RNA id: XM_022680172.1


Basic Information

Item Value
RNA id XM_022680172.1
length 3545
RNA type mRNA
GC content 0.54
exon number 23
gene id LOC103030214
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 9311790 ~ 9482091 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGTGGCCTGCTGGAGGACAATTAACGAGATACTGAGTTTGACAACAGACAAgccctaaaataaaaagGTGGACGGCAAACGGATGTCGAGCAAACATTTAGCTTAGCACAATAGATCGATAAGAGGATATCCATGAAGGGGGACAACAAAAAAGGAGCATCCAGGAACCAGGATCAGAAGTTTGACTGAAGCGGAATGTTAAGGACATTGAATGAGGAAGACATAATGACCACTGGTCCCGCAGGTCAGTGGTCTCGGTGAAGAGATCTCACACTCTGAAACAATGGACAGATTTGGCAGTTTGGAGCAGAAGGCTCTGAAGCAACCTAAGCAGAAGAAATCGAAGTCGGCTGAATTTCTGATGGAAAGGGAGGAGCAGGAAGAGGAaaacagggagaggagagtgATGAAGGGCATTGTAAATCCCGGGTTCCTgagcagagaggaggaggaggaggagaaggatgaGGCTGAGGAGCGcagtggtggaggtggtggtggtgggcagAGGAAGGAGGAGGGGAGAGAAATAGGAGGTGACAGGCAGGATAGCACCCTCGCCGCTCACCAACAACAAACGGAGCTGGAAGCCCCTGCCAATGCAAGAGGAAATGAAGGTGCCCGAAATTACTTTGACCCTTCGGCGGCGGCGCAGGGTGACCCAAGGCGGTGCAGGACGGCCGGGGTCGGAGCGGGAGATGAGCTGGAATTAAAATTCATGCACGAGGATGAGCGTGGTTTGTATGAGAAGCTGTCAAAGATGCTAAATGAAGATGATGCTTCAACCGTCATAGACTTGCCTGgcTGTGTAGTGGAGGAGAGGACAGTGGCTGGAGCTCCCAAGCTCCCCCTGGCTGAATGGAGGGATCGGTTGCGGGAGcagctggtggagaggagagaagaggttATCCCCCAGTATGTGGAACAGCTGAGAAAACGAGTACAGGATGACATGATCCCAGTGGGCAGGCCTTCCCTGGAACAGGATGAACGAGTAGAGCGAGGGATGAGGGAGGCGAGGAAACAGAGAGTGATGGCTGTCCTAAGAGGGAACACAAAGGCGTCCTCTCCCGTCGGTCATGTAGATCCGGAGGAGGCTGTTTTGCAAGAGCGGCTCTACTCTGCGTTCCAGCGggcAGAAAGACGCTTGCTGAATTCTCTGCATCGACGTCAGGCTGAAGTCATCGCCCAATATGGAGAAATCACTGAAGTCACGGTCAACAGTGAACCACTGGCCATCGAATCTGACCTCTCCTGGcaggTGGAGTGGGTGCGGACCCCTCGGCCGGTGGAGGTGCGTGTGGTGTGTTTGCGTGGGGTAAGAGAGAAGCTCTGCAGTGGTTTGTACAGTGTGAGCGTGTCCCTGCACAGTCGGCTGGGCGGCCCCGCGCTGCACTGGACCCAGCTGAAAGGGCAGCAGTGGAGCAGTACCACAGAACCTGTAGAGCACAAGGGCCGATTCTGCGACATCGACCTGCAGCTCAACCAGTCTGTCTGTGTGaCCTTACCTGCATCCTGTTACCTCCTGCCTTCCACAGTTTTGGTGTTCAGGCTATTGAGCATGTCCAGTGAGCAGAGTCCTGTAAGCGGTGTGGTGGCCTGGGGGGCGTTCCCAGTGTGTGACTGCTCTCTCACCCTCATCCAGGGCAGTTTCCGCACCCCTCTGCTCTGGGGTCGCCCCAACCCAGGTCTGGACCAATTCAGAAAAATGGAGCAGCTGCTGTCCGCTGACCTGGACAACTGGCTCTGCAACCTGTACTTCCAGGTGAGGATACTCCCGCGAGGTGTCCCACTGGTTCTGGAGTGCACTGTCCCCCCGCAGATTCCCCCTGGTCTCCAGCCGAGTTCCAGTGAAGGGACCCCTCCTGATGTGGCCGCCTCCGCCTGTTCCTCGTCTTCCCTGCCAGATAAATGTCCTCCTGTTAGAGCCCTCCCCGTTCCAGAGCCATCGTCAGATCAAGCCAAGCCTGGGTCACATGTCAAGGGCGGTAAACAGAGGGAGCCAATCAGCAAGATAACCAGCCCGAGTggctgcgagagagagagagagatagggacgAGCCTCACCGCAGAGCAGCTCCAGCACTTCTCCTTCTCCACACAGTCTGAGCGAGGTGCTCTGTGCGGGGCTGTGTGTTGTGGTCCGGCCGCACGTTTACGGATGGTGAGGCGCTTGCTCCCAGGAGAACTTGGCCTGTCCTGCTGTCCCCGGCCTCACTTCAGACAGCTCGCTCTCCTCCTCGTCCTGGTCATCCTCACCTGGTTTCCCCGCCTCTACCTGCACTACTGCAGCCAGTGGCTCTACCTCCACACTCGCAACATACCTGTCAACAGATTCCAGTTCCATGCCCACACAGTGGATCTGGTGTATCAGAGCTCTCTGCTGCGCACCCTGGAGGAGacgctgctggtgctgctggggCCCTTGACCTTGAACGCAGCTACGTTTTTGCTGCTTCTGATCAGATGGGTCTGTCAGCTAGCGTTTGGCTCAACGCCCTCCTTCCTGTCAAAGCTGATCATGGCTGTGGGAGCGTGGACAGTGCTGGACCCCTTGGCGGTCTTTGCTGTGGACGCGGTCCTGGGGCGTCTGTCCTACAGTGCAGAAACTCCAGTGGCTGATGCTGCCAAGCTTTACTGGCACTTCCATCGAACAGAACAGTCGGGTACAGTGGGCATCATCATCACACTCTTCCTCTACACAGTTCTATTCATCCTGTCCTTCACCGTGCTGTATGTGTACTTCTTCAGACTCCATAATGACGGCAGAATGCTCGATGTGTACCATCGCCTACACAGTCCAGAGGGAGTGTTTTTCATTCCACACGACCTGGAAGTGTCCAATCAGGAGCTCAGTTACATCGTAAAGAAGGCGGAGCAGTGGAGAGGCTTCAACGGAGAGAGGCGGAAGGTGGCAGTGTATGACTACATCTGGACTGAGGAGGAGCCTGCAGGGTCCGAATCCCCCGGGGGTCCGCCCAACGCAGCAGGAGAGGCCAGCACCCACGTGTCTGTCTACACCCTGTACCTGAGTGGCCTTCGTCGCCGCTACAGACACTTCCTCAGGCAGCCCAATGGAGCTATTGCAGAGGTGATCGGGGACTTGGACAGTGTGGAGGCTCAGCAGAGTGAGAGGATGGCACAGGAGGACGAGGTGGAGAGGATGAAGGGTCCAGCACATGCTGTCAGAGATAGAAAGAGGAAGAAGCATGCATGGCgatCTAACAGGGTGGGACCTGTTGGAGGAAGTGACACTGAGCCCAGTACAACACTGAAGGACCACAACCATTGACCCTACAGTTTAAATGTGCAGCTTTAATGCAGAGTAAAATAATGCTGGATTATTAGAATGTGGACAGAATTCTTCATTGTAAGAAGAGAACAAAGAACAGCAAGAGTACAAATGTGATGATCTCTTTAATACCAGTGTTTTTGGACACTACACTACTGAAGTTTTAGGCATATCTGTTCCTAATTAATATTtatcaattaatatattatgGTTACCCAGtgtacttggatttctgcataaattggtcattaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23608 lncRNA upstream 96284 9203389 ~ 9215506 (+) True G17496
TU23581 lncRNA upstream 227348 9082088 ~ 9084442 (+) True G17474
TU23578 lncRNA upstream 237291 9073494 ~ 9074499 (+) True LOC111194882
XR_002651329.1 lncRNA upstream 237302 9073568 ~ 9074488 (+) False LOC111194882
XR_002651316.1 lncRNA upstream 380030 8928692 ~ 8931760 (+) True LOC111194870
TU23799 lncRNA downstream 311 9482402 ~ 9482708 (+) True G17632
TU23804 lncRNA downstream 80337 9562428 ~ 9562725 (+) True G17637
TU23810 lncRNA downstream 104567 9586658 ~ 9586872 (+) True G17643
TU23850 lncRNA downstream 363923 9846014 ~ 9846301 (+) True G17679
TU23856 lncRNA downstream 405775 9887866 ~ 9888378 (+) True G17685
XM_007260060.3 mRNA upstream 179654 9119404 ~ 9132136 (+) False tfap2a
XM_007260059.3 mRNA upstream 179654 9121340 ~ 9132136 (+) False tfap2a
XM_007260061.3 mRNA upstream 179654 9122953 ~ 9132136 (+) True tfap2a
XM_007260058.3 mRNA upstream 179654 9123671 ~ 9132136 (+) False tfap2a
XM_022680109.1 mRNA upstream 242859 9009246 ~ 9068931 (+) True bmp6
XM_007260062.3 mRNA downstream 338870 9820961 ~ 9836628 (+) True slc35b3
XM_022680180.1 mRNA downstream 339450 9821541 ~ 9836628 (+) False slc35b3
XM_007260063.3 mRNA downstream 455670 9937761 ~ 9954129 (+) True eef1e1
XM_022680191.1 mRNA downstream 498515 9980606 ~ 9989518 (+) True LOC103024812
XM_007260070.3 mRNA downstream 509315 9991406 ~ 9995040 (+) True tmem14c
TU23538 other upstream 361631 8932707 ~ 8950159 (+) False G17443
TU23546 other upstream 390134 8916586 ~ 8921656 (+) True G17443
TU23528 other upstream 390134 8917975 ~ 8921656 (+) False G17443
TU23483 other upstream 595003 8675619 ~ 8716787 (+) True G17414
trnat-ugu_6 other upstream 2643897 6667821 ~ 6667893 (+) True trnat-ugu_6
TU23933 other downstream 799133 10281224 ~ 10281976 (+) True G17745
TU24160 other downstream 1695817 11177908 ~ 11190080 (+) True G17904
XR_002651390.1 other downstream 2373515 11855606 ~ 11855851 (+) True LOC111194942
trnam-cau_3 other downstream 2809179 12291270 ~ 12291342 (+) True trnam-cau_3
TU24769 other downstream 3485472 12967563 ~ 12975106 (+) True G18332

Expression Profile