RNA id: XM_022684755.1


Basic Information

Item Value
RNA id XM_022684755.1
length 5514
RNA type mRNA
GC content 0.53
exon number 30
gene id LOC103030910
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 33983194 ~ 34046385 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGAGCGGAGGACACgcgcagcagcaggagcagcagcagcagcagcagtgagtcGGTTCAGCGTTCATGGAATAATAATTGAGAAACTTCAGTCACTCCAGCAGCTGATGAGCAAGAAAGGCCACAGaacagctagagagagagagagagagagagagagagagagatcgtaAGTCAGAAAGTCCTGCAGGACCAGTGGAGTAAAGGATTGCACAGAGGAGGATaacagaacagcagcagaaaaacAGCGGGACTATCAGAACACTGCAGTGAGGAATATGGGAATATGAGGGGTTACTACTGTTCATCCTAAGGACTTCAACAACAACAGCTGATCAGAATGGGGAACACAGACAGTCAGTACAGCAGCTTCATCATCCCCAGCAAGTCCCGACCCTGCTCTCTAAAGATAAATCCCCCCAAAGAGGAAGCCCTGTCCCCCCACAGCTGGTGGAGGAgcgcaggaggaggagggggaggagaaggaggaggaggagcgtCTAACTACAAGTCCCGCGGCTCATTCAGAAACAGCTCAAACCAGCACAAAAATGGCCAGCCATACGCCTCACGCCACTGTGAATACATCaaaagcaacaacaacaacaagcaACAGCAGCACTGTTCCACACAAAACAACAGCAAGCTGGACTATGGGTGTCTCCTGGCTCAGCAGAACGGCTGCTATGTTCAGGGCAGTAGCCCCCGACCCTCAGCCAAAAGCTCTGGCTCTGAAGATCTTCACAGCAGAGGAAGTCCCAAGGTGCTATTCAGGCAGGACGGGAGTTTGAGGGTTGAGTTTACCAACAGCAGGCCAGAGCTGGATGATGTCCCTAAGGACTCTACTCTGAGAGACAGTAAAGGCAGCTCCCTCAGCTCTGAGGCGTCCTGGTACGATTCTCCATGGGGTACAGGGACAGATCTCTGTGATAACGTCTTTACCACTGGTCAGCCTTCGGACAACAGTAGCGGCTACACCACTCTGTCCTCTACACGGACTGATGACTTCAGCTCCTGCCCCACAGTCCAGCTGGACGGACACGTGACTGAACTACTCCAGCCCTATCACCAGGCCAGGATCAACAGCAGCCAGTACAGCAGCAACGGCTACGTCAGCAGTTATTCCGGACGCACTGAGGAGGACAGCGGCATCGGAGACTCTGTCCTGCTCTCTATAGAGCCTAAAGACTTTGGATTGACCTCTTTCACTGAACTCTACACTAACCCCAACCTAACCGGCCCATTTCCCACCACTGGAATACTGCCAACAAGTCATGTGCAGGACATGCCTGACCTCCAAGAAGAGGCTCTTGAAACCCAAGCTTTTACCTCCCTCACACTCCCTTGCAGAAAACCTGTCAGTGACACCAACAGCAGGAAAGACTCGCTGAAGAGCCGCATCCGCCGCCTCAGTGACTGGACGGGCAGTCTAAGCAGGAAGAAACGGAGGCTGCAGgagCCGAGCACTCTGGAAGTCTTCGAGCCGCTTAGCAATGGAGTGGACGGCCTGCTTGGTGACTCCAGCCTTCAGCTGGGTGGCGGCCCGTACTGGAATGGCCTTGTGTCCAGCCAGACGCAGTCGGCCTGCTCTCTAACTGACCCTGTGCAGCAGAGCCAGAGACAGAACGTGTATGAGAACTTTAAGCAGGAGCTGGAACCGGGTGGAGGCTGCAGCAGTGCTCTGTCGGATGCTCTTCAGGCGTGGGAAGGTGATGGGGAGCAGGGCGAGAGCAGCAGTGGTTCTCTGGGTTCTCTGGAGCAGATGGAGCTACTGTTTGAGAAGGAGCAGGGGGTGGTGCGCAGGGCCGGCTGGCTGGCCTTTAAACCGCTCATCAGCCTGCATAAGGAGCGCAAACTGGAGCTGCTGACTCGCCGAAGGTGGAGGCAGTACTGGGTCACACTTAAAGGCTGTACGCTGCTGCTGAGTGAGGCTAATGGTAAAGGATGTCCAGAGCAGGAAGCCGCCCCACGTTACGCCCTGCAGGCTGAGGACAGTATAGTACAGGCTGTCCCGGAACACCCCAAGAAAGAGCATGTCTTCTGTTTGAGCAATGCTTATGGAGACGTCTACCTGTTCCAGGCTGCTAATCAAACGGACCTCGAGAACTGGGTGACGGCTATCCACTCAGCCAGCGCCTCACACCTGGCCAAACGTCAGGGCAAAGAGGATACAGTGCGGCTGCTGAGGAACCAGAGCAAAACCCTGCTGCAGAAAATCGACATGGACAGTAAGATGAAGAAGatggctgagctgcagctgaCGGTCATTAGTGACCAGAAGAACAGGAAGGCTGTAGAGAGCCAGATCCAGCAGTGGGAGCAGAACCTGGAGAAGTTTAATATGGAGCTATTCCGCATGCGCTGTTATCTAGCCAGTCTGCAGGGCAGTGAGCCTCCCAACCCAAAGAACCTGCTGGCTGCTGCTGGACGCCCGTCAAAGACAGCGCTCAGCCGCTTGGGAATTTTCTCTGTGTCATCTTTCCACGCCCTGatGTGCACTCGTGACGAGGCCACTCTGAAAAGGCGTTCCCGTTCTCTGTGTCGTGGCGTTCGGAGCAAACGGGGAATTTTCTCCTCTCAGAAAGGCCAAGACAGCCTGACCAGACGGAACCATGAAAAGAGACAGTCTCTATCACAGATATTCGAGGGACAACCCCCTGGAACTCTGTGCCACCCAACAATACAGAGCAGCTCTGAGCAGAGACTGGACGGTTTATCCAAACTGCACTCTACAGCTCCTCCTGAAGGCCACTCCTGGGACTGTCCTGTAGAAACCCTGGTGCTGGTGTCTATGCCGGATGGCCATGTCCTCAGTGTTCCTGTTAAGCAGGATTTCCTAGTGGCTGACCTGCTCTGCATGGCCTGCAAGGCTAAGCAGCTGGAGCCGGTGCTGCACTGCTTGCGTGTGAAGAGGCGTTTGGGTCAGGATGGGGAGTCCAGCATTCCAGCTCCCACTGACCTCCTGAGAGAGCTGGTGTATGATGAACTTGAGGTTTGCCCGCTCAATGTTCTCATCCTAAACATGTCACGTCCAAACACATCCATTGATTTTGGGTTTGCTGTAACGGGGCACGTGGACGGCTCGAGGCGGAGTCACATCTACGTTAGTGAGGTGCAAACTGAAGGCTTGGCGTTCACTGAGGGACTGAGGGCTGGAGATGAGATCTTGGCTGTGAACAGTGTGAGTGTATCTACTCTGGACCTGGGCCTCATACACACCTTCTTCAGCCAGAACACCCTGCAGCTGGTCCTGCGGAGAGAGGAGTGCGTATCTGATGATCAGAGCAGTGCCTGGCCAGAGTGCGACCCTGCTGACCCCTACTGCCCTCCTCCACCACTCAGCCACAGCCATCCACAGCTGGGCTCTTTAGAAGTGTCTCAGTTGCTGGAGGTTCGAGGAGATTCGATGGTGTCTGTTTCAGAGGAGGCACAGGATAAGACTGCAGAGCGCTGCAGAAAGaTAGTAACTCCTGCATGTCCACTGTTCCAGCCTTTCCCAGAAGATCCAGGCCTCACTGTGGACGGCTACAGAAACCCTTACTCCACTGAAAGTGCTCCAGCCAGAGCCAGCCCACGCCACATGTCCGTCACAGAAAGACTGCACAAGGTCATTCAGGAGCTGGTGGACACAGAGAAGTCATATGTAAAGGATCTGGGCTGTCTGTTTGAGATCTATTTGAAGCCTTTAGAGAGACAGACGTTCCTCAGCCATGGAGAGATGGAGTCTCTGTTCGGCAGTCTCCCAGAGATGCTGGACTTTCAGAGGATATTCCTTCAGACCCTGGAAGAGAGAACCACCTCATCTCCAGACTTCAGGACACTGGAGACACCTGAGCAGCTCAAGAAGTTACTGTTCTCTTTGGGTGGATCCTTTCTGTACTATGCTGACCACTTCAAGCTGTACAGCGGCTTCTGCGCCAACCATATCAAAGTCCAGAAAGTTTTAGAACGAGCGAAGACAGACCGGGCATTCAAAGAGTTCCTGGAGGCGAGGAACCCCACCAAACAGCACTCGTCCACTCTCGAGTCCTACCTCATCAAACCTGTGCAGAGAGTGCTGAAGTACCCTCTGCTGCTGAGAGAGCTGGTGTCCCTGACTGACCCCGAGAGTGAGGAGCACAGCCACCTCACAGAGGCTTTGAGGGCAATGGAGAAGGTGGCCAGTCACATCAATGAGATGCAGAAGATCTATGAGGATTACGGCACTGTGTTTGACCAGCTGGTGGCAGAGCAGagcagtacagagagagagGTGACGGAGATCTCAATGGGAGAATTCATCATTCATAGCTCTGCACTGTGGCTGAACCCCATGCCCTCACTGGGTCGAATGAGGAAAGACCCCCAGCTCACTCTGTTCATCTTCAAGAGGGCAGTTATTTTGGTGTATCGTGAGAGCAAGCTGAAAAAGAGGATGACAAGCTCCCGCTCTGCAGATCTGGACCCTTTTAAATTCCGCTGGCTGATTCCCGCCTCATCTGTGCAGGTTCGCCCTGGAAACTCAGCAGGATCTGAGGACCCCTGTCTGTGGGAATTAATTCACACGAAGTCAGAAGTGGAGGGAAGACCAGAAACTGTTTTCCAGCTCTGCAGCAGTAATTTGGAGAACAAGGCCAACGCAGTAAAGGCCCTCCGCTCCATCCTGAGAGAAAATGCTAAAAGGAACGTTCCAGCTGAGCGTGGATCCAGAGACAACCTAACGTTTCCCCGGAGGAGCCACCCAGCAGCAGTCAGAAGCAGCTCCTGGCTCCAGAGACTCCAGCCGCAGTCAGATGCACTTAAACGCAGTCCACTAGACACAGACGAGGGCAGACTGCTCGGTATAGACACTCAGTCAGAGCCCGCCTGCGCTCCCAGAACTGACAGAACTGACACCTCTCACAGTAAGAGAGCTCGACTCTGCTCCCTCACCAGCTCACTGGAGGCCCAGCTCCAGAGACTGAGCTTCATGGACCCGCAGGAGACCAGACTCAGAACCTCCGGCAGCCTGCAGGCCAGTCAGCTCACCCTGCTGCAGGACACGTCTGCACTGGACCTCAACAACCTGCTGACTCGAGACTGCAGCGTACAGAACCTGAACTCTGTCCCTAATGAAGACTGCTTCTACGACACGGTCATGGGCATCCAGAAAGCTGTAATCCCCACACTGTAGAGTTAGCAGGGGTCTTCATTTCTGCACTTCTGGTCCTGGAGGGTCTTAGTCCAGCAGTTTTATGGTGTTCTTATGTGCTCAAAGAGTTAGATGTGATTCAAGCCAAAGTTAGTTAGGCTGCAGCCAGTGGGTTAAGTATGATGTTTTGGGTCCTCAATATAACAGAACCTCCGAAGTCATAAGTGTATAAAAGCATTGAGGGATGTATGGGCTTCAGTCCAGAACTTTTATTGGGATTGGTCACATTGGACCCAGAGTATGATGGCACCTTTAACATTGCTAATAGCTATGCCACTGGTTGTAGCCTGCAGTTATTtagttaatataataattataataataataattttaaataataatctt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31547 lncRNA upstream 95325 33885462 ~ 33887869 (+) True G23427
TU31509 lncRNA upstream 203294 33777942 ~ 33779900 (+) False cebpzos
TU31507 lncRNA upstream 203294 33778533 ~ 33779900 (+) True cebpzos
TU31468 lncRNA upstream 328205 33650637 ~ 33654989 (+) True G23367
TU31456 lncRNA upstream 387636 33587563 ~ 33595558 (+) False LOC107197779
TU31586 lncRNA downstream 205 34046590 ~ 34047774 (+) True G23462
TU31638 lncRNA downstream 201452 34247837 ~ 34286895 (+) True G23499
TU31850 lncRNA downstream 616679 34663064 ~ 34667031 (+) True G23684
TU31849 lncRNA downstream 629633 34676018 ~ 34679797 (+) True G23683
XR_002651946.1 lncRNA downstream 782451 34828836 ~ 34830350 (+) True LOC111196008
XM_022678137.1 mRNA upstream 18686 33894336 ~ 33964508 (+) True cnksr3
XM_007255437.3 mRNA upstream 184420 33789582 ~ 33798774 (+) True ndufaf7
XM_022684736.1 mRNA upstream 203291 33778670 ~ 33779903 (+) False cebpzos
XM_007255535.3 mRNA upstream 301358 33676075 ~ 33681836 (+) True pax1
XM_007255447.3 mRNA upstream 333537 33625486 ~ 33649657 (+) True xrn2
XM_007255431.3 mRNA downstream 4868 34051253 ~ 34069327 (+) True LOC103030598
XM_022684761.1 mRNA downstream 4868 34051253 ~ 34069327 (+) False LOC103030598
XM_022684767.1 mRNA downstream 50104 34096489 ~ 34193035 (+) True LOC103034505
XM_007255428.3 mRNA downstream 159958 34206343 ~ 34244662 (+) True LOC103029743
XM_022684788.1 mRNA downstream 160874 34207259 ~ 34245118 (+) False LOC103029743
TU31552 other upstream 60343 33894375 ~ 33922851 (+) False cnksr3
TU31174 other upstream 901332 33076654 ~ 33081862 (+) False LOC103037425
XR_002651887.1 other upstream 1141868 32837052 ~ 32841326 (+) False LOC103042732
TU31098 other upstream 1156255 32822344 ~ 32826939 (+) True G23086
TU30785 other upstream 2488296 31494345 ~ 31494898 (+) True G22834
TU31950 other downstream 1180464 35226849 ~ 35246299 (+) False trdn
TU31951 other downstream 1180464 35226849 ~ 35249655 (+) False trdn
TU32264 other downstream 2385823 36432208 ~ 36438970 (+) False ar
TU32543 other downstream 3592053 37638438 ~ 37654878 (+) True LOC111194342
TU32737 other downstream 3881970 37928355 ~ 37933989 (+) True G24345

Expression Profile