RNA id: XM_022680017.1


Basic Information

Item Value
RNA id XM_022680017.1
length 2038
RNA type mRNA
GC content 0.47
exon number 7
gene id LOC103031465
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 8834542 ~ 8842882 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCTTTCAATGACCACAATGACTTACCTGACTTTAATGAGAAGGATGGCATTATAAAGAACTGAAATTGAGCTTTTATACCAACTGGAACTGTGATCTTATATACTGGAATAAGACCATATGGAATCAGCGTGTATGCTTTTTATGATTGATCTGATCTATGGCTGGACTTTGTACTGTACTACGATTTTTACAAGCTGAGATAAGCCATGTCCTCCTCAAGTTCCAGACTATCTGAGGACCTGTTCCAGTGCTCAGTGTGTCTGGATGTTTTCACCCAGCCTGTCTCTCTCCCCTGTGGACACACATTCTGCATCTCCTGCATCCAAACCCAATGGATGACGACCGGCTACCCTCACTGCCCCAAATGCTCAGCAGTGTTTAGCGTTGCTCCAGAGCTCTGTGAGAATGCCTTTGCTGAGGAGATGGTCAGGAAGATACGGGAACAGAGAGGTAAGGAAACAGTAGAAGACCACGGCACCCGAGTGGCAGTGTGTGACCTGTGCCCGGCTGGGAAGCAGCTACGTGCTGTGAAGTCCTGCTTGGTGTGTTTGGTGTCATACTGTGAGCAGCATGTGGCTTCTCATGCAGCACGATTTACCAAGCACACTCTGGTGCAGGCAGGGCACCCTCTGGAGGACAGGATGTGCAAGAAACACGAAAGACCTTTGGAACTCTTCTGCAGATATGAccagacctgtgtgtgtgtgctgtgcacAGATACAGACCATAAATCCCATCATGCCGTACCGGTGGAGAGGGAGTGGGCAGAGAGGAAGaCCAAGCTGTTGAAATCCCAGTCTGATATCCAGCAGATGATCCGTGAGAGGCTGAAAAAGACCAGCGAGATCAAGCAGTCAATCCAACTAAGCAGAgaacacacaaacagagagattGCAGATAGTATGGAGGTCTTCACTGGTCTGGTGCGATACATTGAAAGGAGTCAGGCTGAGCTGCAGAAGTTGATGGAGGAGAAGCAGAAAGCAGCAGAGAGACAAGCTCAAGAGCTTATTAAAGAGCTGGAGATGGAGGTTACTAAACTGAAGGGTAAAGATTCAGAGCTGGAACAACTCATTAACTCTGAGGACTACCTTCATCTCCTACAGGTATGTCCATCTGTGAGTCCTGACCCTCGCACTAAAGACTGGAGCCACACAAGAGTTAGCACCATGCATTGCTTGGGCCTGCTGAGAAGAGCTGCCACTCGCATAGAAGAACTAATGAGGATTCAGATACATAAAATTACAAACAGAGaACTGGAGGCAGTGTCCCAGTATGCAGTGGATCTGACCCTTGACCCAAGCACAGCAAACCCTTGGCTGGTGGTGTCCACAGATGGGAAACGCGTGAAAGATGGGAATGTGCAGCAGGATGTTCCAGATAATCCCAGGCGTTTCGATACAGCCCCATGTGTGCTGGCACAAGAAACAATGTACAGGTGGAGGACCTACTGGGAAGTGGAGGTGGCCGATAAAACATCTTGGGATCTGGGCGTGGCCAGACAGTCAGTCAATAGAAAGGGTCTGGTCACACTGAGCCCAAAGGATGGCTACTGGGCAATCTGCTTGAGAAGGGGAAGGGAGTATAGAGCATGTGATGGTGAATCAGTGCTGCTCTCTCTGCGCAGTCAGCCGCAAAAGATTGGCATATATGTGAGTTATGAAGATGGACAGGTTTCATTTTATGACCCGATATCTCGAGTTCATATCTTCTCCTTCACTGGGCAGCGATTTACTGAGCCTTTACTGGCCTTCTTCAACCCTGACACGAATGACAGTGCTCCACTCATCATAAGGCCTGTCAGGTGTCAGGACCGAAAGCCATATGATGGTGTAACAATATGAAGCCgaactgcttttttttgtgatccaatcagaaaaaaaatgagtagACAAATTGCTGATCTAATCTATTCATAACTACAGTGTTCAGTATTGATTCATACAAAACTGTTTCCCAAAAAATCTggcagatttttattttgacaattaGCACCACTAAcgattgtaaaaataaattatattgaacgacaaacta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23508 lncRNA upstream 60882 8771847 ~ 8773763 (+) True G17433
TU23490 lncRNA upstream 85011 8746869 ~ 8749634 (+) True G17421
TU23493 lncRNA upstream 85011 8746869 ~ 8749634 (+) False G17421
TU23495 lncRNA upstream 85011 8746869 ~ 8749634 (+) False G17421
XR_002651305.1 lncRNA upstream 117848 8715728 ~ 8716797 (+) True LOC111194833
TU23519 lncRNA downstream 30050 8872932 ~ 8877126 (+) False G17442
TU23524 lncRNA downstream 30050 8872932 ~ 8877126 (+) False G17442
TU23525 lncRNA downstream 30050 8872932 ~ 8874443 (+) True G17442
TU23526 lncRNA downstream 31114 8873996 ~ 8877126 (+) False G17442
TU23552 lncRNA downstream 53083 8895965 ~ 8898289 (+) False LOC111191971
XM_007239766.3 mRNA upstream 23152 8782431 ~ 8811493 (+) True LOC103029568
XM_022667585.1 mRNA upstream 96379 8733715 ~ 8738266 (+) True LOC111191756
XM_015601688.2 mRNA upstream 123351 8703321 ~ 8711294 (+) True LOC103039953
XM_022679959.1 mRNA upstream 144800 8675628 ~ 8689845 (+) True LOC103037430
XM_007239768.3 mRNA downstream 1616 8844498 ~ 8868718 (+) True LOC103030220
XM_022680035.1 mRNA downstream 1616 8844498 ~ 8868718 (+) False LOC103030220
XM_022680040.1 mRNA downstream 1616 8844498 ~ 8868718 (+) False LOC103030220
XM_007239769.3 mRNA downstream 36703 8879585 ~ 8889395 (+) True LOC103030535
XM_022668253.1 mRNA downstream 48362 8891244 ~ 8899645 (+) True LOC111191971
TU23483 other upstream 117858 8675619 ~ 8716787 (+) True G17414
trnat-ugu_6 other upstream 2166752 6667821 ~ 6667893 (+) True trnat-ugu_6
trnat-ugu_5 other upstream 2175172 6659401 ~ 6659473 (+) True trnat-ugu_5
trnat-ugu_4 other upstream 2178017 6656556 ~ 6656628 (+) True trnat-ugu_4
trnat-ugu_3 other upstream 2179700 6654873 ~ 6654945 (+) True trnat-ugu_3
TU23546 other downstream 73704 8916586 ~ 8921656 (+) True G17443
TU23528 other downstream 75093 8917975 ~ 8921656 (+) False G17443
TU23538 other downstream 89825 8932707 ~ 8950159 (+) False G17443
TU23933 other downstream 1438342 10281224 ~ 10281976 (+) True G17745
TU24160 other downstream 2335026 11177908 ~ 11190080 (+) True G17904

Expression Profile