RNA id: XR_002651820.1


Basic Information

Item Value
RNA id XR_002651820.1
length 1881
RNA type misc_RNA
GC content 0.50
exon number 3
gene id LOC111195794
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 30259308 ~ 30263850 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCTCCAATCGCCCCAGTCTGCTGCCCATCGTCTTCCCGGAACCACCAGAGCCTGCCATGGTGCCAAGCTGTAAATGGCTCCTTGCTGTTTACAGTCAGGACATACTGACAAGGCTTTATGATGTTAAGGCCAGGATAACATCAACGTATGGAACCATTACAAAGATGTATTCCACCAAAAAGGTTAGAGAAAATATCTTGCATGTACTTTGTCAATGCACTTTTTATATCCACAGTGTATAGGGCACATTCTTAAACAAGCTCTGTAAACTTTGTGTGCTTCAGATCACCAAGAAGCTGGCCGGGACAGTCACCGGACAGGAACCGGACTTTGGCTCACCTCTGTCGGCAATGAGTTGGGCCAGGTGCTTATCAGTGTGCTGACGGCTCAGGAGGGGGCTGGACTTGACAAGATGGCAGATGGCTTGGTGAGAAGATATCAACAGGCCAGTGTGGATCCACCTGTTGTTCTCTATGTGGACTGTGGATGCTGCACTCTGGCAGGAGACACTTAGCTGAAGACCAGGTTCAGTGGATGGCCTGCTCTACATATTAGGCTGGACATTTGGCATTTCATGCGGAGGATCGCACTGGGATGCACAACAGATGCACATCAGTTGTATCCCATTTTTATGTCATGTCTGTCATCCTGTATATTTGAGTGGGATGCAGCTGATGTTGCTCTGTTGCGTGAGGCCAAAAGACAGCTACTGATGTCCCTGGGTCTGCCTGCACAGGATGATGCAGTGGTCAATCAACATCTGACCAAGGAAGAGCTGGCTCTCCATTGCAGGAGGAGGACCCGTGGAGTGGAGACCACTGCCCACCTCATTGAGCAGCTGCTACAAGAGCTCATGGGGAGCAGTGGGAATAATTCTAATGGGGTCCCACTTGTTGACCTCGAAAGGATGGAGCATATTTGGTGTCCAGAAGAAGCACATAAAGTGCATCCAGGACCCACCAGATGTAGCGCTCTACACAGAGACAGGAGGCATCACAAAGGGGGGTGTGCTTCTCAAAACATATCGGTGTGCCAGGGGCTCAACTTCTCTTGAGTCATTTCATTTACACCTGAACCGATTCATCCCAGggaGCAGTGCCAACAGTCTAAACTTTCAGATATACCTTCTGGAAGGACTCCACAGGTGGAATCAGGACTGGGCTACTGCTTCTCTGTCTTCAGGACCATCTGTTCTGCGCAGCTACACAGGTGACCTGgttcacagtgtaaacaggaACTGTGAGAGACTTTGGCAGTGAAGTGGTCCCCAGTTTCTCCCCTCCTGCATGTTACACCGGTAAGACATCGTGATTAGTTATGCTGTTGTACTTCAATTCATGGATTTTTGGTGTACTTTGATTAACGCTACTGttcccttttatttctgttttctaaGGTGAGCTAATAGGAGTCCAGTATCTTTTCCGGCAAACTGGTCAGGTGTTGCAGGATATGAACCCTGACTCAGGGGAGACGGCACAGCTGATTGAGGAGCATGATGTGGTGGATGACAGGGAGGGTGACGAGGGTTTCTGTGACGTGATGGAAGATCCCACAGTTCCAGACCTGGAGGTCATTCTGCCACCAGCTGTATGTTACCAGACCTCTGGTCTGTCCACGCTGTCCTCTAAAGAGCATTGTGCCATCACCATAGCTTCCAGTCCATCTATTGTGCCCCACAGCACCTTTACAATGGCCCCATGCACCTCCACCCTAGGCTCCAGCACCTCCACGCCAGGTTTGAGCACCTCTGCTTTGGCCTCCAGCACCTCTACTATGGCCCCCAGCACAACGGCCCTTGCCCCAAGCTCCTCCACTCCGGGCTCCAGCACTCCAACACAACTgtGATGGAGCTATTTTCAGTCCATGGAGTTTACAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30284 lncRNA upstream 253814 30000115 ~ 30005494 (+) True G22456
TU30281 lncRNA upstream 257606 30000115 ~ 30001702 (+) False G22456
TU30261 lncRNA upstream 395243 29862505 ~ 29864065 (+) True G22445
TU30241 lncRNA upstream 670038 29589046 ~ 29589270 (+) True G22430
TU30235 lncRNA upstream 690938 29567663 ~ 29568370 (+) True G22424
TU30425 lncRNA downstream 1477 30264370 ~ 30264646 (+) True G22556
TU30427 lncRNA downstream 2132 30265025 ~ 30265290 (+) True G22558
TU30449 lncRNA downstream 41402 30304295 ~ 30304616 (+) True G22576
TU30504 lncRNA downstream 177612 30440505 ~ 30446957 (+) True G22614
TU30513 lncRNA downstream 186471 30449364 ~ 30512818 (+) False LOC103026436
XM_022668572.1 mRNA upstream 9560 30227545 ~ 30249748 (+) True LOC103041619
XM_007260126.3 mRNA upstream 79501 30174820 ~ 30179807 (+) True LOC103043161
XM_007260113.3 mRNA upstream 97481 30145146 ~ 30161827 (+) True LOC103039153
XM_022684052.1 mRNA upstream 116145 30131539 ~ 30143163 (+) True dcaf11
XM_007260116.3 mRNA upstream 129983 30124804 ~ 30129325 (+) True ngdn
XM_007252928.3 mRNA downstream 20748 30283641 ~ 30295918 (+) True LOC103028785
XM_022684145.1 mRNA downstream 112682 30375575 ~ 30393769 (+) False LOC103040669
XM_022684143.1 mRNA downstream 112710 30375603 ~ 30393769 (+) False LOC103040669
XM_022684138.1 mRNA downstream 112725 30375618 ~ 30393774 (+) True LOC103040669
XM_022684141.1 mRNA downstream 112725 30375618 ~ 30393773 (+) False LOC103040669
trnav-aac_1 other upstream 868696 29390540 ~ 29390612 (+) True trnav-aac_1
TU30023 other upstream 1270477 28988568 ~ 28988831 (+) True G22276
TU29918 other upstream 1613029 28645061 ~ 28646279 (+) False LOC111192074
TU29690 other upstream 2739122 27513606 ~ 27520186 (+) True G22004
trnat-agu other upstream 2752558 27506677 ~ 27506750 (+) True trnat-agu
TU30785 other downstream 1231452 31494345 ~ 31494898 (+) True G22834
TU31098 other downstream 2559451 32822344 ~ 32826939 (+) True G23086
XR_002651887.1 other downstream 2574159 32837052 ~ 32841326 (+) False LOC103042732
TU31174 other downstream 2813761 33076654 ~ 33081862 (+) False LOC103037425
TU31552 other downstream 3631482 33894375 ~ 33922851 (+) False cnksr3

Expression Profile