RNA id: XM_022680295.1


Basic Information

Item Value
RNA id XM_022680295.1
length 2405
RNA type mRNA
GC content 0.51
exon number 13
gene id LOC103044364
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 10884853 ~ 10952099 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTGTGGTTCGGACGGGGGGAGGCAGACAATACCAGCACTGTTTGTTCTCCTCGAGAAGGTATTGAGAAAGGGAGGGTGAGAAGAAGGAGGGATGGGCGAGAAAGGAGAAAGGCAGAGGTCGTCAGTGGACGGAGCTGGCCATTGTGAGCAGAGTGGGCATCAGCCTTGAACCATACTGTGCTTTTAGTCAGGGTTTTTCAGTTGTAGGCCAGTTTAGAGGTTAACAAGCTGTGGAGAgtgaagagagaggagaggtcAGAAGCTCAGGCCAGAACTTTCAGAATGAAATCCCGTGCTGCACTCTCCCCGTCAACAACCTCTTGGAATATTTCCATCACAAGAGGCTTCAGTATTCTAACTGAAGACTAACTGCTTCAGGGCTCTGACCACATCTTCTGGAAATAGGGGAGAGGAGCGGGGCAGACAGGAAGTGGTGTAACAATGGAGGGCTGTTCTGTTCTTCCAGTGGTCATCATGATCTCCATCATGCCCGGTTTGGTGGGGAGTGAGCTAAGAATGTCTAGACAAGAACTGAGAGGCAGTCAGCTGACCGAAGGCCTCGGCGTCCCCCGTCCCCGAGCCAAGCGTGGCTGGATCTGGAAACAGCTGTTTGTGGAGGAAGAGGATCCCATACCCAAAATAATCGGCCAGCTGAAATCAAACTACGACAAAGGAGACTTTACGATCAGGTACATCCTGTCTGGAGAAGGAGCAGGAGATGTGTTCCGCATCGACGAGTTCAGCGGTGAGATCCATGCTCTAAAGAGTCTGGACAGAGAAGAAAAAGCCTTCTATGTGCTCCAAGCCCACGCTATTGACCGCAGGAACGGCCAGCCAGTGGAGCCTGAGTCCGAGTTCATCATCAAAGTCCAGGATATCAATGATAATGCCCCGGAGTTCATAAACGAGCCCTACGTGTCCAGTATTCCAGAAATGAGTCCGATAGGGACCACAGTTGTCCAGGTGACAGCCACAGATGCAGATGACCCCATGTTTGGGAACAATGCCAAACTCATCTATTCCATCCTGCAAGGAGAGCCCTACTTCTCAGTGGAGCCCAAAACAGGTATAATAGTGACCTCCTGGCAGAACATGGACAGAGAAGCCAGTGAGACGTATCTGGTGGTGGTTCAAGTGAAAGACATGTTTGGATTTTCTGGAGGCTACAGCGCTACGACAACTGTGACCATCACCCTCACCGATGTCAATGATAATGGACCAACCTTCCAACACAACTTGTACACATTTGCATTAGAGGAGTCAGCACCAGTGGGCACCACGGTGGGCAGGGTCATGGCAGAAGATGCTGACATTGGAGTGAACGCCAAGATGAACTACAGTCTGGACGACCTGGAGGAGAGCGCCACCTTTAGAGTCCATACGGATCCTGAAACACAGGAGGGGATAGTGACCCTGGCTAAACCTTTAGACTATGAGAGCAAGCGCAGATTTGTCATTGCCATAGAGGCCATCAACGCCCACGTGGACACCAGATTCCTATCCTACAGTGAATTTAGTGACCGGACGATGATTAAAATCCTGGTGACGGATGTGGATGAACCTCCACTTTTCTCCGCTGAGGTTTATGAATGGAAGGTTCTGGAGAACGCACCTGTTGGAACGCAGGTTGGAACAGTCTCTGGCAGAGATACCGATGCTGCCAACAACCCTATCAGATATTCCATAACCAAGAGCAGTGACTTGAGAAAAGCCTTCCGGATTGACCCGAACAATGGGACAGTGTCAGTGGCCAAACCTTTGGACCAAGAGACAGCAGCCTGGCATAATCTCACTGTCACAGCCAAAGAAACCAagGAGAATCAGCTCTCATCCTCAGTGTTTGTCGCCATCAAAGTCCTGGACATCAATGACAACATCCCCACACTGTCCAGGGACTACCAGCCCTACGTGTGTGAGGGCACAGAGGCAGGAGAGCTGATCCAGATCATCAGTGCGGTGGATGCAGATGACCCATCGGAAGGCCACCACTTTTATTTCTCTATGTTACCAGATAAACACATCAACCCCAACTTCACCATCAGAGACAACCAAGATAACACTGCAGGTATTCTGACACGTCGGAGCTCGTTTACCCGTCGTGACCGGACACTCTATCAACTTCCAGTTGTCATAACGGACAGCGGCTCCCCCGCCCTCTCCAGCACGAGTACCCTCACTATCAGCGTGTGCTCCTGTCAGCCTGCAGGACACTGCCCATCAGGAGGGGTGGAAGCACTGGCACTGTCTATGGGCCTCAGTACACAGACACTACTGGGACTGTCTGTGTGCATCATCACACTCATAGAGAGCTTGTAACAGTGCAAGCTAATTCAGTTCCACTTCACATCACACAGCCCTGTCCTTATTAATGCTAGCAGTGTGGAGGCACAggaagctgcagcagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24103 lncRNA downstream 32033 10854626 ~ 10855071 (-) True G17859
TU24078 lncRNA downstream 343497 10542505 ~ 10543607 (-) False G17845
TU24080 lncRNA downstream 344723 10540478 ~ 10542381 (-) True G17845
TU24030 lncRNA downstream 543841 10342796 ~ 10343263 (-) True G17808
TU24010 lncRNA downstream 588447 10293586 ~ 10298657 (-) True G17799
TU24186 lncRNA upstream 98158 11050256 ~ 11060895 (-) True G17921
TU24182 lncRNA upstream 120031 11072129 ~ 11080151 (-) True LOC103047439
TU24195 lncRNA upstream 133385 11085483 ~ 11090989 (-) False abr
TU24203 lncRNA upstream 194307 11146405 ~ 11147408 (-) True G17929
TU24310 lncRNA upstream 483338 11435436 ~ 11595509 (-) False LOC103044489
XM_022680282.1 mRNA downstream 546915 10329090 ~ 10340189 (-) False LOC103029242
XM_015608547.2 mRNA downstream 550203 10329090 ~ 10336901 (-) True LOC103029242
XM_007260076.3 mRNA downstream 608771 10267658 ~ 10278333 (-) True LOC103028097
XM_022680257.1 mRNA downstream 629231 10231513 ~ 10257873 (-) True mppe1
XM_007260074.3 mRNA downstream 768496 10103179 ~ 10118608 (-) True elovl2
XM_022680318.1 mRNA upstream 81078 11033176 ~ 11080184 (-) False LOC103047439
XM_022680315.1 mRNA upstream 81080 11033178 ~ 11080162 (-) False LOC103047439
XM_022680304.1 mRNA upstream 81083 11033181 ~ 11080162 (-) False LOC103047439
XM_022680321.1 mRNA upstream 121163 11073261 ~ 11080164 (-) False LOC103047439
XM_022667597.1 mRNA upstream 128584 11080682 ~ 11083053 (-) False LOC107197924
TU24000 other downstream 639786 10246675 ~ 10247318 (-) True G17792
TU23805 other downstream 1324379 9562427 ~ 9562725 (-) True G17638
TU23350 other downstream 2879865 7929289 ~ 8007239 (-) False LOC103026934
trnat-ugu_80 other downstream 3898293 6988739 ~ 6988811 (-) True trnat-ugu_80
trnat-ugu_79 other downstream 3898845 6988187 ~ 6988259 (-) True trnat-ugu_79
TU24180 other upstream 63931 11016029 ~ 11080151 (-) False LOC103047439
TU24181 other upstream 63931 11016029 ~ 11080151 (-) False LOC103047439
TU24200 other upstream 124140 11076238 ~ 11083799 (-) True LOC107197924
TU24378 other upstream 732889 11684987 ~ 11685391 (-) True G18037
trnam-cau other upstream 1337585 12289683 ~ 12289755 (-) True trnam-cau

Expression Profile