RNA id: XM_022679656.1


Basic Information

Item Value
RNA id XM_022679656.1
length 1512
RNA type mRNA
GC content 0.50
exon number 8
gene id LOC103046513
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 7101581 ~ 7111945 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGTGTTCTGCATGCAGCATCTGAGAGGATACCAGTGTACTGGGGTCTAAATATGACAAGAAAAGACCTGGAATGTGAGGAATATTAAACCCGTGTGCAGCTGCTGGTCCTGTAGTTCCCAGGGAAACCACCAAGTGTACCCTCCTCAACCACCACTGAAGAGCAGCAGTAGAGACAGACAGGTGTGCACCAGTTCTGACAGTCtgtgtgtggaggagcaggATGGGGTATGACGTGGAGCGCTTCGTGGGCTATGTAAATGAGGGtctgctgtgctgtgtgtgtcgGGACGTGCTGGAGGACCCTCTGCAGGCTCCGTGTGAGCATGCTTTCTGCAGCACCTGCATTCACGCCTGGCTCGTCCACCACCACAACTGCCCAGAGGACCGGCTGCCGCTGGACATCACAAACCTACGGCCGCTGTACAGgtacATGCGGAATGACCTGGCGAGGCTCCAGATGAGGTGTGTGTATCGCCCGCAGGGCTGTGAGGTGATCTGTGCTCTGGAGTCCATGCATCGACATGAGCAGGAGTGCGACTTTGCTCTGCTGAGCTGCAGTAATGCTGgtgaggAGTACTTGTGTTACCGCTGTGGTAGGTTTacatgtTGTCCAGTACAGGTGTCTCGGCGGTCTTTGGAAGcccacctgtgtgtgtgtgagtaccgGAATAGAATGTGTGCGAGTGGCTGTGGATTCACACTAACCAACACGGAGGAGGCTCAACACAACTGCATCTCCGAGCTGCGAGCTGAACTGGACTTGCTGAGggcAGAGTTAGACTGTAAAGTTGAGGAGGTGAGGCGAGAGATGGAATCACGGCTGGATTCTCAGAGGAGACACATGGTGCAAAAAGAGAGTCTACTGAAGAATGAGGTGGATGAACTCAAGGGCCAGCTGTCTCGTGTGATGTCAGATGTCCGTGTGTTGCTGGGCGCAGAGCGAGCTCGCCGGCAGGAGCTGGAGAGGGCAGAGCTCGAGAAAGCAGAGCTACTGGAGCTTCTGAAAAAGGAGGGGCTTAGGCCAGCCACGCCCACTCAGACTGCAACACCCCCAGCTGAAGGACCTCGTAAGACAAGCCCACGCAGTCTAGCTTTGGACTGCATCAAGAGGAAGAGCAGAGAGGTCACGGTCATCTGAAGAgctttacacaacacacacacactgaaaaaccAGTGACACAATCTGACGTAACCTGAGGGCTAACCTGCTGTTACCTACAAATCCTATTCACGCAGACACACCACTGAaccacactgataccattaatcTTCCACTACAGACTCGACTCACAAAAGGCTTCAAAGAACATTATAAACAACAATGAATGGAGTAACAAACAGAACATCTAAAATGATCACTGTGTGTTtggaacatttttatatatatttcagatcATTGTACGGGTTTAACAGatgcaaatgtttaaaaacttatTTCACACAATATTAGAtcactttactgtactgttCCTCCAAACAAACCTACAATAAAGTTCTATAGAAAGAACCAA

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22916 lncRNA upstream 52283 6948070 ~ 7049298 (+) True G16969
TU22914 lncRNA upstream 81349 7004126 ~ 7020232 (+) False G16969
TU22912 lncRNA upstream 174562 6926771 ~ 6927019 (+) True G16968
TU22749 lncRNA upstream 199670 6901222 ~ 6901911 (+) True G16845
TU22742 lncRNA upstream 301445 6689720 ~ 6800136 (+) True G16839
TU23037 lncRNA downstream 225486 7337431 ~ 7339982 (+) True G17062
TU23046 lncRNA downstream 239673 7351618 ~ 7355186 (+) True G17070
TU23167 lncRNA downstream 317063 7429008 ~ 7429319 (+) False LOC103032995
TU23172 lncRNA downstream 323956 7435901 ~ 7436615 (+) True G17180
TU23206 lncRNA downstream 520967 7632912 ~ 7658380 (+) True G17204
XM_007236503.3 mRNA upstream 100389 6991903 ~ 7001192 (+) False pdp1
XM_022679639.1 mRNA upstream 100389 6991952 ~ 7001192 (+) False pdp1
XM_015602247.2 mRNA upstream 100389 6991989 ~ 7001192 (+) True pdp1
XM_007236502.3 mRNA upstream 100389 6992005 ~ 7001192 (+) False pdp1
XM_007229462.3 mRNA upstream 179219 6918058 ~ 6922362 (+) False ino80c
XM_007236512.3 mRNA downstream 30423 7142368 ~ 7172757 (+) True esrp1
XM_007236513.3 mRNA downstream 30424 7142369 ~ 7172757 (+) False esrp1
XM_007236515.3 mRNA downstream 187726 7299671 ~ 7307085 (+) True LOC103022302
XM_007236519.3 mRNA downstream 199357 7311302 ~ 7323743 (+) True LOC103022811
XM_007236521.3 mRNA downstream 215393 7327338 ~ 7333674 (+) True LOC103023753
trnat-ugu_6 other upstream 433688 6667821 ~ 6667893 (+) True trnat-ugu_6
trnat-ugu_5 other upstream 442108 6659401 ~ 6659473 (+) True trnat-ugu_5
trnat-ugu_4 other upstream 444953 6656556 ~ 6656628 (+) True trnat-ugu_4
trnat-ugu_3 other upstream 446636 6654873 ~ 6654945 (+) True trnat-ugu_3
trnat-ugu_2 other upstream 447925 6653584 ~ 6653656 (+) True trnat-ugu_2
TU23483 other downstream 1563674 8675619 ~ 8716787 (+) True G17414
TU23546 other downstream 1804641 8916586 ~ 8921656 (+) True G17443
TU23528 other downstream 1806030 8917975 ~ 8921656 (+) False G17443
TU23538 other downstream 1820762 8932707 ~ 8950159 (+) False G17443
TU23933 other downstream 3169279 10281224 ~ 10281976 (+) True G17745

Expression Profile