RNA id: XM_022679694.1


Basic Information

Item Value
RNA id XM_022679694.1
length 4990
RNA type mRNA
GC content 0.47
exon number 28
gene id LOC103024076
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 7338760 ~ 7368562 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTAGTCCTGAGCTTCACTGAAGCTTCAGTTGGGTCACCGCCCACATCGGCTCGTCCTGCATTTGGTTATGGAGTACTAATGAAGACTTTGCATGATCAGCCATAACATAAGCGGCAGGTTGCAAATGAGGTGGAGGCAAGTGTAAGCCGTCCAGAAAGCCGGAAACAACGGAGGAGAGATGTTCCGTTGCCGTGTAAATCTTCTGGATGACACCCGCATTGAGCGGGACCTGGAGaAAAATGCAGTGGGCCAGGTGCTGTTTGATGAGGTTTGTGATCATCTCAACCTGCTGGAGAGGGGTTACTTTGGCCTGGCAACATTTGATGCCTCCAACAACAggGTGTGGCTGGACTTTTCTAGAGAAGTTCACAAGCAGATAATAGGTCATGATGCTACCTTCACCTTTAGTGTCAAGTTTTACCCACCTGATCCTTCACTACTGGCAGAGGACCTCACCAGatatttACTCTGTCAGCAGGTGAGAGCAGACATCATGACCAATCGTCTGCCCTGTCCGTCAGACATGCTGGCAGTGTTGGGGTCGTATATAGTGCAGTCTGAGTTGGGGGACTATGACCCCGCGTTGCACGTGCCGGGATACCTCCTGACCATCCCCCTCGCACCCAATCAGAGCCCAGAGCTGGAGGACAGCGTGACTGAGCTGCACCGCACATACCAATCGATGACTCCTGCTCAGGCAGATGAGAATTTTCTTCAGAATGCTATAACACTCCCCTTGTATGGAGTAGACCTGCATCCTGCTAAGgATTTGAGTGAAAGGGATGTGAAGCTGGGTGTGAGTGCTGATGGAGTGACAGTGTACGAGGGCAAGGCAACAACACATAGTTACTCCTGGCCAGAGGTGCTGAAGATTTCTTACATCCGCAACAAATTCCATTTAAGGATCCGCAACACACAGGATACCACTGAAAGTACCATCAGCTACATTCTGCCCAGCTACCGTGCCTGCAAACGCCTGTGGAAAGTTGCTGTGGAGCACCATGCCTTCTTTAGGAACCACCGTCCGGATAAGTATGAGGGAATTCTGCAGCTAGGATCCAGGTTCCGCTTTCGCAGAAACACTCATACCGAAACTATGGAGGTCAGCTCCAACATCAAACGCCCCGGTCCACCCGTCACCCACTCTGCCATCAAgaaaaaagCAAAGGAGGGCATGCTTCGTGCTTTGAAGAGCCCAACTCGAATCCTGCTTGACGATTGGTCCCAGGTGTTCAAGCTGGACCGTTCTCGGCCAACATCTGTCCCAGAGCCCACCTATACTTATCAAGAGCCCCCCGCACAAGCAGTTAAAAAGACTCATAGACACAAAGTGAcaactgaggaggaggaggatgatgaggacGAGGTGCCAGAGGAAGAACAGGAGTGGTTTCAGCTGCTGGGTGGACGTTCAGTACTCAAACAGGTCACTCTGTCTTCAGATACTGCAAAACTGGAACGTGCACACCCTCAGTTCTGGAAGCACAATTCTAATGACTGGCTGGTCCTTCTCTACCCCAAGCCTTCTGAATCCTCTCTTTGGGAACTGGAGACACCCTCTGAAGAGCGTGAAGAAAAGTATGAAAAGAAACAATGGGTGGAGAAAACCACAGAGGAGAGCATTAAGATTTTTAAAGTAACTAAAGCTGGTGAACTGCAGGAGTTTACTGAGGAGCAGCTGGAGGCAGAGGAGGACGGAGAGGGAGTACAGAGAGTCTTCACTAAACAACAGATCTCACAGCAAGTAGAAATGATTGAGGGGGAACCTGGAGAGGGTTTTGTTGAGAAAAGAGTAAGAAAGGTGGTGATAGTGGAGACAAGAAAGCAAGTGATGATAGAGGAGGAAGGTCTGAAGGCTCCTGGTGAAAAGATAAAaggattacagaaaaaaaatcaagaagtgGAGACTATTGAGAAGAGACTGCAGGATGTGGAGGATCTGAAAGTCAGACTACAGCAGGTAGAGATGCTGGAGAAGAAACTGGAGCAAGAACGACAGAACCATCTGCGAGATCAACGAGAAGCCTGGTTCGTCCTGCTGGACCGAAGACCATTAGTCTCAGAACTCATTGAGATAATTAAGCATGAAGAAGTCATTAAAAAGATGGAGGAGGAGCCAATACAAAAGGTCGCACCACTTCGGATCAGAGGTATCTGGCATATTCTGCTGGAACTGCTGCCAAGATCACAATGGGCCACCCATCTTCCACGAGCTCCTTCAGTGGAGGATCTCGTCGAGGAGCCTGTGTCCTATCAGGCAGTAGAGGAGAAGAGATGGCAGGAGGAGATGAAACTacgagaggagaggaggagatcGAGCCAGTATGTTTTCCCAGCTGAGAGAAAACCAGAGACCGACGAAAGAGACGACTGGTTCCACCTGCTGGATCCTTCTCCTAAAGAATCAATGCTTGCCAGAGTTATGGAACTTTACGTGGAGACCACAGAGGAGAAGGtcaggctggtggaggagcagATGAGTTTCATAAAGATGGAAATGCCTTTTGAATTGATCCAGAGGAGACCGGAGGACATGCAGGAGAGTGACCGCTGGTTTCTGCTTTTGGACCAAATACCTTTTGAAAAGAGGATTATTCTTACAGATCCTctggaaagaaagaagaaagaggaggaaGCACTGAGAATAAAAGAGCTACAGAGGAAAAGGCAGCtggagcagaagaagaagattgCTGAAGGAGgAGTTGTCAGTATGGATATTACAGTGATTGAAGAGAAGATAGATGAACAGAAGATCAGAGTGGAGGAAGTGAGGAAGGAACAGAAGCAAGTCATAATTCTGGAGAAGAAAGACATGCAGCTTCTACCAGAGAGAGAAGCAAAAATCCAGAGAGATTTTTATGATGACTGGTTTATTTTACTAGATAAATATCCTACAGTGGGTGAGCTTTATGAAGACACTGCAGGCCTGAGGATCCAGCAAAGAGTCTCCATAGTCTCTGAGCTGGTGAGCATCAGGGAAAGGATTGTGATCATCGACGAGAGGAGAGAAGTCGCAGATGAAGAAGTGGAGAAGGGTCCGGTTGTGCTGGTTgttgatgctaacagctggttTGTGCTTTTTGACAAAGATCTGTTAGCACAAAGGAGTGTTCCCGTAGAGGCTACAGACTCGTGGTATGATGAGGAGAAGATATTAAGAGAAATCAAGGAGAAGAGGCTTCAAGATGAGCAGAGGAGAAAACGTATGGCGGAGGAAAGATTTGCTCACATGGAGgtggaggaagaagaggagttTGAGATAGAGGAGGGTGATGAGTGGTTCATCCTCCTGCGAACATTAGCGGACAGGAAAGCCGAGGTGGAGAGACAAAGGAAACAGGAGGAGTGGGAGAAGCAAGTCATGGCAGAGCAAAGGAGAAAAGCATCAATAATACAAGATCGTATGGTTCTAGCTCAGAGAGATGTGAAGGACGAGTGGTACCTAATTTGGGAACTTTCTTACCTAGTCTCAGAGCGTGAACTTCCTCCCTCCATCTCCGTTCCAGTGGTTGTGCCTAAATCCCGCCCAGAGCCTAAACCCCGCCCAGAGCCTAAACCCCGCCCAGAGCTTAAACCCCGCCCAGAGCCTAAACCCCGCCCAGAGATTAAACCCCGCCCAGAGATTAAACCCCGCCCGGAGATTAAACCCCGCCCAGAGATTAAACCCCGTCCAGAGTTTAAACCAAGTCCAGAGCCTACACCTCGTCCTGAGTTTAAACCCCGTCTAGTGCTTCCAGCTGATCGTCCGATGACCTCCACTCCCACAACACAGCCTGCCCCCTTCACCAGACCCTCGTTTCAGGACGAGACACTGAGGAGCCTGGATGAGACACAGGAGACTGAGATGGAATCAGAGTCAAGCCTAATTATACAGAGAATGATAAAGAGAATGCAGAATGAAAGCATTTATGTCCGCCACAGTAAGCGAATGTTGGAGGGCAGTGATATAACTCATCAGGTGGTGCTAAAGCAGCATGCCAGCACCAGTCAGCTGAAGCGTGTGTATATGGAGGATATGCCGGAGTTTGGTCCCACTGACTGGGAGAAGCGCCTCTCCACTCACAGCCCCGTCCGCATCCCCCAGACAACCAGTGACCCAGTCCTTATTAGCATGGACACACtggaagagacagagacagtcaTCATCAGACAGGTGGAAAGAAGATGGTATGACAACCGTCACTGAAACCTCTTTTATCTCATCAAAGCATTAATCTGAGATGCACTGCAATTACTGCTTTTGTACCACaataatttttgcttttttttaatagcgTATATTTAAGAGCCAAAATTTAATACCAGTCTACAAAGAGTTGTTTAGAAGTTTACATATTTCTTCATTGACATGAATGTGTTTAGTTTTCATTTGTGCAGAATAAGTtacaaaatacagattttaaaaacactttagaCAAGTGTAAGGTGAGGGATTTAACAACAAGAACTCTGtaccatctgttaagcatgggggtgggagCATCATGCTCTGTGGCTGGTTAGCTACCAGTAGAACTGACACATCTCACTCAGTGGACGGAATAGTAAAGAAGGAGGTTTAGCTCAGAATTCTTCAGCATCACCTCAAACCATCAGCTAGATAGTTGAAACCTGAACACAGCTGAGTTTTCCTTCAGGGCAGCTACAAACATATCAAAATGGTTGTGGAATACATGAAACAAGCCAGCATTGCGCTTTTGGAATGGTGCTAAACTTCACAACTCACAAATATGTGGCTTAAGCTTAAAAGTCAGGTCCGTGccagaaaaccatcacattgaACTAAACTTTAGCAGTTCTACCAGGATTATCAAATATCGAACTGTAATTGTACCAAAAGCTTGTTAATAGCTACCAATAGTGTCTGGTCAAGGTGCAATTCAAATATttcatgtataaatatttttcgACTCTGTgtgttcaattcaatttaattcaaatgtatttatatattgctttttacaacaaaagttgtcataaagcagct

Function

GO:

id name namespace
GO:0030218 erythrocyte differentiation biological_process
GO:0035162 embryonic hemopoiesis biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0019897 extrinsic component of plasma membrane cellular_component
GO:0005516 calmodulin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23132 lncRNA downstream 16452 7321499 ~ 7322308 (-) True G17144
TU23109 lncRNA downstream 128016 7206012 ~ 7210744 (-) True G17123
TU23107 lncRNA downstream 150905 7186865 ~ 7187855 (-) True G17122
TU23106 lncRNA downstream 151959 7186193 ~ 7186801 (-) True G17121
TU23102 lncRNA downstream 182858 7148577 ~ 7155902 (-) True G17117
TU23120 lncRNA upstream 1806 7370368 ~ 7372488 (-) True G17134
TU23173 lncRNA upstream 67814 7436376 ~ 7436620 (-) True G17181
TU23182 lncRNA upstream 142075 7510637 ~ 7511086 (-) True G17187
TU23258 lncRNA upstream 239392 7607954 ~ 7691689 (-) False G17237
TU23260 lncRNA upstream 274829 7643391 ~ 7691689 (-) True G17237
XM_007236514.3 mRNA downstream 53030 7239009 ~ 7285730 (-) True ptpn3
XM_022679674.1 mRNA downstream 102358 7179416 ~ 7236402 (-) False LOC103025538
XM_022679678.1 mRNA downstream 102359 7179416 ~ 7236401 (-) False LOC103025538
XM_022679669.1 mRNA downstream 102359 7179416 ~ 7236401 (-) True LOC103025538
XM_007236510.3 mRNA downstream 199634 7112050 ~ 7139126 (-) True virma
XM_007236524.3 mRNA upstream 5295 7373857 ~ 7379214 (-) True LOC103024588
XM_007232433.3 mRNA upstream 465683 7834245 ~ 7839474 (-) True mrpl17
XM_022679800.1 mRNA upstream 491462 7860024 ~ 7872013 (-) True LOC103033961
XM_022679805.1 mRNA upstream 491747 7860309 ~ 7872012 (-) False LOC103033961
XM_022679797.1 mRNA upstream 491747 7860309 ~ 7870612 (-) False LOC103033961
trnat-ugu_80 other downstream 349949 6988739 ~ 6988811 (-) True trnat-ugu_80
trnat-ugu_79 other downstream 350501 6988187 ~ 6988259 (-) True trnat-ugu_79
trnat-ugu_78 other downstream 351053 6987635 ~ 6987707 (-) True trnat-ugu_78
trnat-ugu_77 other downstream 351605 6987083 ~ 6987155 (-) True trnat-ugu_77
trnat-ugu_76 other downstream 352157 6986531 ~ 6986603 (-) True trnat-ugu_76
TU23350 other upstream 560727 7929289 ~ 8007239 (-) False LOC103026934
TU23805 other upstream 2193865 9562427 ~ 9562725 (-) True G17638
TU24000 other upstream 2878113 10246675 ~ 10247318 (-) True G17792
TU24180 other upstream 3647467 11016029 ~ 11080151 (-) False LOC103047439
TU24181 other upstream 3647467 11016029 ~ 11080151 (-) False LOC103047439

Expression Profile