTGACTGTGGGAGCGACGTACATGTACTACGACAAGAGGACTGACGTCCACTACTATAGCCGATCAACCTGCTGGCTGACGTACGATTCGCCGATGAAAGGGTCCATCCACGCTTTTCTCTTTCCTCTTGGAACcattattttcataaatatgttTTCAATGGTGGTGGTCATTGTCACCCTTCTCAAACCTGCTGCAGCAGAGAGCAACAAAAAGGATGACAAAGAGGCAGCTAAGAGTATTATAAAAGTCATCATCTTCCTAACGCCAGTTTTTGGAGGAACTTGGATCTTAGGCCTCTTTGTATTTCTGATGGACGACAACAAGAGCATCAAGCCCTTAATTCACTACTCCTTCACCATAGTTAACTCCTTACAGggcttgttcattttactgacaggatgttttggtgaaaaaaggGTCAGAGATGAAATTGTGAAACTTGTGATTTCTGGAAGGTCAGCCAAAAGTGAAAGCAAGAAGAACCTGACAGTTTCCACTGCGAAAAAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44026 lncRNA downstream 5059 72841849 ~ 72842490 (-) True G32816
TU43943 lncRNA downstream 23751 72803247 ~ 72823798 (-) True G32760
TU43941 lncRNA downstream 34034 72812048 ~ 72813515 (-) False pla2g7
TU43937 lncRNA downstream 44453 72801624 ~ 72803096 (-) True G32758
TU43922 lncRNA downstream 61189 72781826 ~ 72786360 (-) True G32746
TU44065 lncRNA upstream 11435 72877060 ~ 72877774 (-) True G32828
TU44057 lncRNA upstream 36151 72901776 ~ 72904296 (-) False LOC103026087
TU44055 lncRNA upstream 37074 72902699 ~ 72907676 (-) False LOC103026087
TU44060 lncRNA upstream 37074 72902699 ~ 72905523 (-) False LOC103026087
TU44041 lncRNA upstream 72938 72938563 ~ 72984264 (-) False LOC103029909
XM_007245382.3 mRNA downstream 34019 72803993 ~ 72813530 (-) False pla2g7
XM_007245383.3 mRNA downstream 34020 72803993 ~ 72813529 (-) True pla2g7
XM_015604834.2 mRNA downstream 34304 72803993 ~ 72813245 (-) False pla2g7
XM_007245319.3 mRNA downstream 227569 72613438 ~ 72619980 (-) True LOC103032851
XM_015604846.2 mRNA downstream 227947 72613438 ~ 72619602 (-) False LOC103032851
XM_022666201.1 mRNA upstream 4083 72869708 ~ 72919297 (-) True LOC103026087
XM_022678547.1 mRNA upstream 56281 72921906 ~ 73033786 (-) True LOC103029909
XM_022666211.1 mRNA upstream 175843 73041468 ~ 73082008 (-) True LOC103026697
XM_007245399.3 mRNA upstream 225950 73091575 ~ 73127688 (-) True tnfrsf21
XM_007245400.3 mRNA upstream 225950 73091575 ~ 73127680 (-) False tnfrsf21
TU43886 other downstream 149539 72697673 ~ 72698010 (-) True G32714
TU43757 other downstream 305102 72527783 ~ 72542447 (-) True G32611
TU43689 other downstream 605279 72241530 ~ 72242270 (-) True G32557
TU43617 other downstream 865496 71979060 ~ 71982053 (-) True G32492
TU43449 other downstream 1705211 71138486 ~ 71142338 (-) True G32364
TU44174 other upstream 522237 73387862 ~ 73388612 (-) True G32914
TU44213 other upstream 686790 73552415 ~ 73552883 (-) True G32946
XR_002649482.1 other upstream 892345 73757970 ~ 73778866 (-) False ak9
TU44385 other upstream 930838 73796463 ~ 73868538 (-) False LOC111191425

Expression Profile