RNA id: XM_022678667.1


Basic Information

Item Value
RNA id XM_022678667.1
length 1912
RNA type mRNA
GC content 0.42
exon number 12
gene id LOC107197531
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 448393 ~ 468084 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAGAAACCCGTAGCAGAACCGcgttttttttctgagaaatGGAAAGTGAAAGCGGCGGTTATACCGGAGAGACCGCGGGGATTTAGGGTTTAAAGTTTAGTGCTGCAGCTGAACAGAACTGAACATGGAGGGAGCAGGTCTGCAGTCTTCTCCATCTGACAAGACAGTTAAGGATTCCTGCAAATACCTCACTGTTTGCCTTGGACAGACATTAGCGTGTCACACAGACATACAGAATTATCTTTGTGAACGAAGACCTGAACTGGAGGAGGCGATAAATGATAAGGATTATGATGTAAATCTGGCTTTCTGTTATATTGATCCACACCTTTCTTTAAGTGATCGTAAAGAAACAGTTGCAACTTTTCTTGGTAACCTACCAGGATCCAAGCCTCTAGCTCTGGTGGTGCTTCATCAGACACCAGAAAACATTGCTTCAgatatcagtgtagatttaccCAGAAGAAATATGGTAAAAGTTGACTGCCTGCTCCAGGAGAATGAAGAATTACAGCAATGTACGCACAATGAGACCTCACTGAACAAAGTTGCAGACTGGCTCATTTCTGAGgtCAGAACAGAAAAATCAAGGAAACCTCCACCTTCAACACCACCCAAAACAGTGAAAGTTTTCAGTCTTGTTACTGGGAACACACTGGGCTCTCATGAGCAGTTTGTTGGAAGCCTCTGCAGTCAAAGAGCAGGAATACAGGAAGTGTCTACAGTGGAGGAGTGTGACGtcattctgtgtttctgtcccgTTGTTTCTAAAGCTGGAATTAACATTGAAGCTGCACTGCAGAAACTTAACGATTTTCCGGTTACAAAGGATGTAGTTCTGGTGGTTCTCCATCACACATTTAACACAGAGTTCACAGTTCCAGACAGCAGCAGATCTGTATCCAGAGAGAACACACTCACAGTGGACTGTCTGTTCTATGAAGATTGTGGAATACTGCACTGCAGACAGAATGAAGAAGCTTTCAGGACTGTTTTCAAGTTGATGGACACTAAGGCATCTAAAGGACTGGGGAAAATTAAGGAGAAATGGAATAAGTTTACTTCATCAGAAGCTGTAAAACTTCAGAGTCTGCttcagataaaaaacaaaaccaaagtTTTCAGTTTTGTTACTGGGAAAACACTGGACTCTCACAAGGAATTTGTGAAAATCCTTTGCAATCGAAGAGCAGGCCTGCGGGAGGTGTTTACGGTGGAGGAGTGTGACGtcattctgtgtttctgtcccgTTGTTTCTCAAGCTGTGGTTGACATTGAAGCATCACTACaaaaacttaataaagtaaCACAAGGTTCTCAGCCTGTGGTTCTGGTGGTGCTCCATCACACATTTGATGCAGGGAGCATCATTCGTGACAGCAGCAAATCTTTAGCCAGGAAAAACACACTTGCAGTGGACTGTCTATTCTTTGAGGACAGAGGAATACTGCGTTGCAGTAAAAATGAGGAAGCTTACCGCAGAGTTTTAGCGTGGATTGAGTCTCAGGATGACACACAACTGAAGAGGTTTAAGAATGACTCTTTTAGGGAAGAAGAAGGTGCATGTGGACAAATGTGAACAAGCAGAAGCACATGTTCCACGTACCAGCTGCTGAATCATGAGGAACCTCTGAAGATGGTCAAAAattactttgatttttttttcttacgtTAAAAGTTAGAAGCTCTTTTTCTTATCCTGTATaattgccattttggagatttCTGTGTGATAAGTATGATAATGAAATCACAATGAAATCAACCAGTCGTTTCTAATTGGTGGAACTTATTTCATGAGAATTAACAGTCAAGGTCTATGGACCCTTCCCCCCCCACACATTATTGCAATATTTCTTTTCTCAATTGCTCACATTTTCTACAGTATTTACTGGATTTGGCTAATCATGAA

Function

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process

KEGG:

id description
ko04060 Cytokine-cytokine receptor interaction
ko04650 Natural killer cell mediated cytotoxicity
ko04659 Th17 cell differentiation
ko05340 Primary immunodeficiency

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21121 lncRNA upstream 2733 443166 ~ 445660 (+) True G15636
TU21093 lncRNA upstream 56220 318133 ~ 392173 (+) True G15612
TU21026 lncRNA upstream 171212 246855 ~ 277181 (+) True G15566
TU21024 lncRNA upstream 220203 225524 ~ 228190 (+) True G15565
TU21019 lncRNA upstream 241290 203692 ~ 207103 (+) True G15560
TU21173 lncRNA downstream 25186 493270 ~ 493638 (+) True G15660
XR_002649636.1 lncRNA downstream 115626 583710 ~ 588307 (+) True LOC111191745
XR_002651095.1 lncRNA downstream 125571 593655 ~ 597730 (+) True LOC111194483
XR_002651092.1 lncRNA downstream 144953 613037 ~ 615239 (+) True LOC111194479
TU21270 lncRNA downstream 217989 686073 ~ 705802 (+) True G15724
XM_022678644.1 mRNA upstream 8829 430383 ~ 439564 (+) True LOC111194470
XM_007258085.3 mRNA upstream 137529 303636 ~ 310864 (+) True LOC103030708
XM_007258087.3 mRNA upstream 327212 102308 ~ 121181 (+) True LOC103031762
XM_007258092.3 mRNA upstream 354501 89699 ~ 93892 (+) True LOC103033126
XM_007258093.3 mRNA upstream 392293 41692 ~ 56100 (+) True LOC103033448
XM_022667468.1 mRNA downstream 15055 483139 ~ 494369 (+) True LOC107196798
XM_022678704.1 mRNA downstream 41488 509572 ~ 524138 (+) True LOC103028849
XM_022678694.1 mRNA downstream 82959 551043 ~ 558402 (+) True LOC103023152
XM_022667504.1 mRNA downstream 132344 600428 ~ 609429 (+) True LOC111191737
XM_022678737.1 mRNA downstream 854438 1322522 ~ 1340800 (+) True LOC103025578
XR_002651096.1 other downstream 124144 592228 ~ 593633 (+) True LOC111194487
XR_002651100.1 other downstream 854432 1322516 ~ 1332791 (+) False LOC103025578
XR_002651098.1 other downstream 854432 1322516 ~ 1332281 (+) False LOC103025578
TU21431 other downstream 1213075 1681159 ~ 1682022 (+) True G15839
TU22663 other downstream 5704672 6172756 ~ 6177884 (+) False LOC103025913

Expression Profile