RNA id: XM_022679537.1


Basic Information

Item Value
RNA id XM_022679537.1
length 3082
RNA type mRNA
GC content 0.56
exon number 16
gene id tex10
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 6185481 ~ 6229459 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTGCGACGCATCCAGCAGCCTGTGTTCATGAAGGACCCCAAATGAACAATCGCCCATAGAAAcacattttgattattttggagaaaataatttaaaataaagctgaTCTGATTCGTTTCTGCTCTGAGAGCTAAAGCGCCGGACTGTAAAAATGACCAAGAAGAGGAAAAGGCAGGACGATTTTCATAAAGTCAAACTAAAAGTAGGCAAGAAGAAGCCCAAGGCTGAAAATGCAACCGACACCAACTTCAGATCAAAGAGCATCCATTTACCGGAGCAGCTGACTCGTGACGCCAGTGGACCCACCACTCACCGGCAGCTTGGCATTaaggACCTTCTCTCTCAGCTGCACCACTACAACAGTAATGTGAAGCTGGGGGCTCTGGTTGGTTTGCGAGAGCTGCTGTCGGCGCACccctctctggtggagcagcaCGCCTCTGTGGTGCTGACCGAGGTGGCTGCACTCTTCACTGATAAAGACGGAACGGTGCGGACAGCGGCAGTGCGGCTCCTGCGCTTCATGGCTCAGTGCATTCCCGCTGAGCGGGTCGCCCCTTTCTTCCCCCTCCTCAGTGCTCACCTCACCTGCGCCATGACCCACATCTCACAGGGTATCCAGGAGGACGCTCTGCGGGTGCTGGACGTGCTGCTGGAGCACTACCCCACCCTGCTGTCCCAGAGGCACACAAAGCTTCTGACCAACTTCTTGGAGCTCATCTCACAGAGGAGACTGGGCAAGACTGCGGGGGACAGGACAGTTAAAGGCAGCTACGCCCTGTCCATCACCACCAACCGCTCGCTGACAGCCCAGCAGTGGAGACTTACTGTCCTTCTCAGgttagGCCGCTTTCTACAGGCAGTAGTGGAGGAAAGGCCCACAGAAGATGGTGTGGCATGTGGAGGTGGAGTTGGGATGTGGAGTGAAGAGAAAGGTGTGGTGACGCCTGTGGAAGTCAGCTGGGAGGAGCAGATATTCAGCAAAGGAGGAATCCGGGTGTTTGAGAACTCTGGAGTCAATCCCACACCACACTCCACCTATCGGCTGAGGCCGGATTCTGAGCCCAGGACTAGTGTGAGTGAGGATCTGTGCTCAGCAGAGACGGTGCAGGGCTTTGCAGAGACTCTGGTGCCGCTGCTTTTGGAGGTGTGGGTGGAGGCCATGGGTGGGGACAGCAGAACGCAGTCCGACAGCGGTCACCTGCTTTCAGAAGAGGCCATGGCACTCATGTTCCAGATCCTTACAATACTGCAGCTTCTGCGGAGGCTCGTACCGCATAGAGACCAGCAGGATTTGCTGGATGCCTGGTTTCGGAACACGTATCTCAACGACTACAAACAGCACTTCATGAAGAACTTTCCCTATGGTCAGCTAGAAGTGGCCAAGCACAAGAAAAAAATTGACATTAAGAGGAGCAGGCAGCAGGTGGTGGGTGGTGGTGTTGCTGGAGGAAACGTGGAGCCGTTGGCTCTGAATGTCATGCTGTGTCAGGTGATGGTGACTCTCAGCCTGAGGGGGCGGGACAACGTTGCCGGCCTGGATTCAGACTGGCTCGGACCAATCCGAGCGTTTGTCACGGACACGCTGTCCAATGGAGGCAAGCTGAGCTCCAAGCACCTGGCGGCCCTGCTGGAGGTGGTCTGGAGGATGATCATCACCCAGCGAAGCCGAGCTGTGACCGAGGAGCTGCTGCAGGCAGTATATGTTCAGTACCAGCAGAAGAACTTGAGCTTGTCTGTCCGCACCCTCCTGCTTCGCTTCTTTAGACAACTCTACATACAGGAGCATCAGAAGCAGCCTCATATtgccaggagcAGGATATTAGCTCGTTGGTTGGCTTCATTGCCAGTGCAGTTGGTGCAGCTGGGCAGTCGTAATCCTCAGCTCTCGGCGCAGCTCCTGCAGACGGTGCAGTCGGCCGCCGCGTGGGGCAACAAAGACCTGCTGCGCAGTCTGCAGACGCATGCTTGCAGCCTTTACGatcctCAGGAGGGCTGCGTCGTGGTGTTGCCGGTGGAGCATCAGCAACAACTTGTTCAGATTCTCTACTTCCTGCCAGCTTTTCATGCTGATATCCTGGCCTGCCTCAGCCAAGTCTGCAACACTGGGAAAATCTCAGCTAGCCTAGCCGCCACACTCATCCGCACCGTACACCTGAGGTCTCCTCTAAGTGGCTGGTCGAGCAGTTCACAGGATGTGCCAGTGAGGGACGTGGATTACCTCAGTTTCCTTTTCTCCACTCTGACAGGATTTTCTTCGGAGGGTCTGAGAGTGCTCCAGCAGGCAGGAGAAGAAGGCCTGCTGCCCTCCTCGTCCCTCTCACCCCTCAGTGTGTTCCCCACCCCGCTGGAGCAGTTCACACACCACTGGGACGTGGTTGAGGAGGTGTGCCACTGCTTGGAAACTCTGGGCTCTCGGTCTCAGTGCTTCGATGTTCTGCAGAATGCTATTGTGAGGAACCTGTGTGGGCTGGTGGTGGTGCCAGACTGCGTGTGTGCCGCAGTGCTGAGGTGTGTTCCACGCCTGCTGGATCTCAACTTCCTGCCCAGCGACACGCTCCTCCACTTCCTGTCTGACTGCTGTCTGAGCATGCTCAGTCTGCTGCTCCAGCTGGAGCAGAGCGCCCGCAAGAGGGATGCGGTGTGGGAGGCGTGTTTCGCGGCTCTGAGCACGGTGCCTCGGCTGCTGCGGCTGGTGCTGCAGTCTCTGCGCGTGTGTGACCTGTGTGAGTCGGAGCTCCCTCTGCTGGCTCAGATCCTCTCGCTGCTCCTGCAGCACACGCAGCTCCGTAACCACATGGCTGCCAACAGCGCCCTGCTGCAGAACATCATTCAGGACCTGACGCGTTTCTCTGGCGGGGAGACTCGGGAGCAGTGGCTGACCGACCTGCTCTACTGCTACAGCGTGACCGCCTCCACTCACCGAGCCAACATGGCTGCTGCGAGGGACATCTTCTAAGCAGCGCCgtgattcagtgtttttcctcttcagtgttctttaatcctttctttattcttttctccattttcacatttttttaaaaacgagggAAAAAATAAACCTGCTGTGATAATTACTTAA

Function

GO:

id name namespace
GO:0071339 MLL1 complex cellular_component
GO:0031965 nuclear membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005730 nucleolus cellular_component

KEGG:

id description
K14827 IPI1, TEX10; pre-rRNA-processing protein IPI1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22643 lncRNA upstream 85132 6091736 ~ 6100350 (+) True G16755
TU22644 lncRNA upstream 85132 6092844 ~ 6100350 (+) False G16755
TU22618 lncRNA upstream 177434 6002303 ~ 6008048 (+) True G16739
TU22615 lncRNA upstream 228603 5955445 ~ 5956879 (+) True G16736
TU22611 lncRNA upstream 291005 5892812 ~ 5894477 (+) True G16732
TU22673 lncRNA downstream 1806 6231265 ~ 6233096 (+) True G16779
TU22696 lncRNA downstream 128105 6357564 ~ 6360468 (+) True G16799
XR_002651238.1 lncRNA downstream 186403 6415862 ~ 6438882 (+) True LOC111194764
TU22726 lncRNA downstream 307420 6536879 ~ 6538980 (+) True G16824
TU22730 lncRNA downstream 345078 6574537 ~ 6574776 (+) True G16828
XM_007229447.3 mRNA upstream 12583 6168760 ~ 6172899 (+) True LOC103025913
XM_022679499.1 mRNA upstream 105431 6049397 ~ 6080051 (+) True LOC103023602
XM_022679494.1 mRNA upstream 152739 6012790 ~ 6032743 (+) True tbrg4
XM_022679469.1 mRNA upstream 520839 5440694 ~ 5664643 (+) True znf804b
XM_007236707.3 mRNA upstream 976519 5198691 ~ 5208963 (+) True LOC103032089
XM_022679550.1 mRNA downstream 63613 6293072 ~ 6323895 (+) True erp44
XM_007229458.3 mRNA downstream 314816 6544275 ~ 6552001 (+) True alg2
XM_007229461.3 mRNA downstream 364008 6593467 ~ 6603875 (+) True frrs1l
XM_007229460.3 mRNA downstream 377526 6606985 ~ 6641935 (+) True tmem245
XM_015604598.2 mRNA downstream 377527 6606986 ~ 6641935 (+) False tmem245
TU22663 other upstream 7598 6172756 ~ 6177884 (+) False LOC103025913
TU21431 other upstream 4503460 1681159 ~ 1682022 (+) True G15839
XR_002651100.1 other upstream 4852691 1322516 ~ 1332791 (+) False LOC103025578
XR_002651098.1 other upstream 4853201 1322516 ~ 1332281 (+) False LOC103025578
XR_002651096.1 other upstream 5591849 592228 ~ 593633 (+) True LOC111194487
TU22722 other downstream 302937 6532396 ~ 6532868 (+) True G16820
trnat-ugu other downstream 421246 6650705 ~ 6650777 (+) True trnat-ugu
trnat-ugu_1 other downstream 422521 6651980 ~ 6652052 (+) True trnat-ugu_1
trnat-ugu_2 other downstream 424125 6653584 ~ 6653656 (+) True trnat-ugu_2
trnat-ugu_3 other downstream 425414 6654873 ~ 6654945 (+) True trnat-ugu_3

Expression Profile