RNA id: XM_022680116.1


Basic Information

Item Value
RNA id XM_022680116.1
length 2170
RNA type mRNA
GC content 0.42
exon number 9
gene id txndc5
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 9071382 ~ 9084286 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTGCTTTGTCTTGTACAGGTGTGGTCATTGCCAGAGGCTACAGGGAACATGGAATGAGCTGGCAGACAAATACAACAGTATGGAGACTCCTCCCATCTATGTTGTAAAAGTAGATTGCACTAAGGACACCAAGTTTTGCTCCAGTGACCATGGGATCCGTGGATATCCTACtCTGAAGCTGTTTAAACCTGAGCAGGAGGCAGTGAAATATCAGGGTTCAAGGGACCTGCAGTCACTGGAGACCTGGATGCTGAAAACTCTACAGGAGGAGCCTGAGGAGCCTGAAAGTGAGCCCGAGCCCCCCAAAGTGCCTGAGCCCAAGCATGGCATGTACGAGCTTACTGCTGGCAACTTTAAATCACATATTTCCAAAGGATCTCACTTTGTGAAGTTCTTTGCGCCGTGGTGCGGACACTGCAAAGCTATGGCTCCAACATGGGAGCAGCTGGCTACCAGCTTTGAACACTCAGATTTGGTCAAAATTGGCAAGCTGGACTGCACTCAGCATTATGAAGTCTGTTCAGAGAACCAGGTTCGAGGATACCCCACACTGCTCTTCTTCACTGACGGAGAGAAGgtgGATCAGTTCAGGGGAAAACGTGATCTGGAGTCTTTTAAGGAATTTGTGGATAATCACTTGGCTGATGCAGCTTCCAAAGACCAACCTGCTGCAGAGGATGCAAAAGCCAATGAAATCCCAGAGGCTGAGGAGCCTGCTAAACCAGAGTCCAGCGTTGTCACCCTCACTGAGAGCAACTTCGATGACATTGTTGCCAAAGGCGTCTCCTTCATTAAGTTTTATGCTCCATGgtgtggacactgtaagaacCTGGCTCCTACATGGGAGGACCTGTCAAAGAAGGAGTTTCCTGGCTTGACGGACGTGAAGATTGCTAAAGTGGACTGCACTGTTGAGAGATCGCTCTGCAACAGATTCTCAGTGCAGGGATACCCGACGCTGCTGATATTCCGCGCTGGTAAGCAGGGAGAGGAGCACAACGGTGGCCGGGACTTGGAGAGCCTGCACAGCTTCGTCATGAAGCAGGCCAGAGATGAGCTGTAGTTTTGAGCCACATCCACCTTCATTACACTCTGTCCCCTGCTCTGATGTCTCTCTGATCTTTTCCCCTGTGTTTTTCCTCAGCAATGTGCGCATGTGTCTCCATCTATGTAAACTCTCGCCAAAAGTCTAGAGTGAGGGCAATCACTGAGATTTATCTATATGTAAAATGTGAATGTAGGTGATTGCAGTAAAGTCCTTTACCACCTATGGACCAATGAGAGGAAATGGTACCTAATGACTGACAACCACTTTTCCAGTTATAAaaatgttcatatatatatatttttctttcctttatttgttttgtttttctgtctgtcaaCACAGTATGTCAGTGTCTATTATAGTCTTTTCTTTTtgaacatgttataaacacagaaatagaGATTATTGCACCATGTATGAGTGGAGAAATTTTATAACAAGGAATTATCCGATGCTTTTTAAGGCCAACGGTTTGGCCATCATGTTTACAGTGCCCGGAAAGACAGCCCggtttatttttgctgtaaaaAGAGAATCATGTGACTTGGCTCTCAgggagaacatttttttaaatatataaagttaaaATCATATGTTCCTCCTTTCTGCCTTTTCTCGTCTTCTCCTACACCACCACCTCAACCCTCTGTTTAAAATCTGTTGGACTCTGTATGAGAGAACTGCACTTtttttgtgtgcgtgtgcatgtgtgtacgtttcagtgtgtttttgcatcGTAAGCAATCATTTTCCACCAGTTTCACACATTTACACTTTGGGGCCTGTAGCacttaatattgtaataattgtTCATTAAAGTAATAATCCCAGAAATATAACAAATGAAACCATGCAAAAAGTAATACAACGGAATATTGGAATAATGTGCCTAattatgttttacagtgtattgaagattatacatttttcagtttgaccgttattcaattttttttcatttgtgggTTTTATACAATtagtgttaaaatataaaatatttgggATTATTACTTTACAGTGGGTTGAGGTTCCTGGGAGTCCTCtattgggataaaaaaaaacatctttttcaaATGAAATTTCACAATAAGCATGTACTCTCTATTTGAAATAGGttgattt

Function

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process
GO:0006662 glycerol ether metabolic process biological_process
GO:0015035 protein disulfide oxidoreductase activity molecular_function
GO:0016853 isomerase activity molecular_function

KEGG:

id description
K13984 TXNDC5, ERP46; thioredoxin domain-containing protein 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23747 lncRNA downstream 85728 8984361 ~ 8985654 (-) True G17585
TU23708 lncRNA downstream 110542 8947833 ~ 8960840 (-) False G17558
TU23712 lncRNA downstream 110542 8957043 ~ 8960840 (-) False G17558
TU23705 lncRNA downstream 110542 8958680 ~ 8960840 (-) True G17558
TU23709 lncRNA downstream 157179 8911970 ~ 8914203 (-) False G17558
TU23766 lncRNA upstream 20278 9104564 ~ 9108428 (-) True G17599
TU23807 lncRNA upstream 478765 9563051 ~ 9563268 (-) True G17640
TU23813 lncRNA upstream 518501 9602787 ~ 9603419 (-) True G17646
TU23815 lncRNA upstream 520630 9604916 ~ 9605232 (-) True G17648
TU23829 lncRNA upstream 729425 9813711 ~ 9814683 (-) True G17661
XM_022680081.1 mRNA downstream 91764 8975458 ~ 8979618 (-) False LOC103047134
XM_022680076.1 mRNA downstream 91764 8975458 ~ 8979618 (-) False LOC103047134
XM_022680071.1 mRNA downstream 91765 8975458 ~ 8979617 (-) False LOC103047134
XM_007260049.3 mRNA downstream 92305 8975458 ~ 8979077 (-) True LOC103047134
XM_022680048.1 mRNA downstream 194257 8873882 ~ 8877125 (-) True LOC103030846
XM_022680125.1 mRNA upstream 24728 9109014 ~ 9113905 (-) True bloc1s5
XM_022680199.1 mRNA upstream 910859 9995145 ~ 10009151 (-) True mak
XM_022680201.1 mRNA upstream 910859 9995145 ~ 10009151 (-) False mak
XM_022680205.1 mRNA upstream 910859 9995145 ~ 10009148 (-) False mak
XM_022680213.1 mRNA upstream 910859 9995145 ~ 10009144 (-) False mak
TU23350 other downstream 1064143 7929289 ~ 8007239 (-) False LOC103026934
trnat-ugu_80 other downstream 2082571 6988739 ~ 6988811 (-) True trnat-ugu_80
trnat-ugu_79 other downstream 2083123 6988187 ~ 6988259 (-) True trnat-ugu_79
trnat-ugu_78 other downstream 2083675 6987635 ~ 6987707 (-) True trnat-ugu_78
trnat-ugu_77 other downstream 2084227 6987083 ~ 6987155 (-) True trnat-ugu_77
TU23805 other upstream 478141 9562427 ~ 9562725 (-) True G17638
TU24000 other upstream 1162389 10246675 ~ 10247318 (-) True G17792
TU24180 other upstream 1931743 11016029 ~ 11080151 (-) False LOC103047439
TU24181 other upstream 1931743 11016029 ~ 11080151 (-) False LOC103047439
TU24200 other upstream 1991952 11076238 ~ 11083799 (-) True LOC107197924

Expression Profile