RNA id: XM_022680109.1


Basic Information

Item Value
RNA id XM_022680109.1
length 2503
RNA type mRNA
GC content 0.50
exon number 7
gene id bmp6
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 9009246 ~ 9068931 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTCTGCTTCTATGCCCAGTTCTCCCAGTGTGACAGGCTTCGGCGTGGACAGCTCATGTGGAAGCTCTTCTATGAGGACTCGGACTGAAGTAAAGTccacttctgtggcacgaactTATGGGAATACCAGTGTCTTGTCTTTCTGAGAACTAAAGCGTGCGCCTTCCGACGTTtcgtgttttgtttttggtgttTTCCCTTTGAGACAAACCATTACGTGGAATTAATGGAGATTTTCCTAAACAAACCATCTTATGCTTTGAAGCGCGTCCCCGATGATCTGGTACGGGACACTGTCTCTGATGGCGTGACTTCTGTTGCTTCCGCGAGCCCGTTTTATCCTAGAGGACGGTACAATCGTGCGCCTCAGTAGTGTCTACACTTGCGCGCGCTCCGTGTCCACAGGATTTGTACCATTTTTGTCGTagttgtttattgtttgttgtgtaagtttttttttttttttggaaagtccACAACTGCATCATCCTCCCAACAAACTGGATCTAAGATGAGAAGCCACCGCTTTGCTCTGGCGGGCTTATGGTGGTGCTCTTATTGCATGTTCCTCGTGCATGCTGGTAGCGCTCATTTATTCGACAGCAACAACGAGCTTCACCCGCACCGGCGGCTGCGCACGCACGAGAAGCGAGAGATGCAGAAGGAGATCCTCTCCATCCTCGGGCTGCCGCACAGACCCAGACCTCACCCGCTCAACGGCAAGTACAACTCAGCGCCGCTTTTCATGCTGGACCTGTACAACACCATGAACACCGAGGAGAGGAACGAAGTGGACGGGATCCTGGACCAGTACAAGTCCATGTTCACCACGCAAGGACCTCCTTTAGCCACTTTTCAAGACAATGCCTACTTGAATGACGCCGACATGGTGATGAGCTTTGTCAATCTGGTGGAGTTTGAGCGGGAGTTGTCTCCGCACAGAAGACACCATAAAGAGTTCAAGTTCAACTTGTCTCAGATCCCAGAGGGAGAGGCAGTTACAGCAGCAGAGTTCAGGATCTACAAGGAATGTGTGAGCAGCACTTTCCGCAACGAGACCTTCCTGCTCAGTGTCTTCCAGGTGGTGGGAGAACATCCAGACAGAGAAGCAGATCTGTTTCTGTTGGAGTCCCGCCAGCTGTGGGCAGCAGAGGAAGGCTGGCTGGAGTTTGACATCACAGCCACCAGTAACCTGTGGGTAATGAGCCCCCATCACAACCTGGGTCTGCAGATCAGTGTAGAGACCAGCAGTGGGCAGAACATTAACCCCAGAGAAGCCGGGCTAGTGGGCCGGGATGGAGCTCTGGAGCGGCAGCCATTCATGGTAGCCTTCTTCAAGGTGAGCGAGGTCCATGTTCGCACGGCACGCTCCCCAGAAAAAAGGCAGAAAAGCAGGCAGCAGAACCGCAGCCGCTCAAATCATCCACAGGAGGCACCCAGGGGCCCCGGACACACAGATTACAACAGCAGTGATCAGAAGACGGCATGCAGAAAGCATGAACTATATGTTAGCTTCAGAGAGCTGGGCTGGCAGGACTGGATCATTGCACCTGAAGGCTACGCTGCCAACTACTGTGATGGCGAATGCTCCTTTCCACTGAATGCTCACATGAACGCCACCAACCACGCTATTGTACAGACACTGGTCCACCTGATGAATCCTGAGAACGTCCCGAAGCCTTGCTGTGCCCCCACCAAGCTGCACGCCATCTCTGTGCTCTATTTCGACGACAACTCCAACGTCATCCTGAAGAAGTATAAGAACATGGTGGTGCGTGCCTGCGGCTGCCACTGACCTCCAGGACGTCACGCTAGCTTACCCCCTCTTTACCCCCTgcccagcggctgcagctcggtgtgtgtgtgtgtgtgtgtgtgtgggacgtGTGAGACAGAGGacggagagagagtgtgtgtgtggtgtgtgtgtgtgtgtattaaagaAAGGTTTGTAGTGTGAAAGTTCAAATTCTAGTATAGATATATTGAGTGGATGGGTGTTTGTGTAggtatgtgtgtgcgtatgcATTATCCCTCTCTTCGACCTGGCTGTACTGGATGTGGGATTATTAAGGACTGTGTGAGGAATGTGCTGCTTTCCCCCCCTCTTTCCTGTTCACACACAGTCAGTTCTCGTGTACCGGTTCCTAATCCTGCTAAGTCCGGAAAGTATGTACAGCCACATCTGAACACAGAGCCAGTGCCTTAACCAGTGAACTGTCACTGAAAACCTATTATCCAAGATCCATTCTATATTTTATAAAggtatttattctgtatttgaCTAACCAaagcttgatttttttattttaacatctcAGACTGTCGAAACCTAATCATGCCCTGATACAGCCACATCATAGCACAGAAATGGagatctatttttattttcccagTTTTTATACAGTTGCTGTATGCTGTACTGCCGTCCAAAAATACAACAGCTGAACCTGGTTGAACTCTTTTAGGGGTCTTAATAAAACAGcttatttttattctctcaA

Function

GO:

id name namespace
GO:0040007 growth biological_process
GO:0005576 extracellular region cellular_component
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K16620 BMP6; bone morphogenetic protein 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651316.1 lncRNA upstream 77486 8928692 ~ 8931760 (+) True LOC111194870
TU23560 lncRNA upstream 105304 8899940 ~ 8903942 (+) False LOC111191978
TU23552 lncRNA upstream 110957 8895965 ~ 8898289 (+) False LOC111191971
TU23526 lncRNA upstream 132120 8873996 ~ 8877126 (+) False G17442
TU23525 lncRNA upstream 134803 8872932 ~ 8874443 (+) True G17442
TU23578 lncRNA downstream 4563 9073494 ~ 9074499 (+) True LOC111194882
XR_002651329.1 lncRNA downstream 4637 9073568 ~ 9074488 (+) False LOC111194882
TU23581 lncRNA downstream 13157 9082088 ~ 9084442 (+) True G17474
TU23608 lncRNA downstream 134458 9203389 ~ 9215506 (+) True G17496
TU23799 lncRNA downstream 413471 9482402 ~ 9482708 (+) True G17632
XM_022680101.1 mRNA upstream 3416 8981004 ~ 9005830 (+) False LOC103046631
XM_022680095.1 mRNA upstream 3416 8981006 ~ 9005830 (+) True LOC103046631
XM_007260048.3 mRNA upstream 3416 8989018 ~ 9005830 (+) False LOC103046631
XM_022680097.1 mRNA upstream 22373 8981063 ~ 8986873 (+) False LOC103046631
XM_022680087.1 mRNA upstream 22373 8981068 ~ 8986873 (+) False LOC103046631
XM_007260060.3 mRNA downstream 50473 9119404 ~ 9132136 (+) False tfap2a
XM_007260059.3 mRNA downstream 52409 9121340 ~ 9132136 (+) False tfap2a
XM_007260061.3 mRNA downstream 54022 9122953 ~ 9132136 (+) True tfap2a
XM_007260058.3 mRNA downstream 54740 9123671 ~ 9132136 (+) False tfap2a
XM_022680169.1 mRNA downstream 242859 9311790 ~ 9482091 (+) True LOC103030214
TU23538 other upstream 59087 8932707 ~ 8950159 (+) False G17443
TU23546 other upstream 87590 8916586 ~ 8921656 (+) True G17443
TU23528 other upstream 87590 8917975 ~ 8921656 (+) False G17443
TU23483 other upstream 292459 8675619 ~ 8716787 (+) True G17414
trnat-ugu_6 other upstream 2341353 6667821 ~ 6667893 (+) True trnat-ugu_6
TU23933 other downstream 1212293 10281224 ~ 10281976 (+) True G17745
TU24160 other downstream 2108977 11177908 ~ 11190080 (+) True G17904
XR_002651390.1 other downstream 2786675 11855606 ~ 11855851 (+) True LOC111194942
trnam-cau_3 other downstream 3222339 12291270 ~ 12291342 (+) True trnam-cau_3
TU24769 other downstream 3898632 12967563 ~ 12975106 (+) True G18332

Expression Profile