RNA id: XM_022678744.1


Basic Information

Item Value
RNA id XM_022678744.1
length 3665
RNA type mRNA
GC content 0.40
exon number 18
gene id LOC103025578
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 1322516 ~ 1340800 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGGTTGTCAGGAAACGCACTCCAGAACTGTGAACTTCTCTGCATGAATTAGATGCCTGTAgtcaaatattaataatattttattatgcctTTCCTTCCTCAGGGTTTAACTCCACAAATGGACAACAGagGCGATAAAAGACCAGCTGGAAATGACAGCTTTTCTACGCCACCTGGGACCCATAAAAAATCAAGGCCTTCTAGCCCAGAGAAAACAGGTGAAGCAATAAATATTAGAAATGCCCGGAGGATTATGGCAAAGATCAAACATAGACTCAATGGATATAAAAATGAAGACAACCCTACTAAGAAGCTGATTGAATATGTCAGGGAAGACATCTCCAAACTGGACATcagtataaaaaagaaaactactgTTGGAGTTTTTGGAAAGACAGGAGCAGGAAAGAGCTCTCTGATAAACGCAATCCTGGGAGAAAAAGATCTGTTACCATCAGGAACACTTTGTGCCTGCACTTCAGTCATCATACAGGTTGGAGCCAATGTAACAGACTCCAACTACACAGCTGAGCTTGAATTCATCTCAAAAGAGgAATGGGATGCTGAACTTGAGACTCTTCTGAATGTCTTATCAGAGGATGGAGAGGAGAAGGACGGTGCACTGTTTAATACAGCAAATGAGAAGATTACAGCACTGTATGGAGAGGATGGTGTTTTTCTGTCAGTAGAAGACCTAAAAAAAGACGAACATTTCACAAATATACCAGAGTTTCTCAAATCTAAAATCAAAAAGATAGTATGTGAAAAGGCCTCAGATCTCTCAGATGAGATTGGATGTTACATTCAGCATGATGACTCTCGTCCGGGTGAAAGTTACTGGCCAGTAGTGAAGACTGTGACCATAAAGGTTCCAAACTGCAAAGATTTTCTGGAACATGTAGTTCTGGTGGATCTCCCTGGAACTGGAGATTACAACAAGAGCAGAGATCAGATGTGGAGAATGAAATTGAGAGATTGCTCGACAGTGTGGATTGTAAGTGAAATAAATCGTGCGGCTGCTGACAGAGATGCCTGGGAGATTGTTTCAAGCAGCATAACTGACATGGCACAAGGAGGAGAGTGCAGCAGCCTCTCTTTTATCTGCACCAAGACTGATGACCTCAACCCACAGAAATACATGAAagcCTCAAAACTGAAGGATGATGACTTTCATATCACACCAGAGGACCCTCAGTATggcaacaagaaaaaaattgcATGCATAATGCACAGGAATGGAAAAGCCAAGGAAAAGGTGAAAAAGCAGTTTCTTCAACAAGATAcaataaagAAACACTTTGATTGTGATGACAATTTCCTGTCTGTGTTCACCGTGAGTTCTGAAGAATTCACGAAAGAGGATCCAATCCTGAATCAAGAGCAAACAGAGATACCTGCTCTCAAGGACCTCTTGAGGAAGTACAACATCAATCACATTAATGAGACAACGCATCACTACATCTCTGGAGCTCTGGGAATCCTCTCCCTAATCCAAGGTTCCAAGGAGAGTGATGCCAAAATGatGGTGGAGAGATCCAAACTCTATGCTACTTTGGAAAGAGATCTTCACCAAGCACTTGGACACTTGCACGAATATTGTCATGAAATTAAAAGCTCACTGCAGGCACTTCTTGCAAAAGGAGCAAGTGAATCAGAAGAAAAAGGTGTTGAAACAGCAAAAGAAGTCATTatgAGCAGTCGACACCAAACATTGACCGcactgtgtaaaaatgatgGATTCTTCAGGGCAAAGAAAGGAGTAATTGATTTGAATTCAAGCTTGGCTAGACCCATGTTTCAGCACATCAACAGCGAATTCAGTGAATTCTTCCCggtCCAGGGGAAAGTAACTGAGAAATCACTGCAAGCTAAGATCGATCAGTTCACCATCATTACAGAGGACCTGCtcacaaaatatgaaaattcgCCAGTGCTGAGTCACGTGCTGAAATTCCTTAAGATTGAGGAAATGAAACTGAAGAAAGTCCTTCAGCAGGAGATTgttgagaagaaaaagaaaatatacacaTCTCTTTATGAATCCATTCAAAAGAACATGCAGCCATGCTATAAAGATGCTGCTGCAATTAAAGGACGTGGCAGCATGAATAAAAAGAAGGATATGCTCCGTGACCACATTGAATCATCAAAAAGTGAAATGTTCCAGGAAGCAAAGAGAAACATGGTGGCACTGCTGGATCGCACATTGGAATTTACTGTGGAGAAGATAAGAACTGGACTAATGGAATCAATTGATGTCTCACTTCTTAATGAAAACACTTTACCTTTCATGGaCATCAGAAAAGACATAGAATTACTGAAGATGTTATCTCAAGAGTGACATTCATCATCCACAGATTTGTGAAACTTCACTGGTGCTCACATTAGAATGTTTGTCAGCagctattattgttattattgtggtGTTTAAAATGTCTGATGCTTTGGGAGTGGGGTTTGACCttattatactgtttttttttattatatactgcttttttattatatactacTTTAATCAAAAGGTTTTTAGTGATTTTCAACTGCTAATTGTAACCATTTATTTACTAGTATCACTGCTGCCAGAATTTAGCTAAATCCTAATGTCTGTCTTTATTTTTCCCTCACAAAAACATGTTTGAGTAGAAGTATTTTTGTTATTCACTGCATTTTATACATATAGCTTTGAAATCAGGTAGTCTAATAACTTCCATGGCGAcatgtgtataaaaccaaggaccagactgcttctacaaacattagtgaaagaatggatCACTCTCAGGAGTTCAGTGAATTCATTTATGGTACTGTGCTCTGACTGTGAGACTGACACTGTCTACTGCTCTCAGGGATTATGTCACACGCAGCGCCGTGCGCAGTGCCCTAGTGCCTGTAAATGTAATGGTCCAATgtaggtaatttaaaaaccaggacatttcctcactttaaaaaaaaaacgtgaaatacggacatgtcccgggaaatacggacgtttggtcaccctactATAGCAGTAGAGACATGTTCTTTAGAGTGGAGAATCATGCTTCTCTGTCTGCCAATACGAAGAGTCTGGGTTTGGTGGTTGCCAAGAGAATGGTACTTTTCTGACTGCATTGTACCgaatgtaaagtttggtggagggggattatggtgtggggtgttttttttttaggagatgGGCTTAGCCATTTAATTCCAGTAAAGTAACTATGAATGCTTTAGTTTACCAAGAGACTTTGGGTCATTTCACACTCCGAAATTTGGAGGAACAGTTTGAGAATGGACCCTCCTGTTCCAACATGACTGCACACCGGTGAACAAAGAAGGGTCCATATAAAGACATAGCTGAGCGAGTTTGGTGTGGGAGAACTTGACTGACCTTAAGCCAATAGAACACCTTTGGGATAAATTAGATTGCGAACCAGGTCTTCTTGTCCAGCAACACTCATACACCTTGTGGAAAGACTTCCCAAAAGTCATTCATGTTCATTTACATCTGGCAACATAGTATATCTTATTCATGATGTATCGAATGtatgtaattttaaaacttaatttatcTGACAATGTTTACTTTCCAATGCACTTAAAAAGTTCAAAGTATGATTTGGTCAATTTACTTTGAATGATGATgacaataaatgataaatacatTCCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21270 lncRNA upstream 616720 686073 ~ 705802 (+) True G15724
XR_002651092.1 lncRNA upstream 707283 613037 ~ 615239 (+) True LOC111194479
XR_002651095.1 lncRNA upstream 724792 593655 ~ 597730 (+) True LOC111194483
XR_002649636.1 lncRNA upstream 734215 583710 ~ 588307 (+) True LOC111191745
TU21173 lncRNA upstream 828884 493270 ~ 493638 (+) True G15660
TU21302 lncRNA downstream 69133 1409933 ~ 1412569 (+) True G15748
TU21305 lncRNA downstream 74382 1415182 ~ 1420808 (+) True G15749
TU21340 lncRNA downstream 113527 1454327 ~ 1457428 (+) True G15771
TU21393 lncRNA downstream 187255 1528055 ~ 1529400 (+) False fdxacb1
TU21400 lncRNA downstream 240713 1581513 ~ 1581946 (+) True G15813
XM_022667504.1 mRNA upstream 713093 600428 ~ 609429 (+) True LOC111191737
XM_022678694.1 mRNA upstream 764120 551043 ~ 558402 (+) True LOC103023152
XM_022678704.1 mRNA upstream 798384 509572 ~ 524138 (+) True LOC103028849
XM_022667468.1 mRNA upstream 828153 483139 ~ 494369 (+) True LOC107196798
XM_022678676.1 mRNA upstream 854438 460501 ~ 468084 (+) False LOC107197531
XM_007245217.2 mRNA downstream 97006 1437806 ~ 1442109 (+) True cryab
XM_007245220.3 mRNA downstream 116670 1457470 ~ 1469889 (+) True LOC103029064
XM_007245222.3 mRNA downstream 116670 1457470 ~ 1469889 (+) False LOC103029064
XM_007245225.3 mRNA downstream 156908 1497708 ~ 1500545 (+) True ufc1
XM_007245230.3 mRNA downstream 175697 1516497 ~ 1529417 (+) True fdxacb1
XR_002651096.1 other upstream 728889 592228 ~ 593633 (+) True LOC111194487
TU21431 other downstream 340359 1681159 ~ 1682022 (+) True G15839
TU22663 other downstream 4831956 6172756 ~ 6177884 (+) False LOC103025913
TU22722 other downstream 5191596 6532396 ~ 6532868 (+) True G16820
trnat-ugu other downstream 5309905 6650705 ~ 6650777 (+) True trnat-ugu
trnat-ugu_1 other downstream 5311180 6651980 ~ 6652052 (+) True trnat-ugu_1

Expression Profile