RNA id: XM_022679643.1


Basic Information

Item Value
RNA id XM_022679643.1
length 4908
RNA type mRNA
GC content 0.42
exon number 19
gene id cdh17
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 7017957 ~ 7046918 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TAAGCAGGAAGCACACCAGGCTCTGTGAGCTCTTTTCTGGTTAGTCGTGGGCCAGTCGAGGAGCTCTCTGCTGGTGCAGGATTTATTTTTCACGATGGCAAAAGCACATCTGCTGCTCCTGCCTCTACTCATCTGCTCTGTTTATGGAGTTAGTCTGGAGGAAAAGAAAGGCCCACTGGACAACAGAGTGTTAGATGTGCCGGAAGCCACACCTGTGCCATACGCCATTTTTCAGtttATTTCTGCAGCAGATGGTGTGTCAGCGTACCGTGTGAGTGGTGAGACAGAGGGGAAGATCAGAATATCTCCAGATGGATGGCTGTACCTTGAAGAACCGCTGGAGTGGAGCCCTggcaaaacacacactctaactATTGAGGCTCTCTCAGCGGATGATGAACCCATTGATGGACCTTACTCAGTTATTCTTCATGTCACAGATGTAAACAACAATCCTCCTGTCTTCACTCAAAGCCAGTACAGTGGAAGTATTAGAGAGCATTCCCCTGCAGGGGTGCCATTTCTGCAAGTGTCCGCCATTGATAAGGATGATGCAAACACACCTAATGCTGTTCTGAGCTACAGCATCGAGAGCCAGTTCCCCAACCCTACAGGCCAACTCTTCTTCTCCATCAACCCAAACAACGGAGAAATTTCCACCACAGAAGAGGGAGCAGCGTTTCTAAGAGCCAGAAATGTACTGGGACTGACGTACAGTCGTGGTGAGACCCGTGGCAGTGCCGAGGTGCTAAAGAAGAAGTTTGATGAGTTCTGCACTCCAAAGAATGAACTGCCTATTGAGAACAACCCATTCTTCACATGCGTCCAACGTGCcgAGACCAGGAGATTTAATGCTGTTGAGGATCCAGACTACACCCTGATTGTGCGAGTGGAGGATTTAGGAGGCGGAGTCCCCAATTCCCTCAGCAGCACTGCATATATCAACATAGCCATCACTCCAAACTTATGGGTCAATCCTGGGCAAATCCGCATCAAGGAAAACTTGGTTCATAAATATCCCAAGATATTAACCTCGgtACGGTCCAATGACCCCAATGCACGCTACAGGCTGGtgcagaaggagagagaaattCCGTTCCCTTTCACTATTAATGTAGATGGAGAGATCTTCGTCACTGAGGCCTTGGACAGAGAGCAGAAGGACATGTACATACTGGTGGTTTTGGCAGAGGATAAAGATGGTGTCGAGCTGGAGTCTCCTATGGAGATCCAGGTGAAGGTGGAGGATGAGAACGATAACGCGCCTGTTTGTGTACACGCTGAAAGTGTGTTTGAGGTTCAGGAGAATGAGAAAGTAGGCAGCCAAATTGGTGATCTGTTGGTTCATGATGCGGACGAAGAAAAAACAGTGAACTCACTGCTGCACTACAAACTTCTGAGCCAGAGCCCCACCAACCCTGCTGACGGGATGTTCCACATTGACGGCACACGCGGCAAGATCCAGGTGGCCAAACACAACTTCCGCAGGAAGGACGTTCCAGAGTATCAGCTCAAGATTGGAGTTACCAATGGAGGTTTCAGCACAGAGTGCAGCGTCATCATCAGAATCATCGACATCAACAATGAGATCCCCATCTTTGAGAAGAATGATTATGGGATATACAGTGTTCCGGAGCTTGCTgaggtgggcaccactctgctGAACATTAAAGCTACAGATGCTGATGATCCAGGCACAGGCAGCTCCAAGGTGGAATACCACATCACTTCAGGAGATCCAGACAAACTTTTCTCCATAGAGGTTGATGACGCCACTGGAGAGGGCAGAGTCTACATTGCACAGCCTTTGGATTATGAGGTTCAGTCTACCTATCAGCTTCAGATTGATGCTCGTAATCCTGAGCCGCTGATTGAGGGGGTTCAGTACAATGAAAGCTCCAGTGCAGTCGTGGTCATTCAGCTGGTGGACGTGGATGAGCCTCCTGTGTTTAGTGTGGACATCCTAAACGTCAACGTCCCAGAAAATGTGACAGTGGGGACCGTCCTCTTGACAGCTGAAGCCAAGGATCCAGAGGAGAAAAAGATTAaGTTTAGGCTGGAGGGCGATGAGCACGGCTGGCTGGAGGTGGATCCTGACTCTGGAGAGCTGAAGACTAAAGCAGAGATGGATAGGGAAGTGGTTGAACAGCTTAAAGTCCGTATCATCGCCTACGAGACAGAGGATCAGAAGCAGGAGGTTGAGAAGGAAGTGTCCATCCAGCTGTTGGATGTGAACGATAACTTCCCTAAGCTGCAGAAGACTCAGGGATTCATGTGTGTGAAACAGCTGACCCCGCTGGTGCTGAACGCTGTGGACGGTGATGCGGAGCCCAACGGAGAGCCCTTCACTTTCTCTCTGAATATGGTCCGCAAATCACCTAACTGGGAGATCACTCCAGTGGACGGAACATCAGCTAAACTGATTCTGAAGAAGAGACCCACCACTGACCAGACCTACAACATTCCCATTAACATCAAGGACAACGCAGGCATGGGTGTTACTCATAAGTTTGAAGtgcgaGTATGTAACTGTACTGAGTTGGGCTACTGTTACATGGAACCAGGGACTCACGCCTGGATGATGGGTGTATCCGGCACAGTCGGCATTCTAGGAGGAGTATTGGGATTTATCTTGCTGCTCCTGATCATCGTCATTTACCGCATCAAGAAGAATGACAAGAAGAAGGACAAAAACATGGCTGACGGGGAAACCACCGTCATGCTCTAGATGCCGTGTCCAGTTGCGCCCTCGGTCGTCACATGCGCACGTGGTGGTTCGTTCAGTTCAGCCTCTGTTTCAATTTACTTTCTCTCTGAAATTCACAAAGAGACTGTACTGTCTGACCTCAGAGGGAGGAAGGAAGGGAGGGGTGTATTTTAAAATTGGCTGGTAATACAGTGTAGCTGTGCACATAAGAGGTTCTCCTTGTAACTTATTATATGTGAGTACAGTCATGTTCTGTTTTGGACTATACAAACTGTCCTAACACAAACTCCTCAACCGTGTCACTATTATATTTCCCAGGTCAAAAAACTTCCTGTATCCTGGATCtatcaaataaattaagagtCTTATGACAAAAGATGCCCAGTTTTACATAATTCttccaaacataaacctatatcTATGTACGTCAACCCAGACCATGGTACAAAAGTCTTTATCCAATAGCtaataataaacattgaacCCTTTTGTCCCTTTTGGTTCTttagaaaaacacttttataaatAAGTGAGAAAACCTTTTAGTTAGTGATGCGACAgttctttaaacctttaaaatgtcttttaaaattatttcttCTACAACATTGCTCCCAGCAGCTCAAATCTGATTCATTGGCATAATACATTTGAAAAGGACGGACTTTTTTATTGTGAACAATACCAACAAGGCCAAATCTTGCTTTTTCAATTTGATTTGATCTTTGTTTTATGTGGCATGAAATCTGATTCAGATTGTGAACAGAGtgtgaacaaaaaaacttttatgcCACCTTTTTAAGTATATGCTACCTATAATCTCAACCtaattatacttttatacattaTGACTTATAGGGCCCTATGATTTCTGCAGTGCAGAGAACATGGACAGAATAgccaaattaaaattaaaatgaatttcaaatacaatgacaaaacattttacaaataacttatatatatatatatataaaaaaatcttaattagaTAAGATGTTAATGCCCTCTAAATATTTAGGCAGCTCGTATAATCTTTGACCCATAACAGCAGCTCAACCATTTTTACTGTACCTGACTCTCTCCATTTTTCTGACAGTTGATCTTTACACTGTGCcatatttttgtgataaatggaccaatagaaattagtgctgcatatatatatatatatacatactatatatatactatatgtgTATAGTTTTGTCGTTGTCATCACAATGTTCACATGCACAATAATAATATCACAGGATGTGCAATATCATGTAAGACAAAGCATGCATGTAATTCCATGACTTTCATAAAAAGTTTTATATAACATATCTATGAGAGTTAGATTATATCTGCCTAAACACCTTTTTATGTTCATGACATGTTCATTGATTTCtgataaaatatggtaaaaacaatcctgtattatttaatatagtaCAATATACGGCAGAAACAGGAAAAtcatctttttacattgatttttcaTTGAGAGAATTAGTaagtgagatacagagagatttTTGTGTGATGTGTGGTGTGACAGTACAGAAACATTATCTGATTATCTGATAATGAAGAGCTTGTGAGGTAGAATATAAATGGAACAATTGGGCTGGGCCCTGTGTGTAACCCCAATTATTAGGTGCAGGATTAGTTTTTATCTTATCCTGTATCATCTCCCCATTGCCTTTACtaattaacccttttagaccctcTTGTTTAAGAGGGTGGAATAAATTATGAAGGAGCTTATTTAGCTAGCTGTTTTATCATTAACACTCCATCTGCTCTCTGCCTGTATTCTCCAGCTGAGGAGGCTGGTCTTCGCTATTACCTGCTGCTACTgaagatgattatgatgatgatggtgattgtgttgattttgtgtgagtgtgatcagtGCGGGTCTGTACTGCTGCATGCTCTGTTAGTGTAATAAGTGCTTTACTGTAATGCTAGGTATAATCTTATATCTATTCTTATAATGTAAAATCAGTATAAAAGTGTTGAAATCATGCTGAAGTTTTGAAACCAAGGGTCTCTTATTCAGCTTTATACACTCTCTTCAGAATAGAAAGTTATTCTCTATTACATGAACTATAAGTCACATCTTTTTGTTCTGTTAATAAACATCCCCtttaaataagaatataaaCATTTCAGCAACACTGTACtctaaacaataaataaatgtgtgaaaagtg

Function

GO:

id name namespace
GO:0048793 pronephros development biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K06811 CDH17; cadherin 17, LI cadherin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23073 lncRNA downstream 2113 7012003 ~ 7015844 (-) True G17093
TU23065 lncRNA downstream 16801 6996398 ~ 7001156 (-) True G17086
TU22904 lncRNA downstream 99300 6918196 ~ 6918657 (-) True G16965
TU22901 lncRNA downstream 118477 6899211 ~ 6899480 (-) True G16962
TU22889 lncRNA downstream 234726 6775573 ~ 6783231 (-) True G16951
TU23102 lncRNA upstream 101659 7148577 ~ 7155902 (-) True G17117
TU23106 lncRNA upstream 139275 7186193 ~ 7186801 (-) True G17121
TU23107 lncRNA upstream 139947 7186865 ~ 7187855 (-) True G17122
TU23109 lncRNA upstream 159094 7206012 ~ 7210744 (-) True G17123
TU23132 lncRNA upstream 274581 7321499 ~ 7322308 (-) True G17144
XM_022679618.1 mRNA downstream 121137 6675076 ~ 6896820 (-) True galnt1
XM_022679620.1 mRNA downstream 121137 6679799 ~ 6896820 (-) False galnt1
XM_015604595.2 mRNA downstream 473682 6534859 ~ 6544275 (-) True sec61b
XM_022679574.1 mRNA downstream 606536 6373166 ~ 6411421 (-) False nr4a3
XM_022679571.1 mRNA downstream 606538 6368118 ~ 6411419 (-) False nr4a3
XM_007236504.2 mRNA upstream 10514 7057432 ~ 7065913 (-) True LOC103045397
XM_007236506.3 mRNA upstream 28885 7075803 ~ 7099361 (-) False rad54b
XM_015602248.2 mRNA upstream 28885 7075803 ~ 7098230 (-) True rad54b
XM_007236505.3 mRNA upstream 42662 7089580 ~ 7093507 (-) True fsbp
XM_007236511.3 mRNA upstream 65132 7112050 ~ 7139126 (-) False virma
trnat-ugu_80 other downstream 29146 6988739 ~ 6988811 (-) True trnat-ugu_80
trnat-ugu_79 other downstream 29698 6988187 ~ 6988259 (-) True trnat-ugu_79
trnat-ugu_78 other downstream 30250 6987635 ~ 6987707 (-) True trnat-ugu_78
trnat-ugu_77 other downstream 30802 6987083 ~ 6987155 (-) True trnat-ugu_77
trnat-ugu_76 other downstream 31354 6986531 ~ 6986603 (-) True trnat-ugu_76
TU23350 other upstream 882371 7929289 ~ 8007239 (-) False LOC103026934
TU23805 other upstream 2515509 9562427 ~ 9562725 (-) True G17638
TU24000 other upstream 3199757 10246675 ~ 10247318 (-) True G17792
TU24180 other upstream 3969111 11016029 ~ 11080151 (-) False LOC103047439
TU24181 other upstream 3969111 11016029 ~ 11080151 (-) False LOC103047439

Expression Profile