RNA id: XM_022684767.1


Basic Information

Item Value
RNA id XM_022684767.1
length 7445
RNA type mRNA
GC content 0.56
exon number 23
gene id LOC103034505
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 34096489 ~ 34193035 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TAGATTGTAAACTCTGAGAGATTTAATCAAATTCACATTATAAAAAGCAGCAATTGCATTATCTATGTTATACTGCAGCGTATTACATAAATAATGCTATACTGCTGCATAttacatttaacattattataaaaactgaagaaacagctttgaaaaaaacaGAGTGCACGCACAACATTCCAGCTCCTGACTCCAGTCCGGGGTTTCACTAACCAGCTCGTTGGCTCGACTAGCAGCAGCACAAGTGGGGCAGGAAAACTTTGACACACACCACTGACTAGTATGAGCTTCATCATGCGTCCCAGAGAGTGCTCAcagattttaattataaaacatgAACGGCCTGCAGAGATTAAACAATCCTCGtttctttaaaacatatatgaaCAATAAACCATTTTAGCATGATTTCAATAAATCTTAAACGTGTATAtgttatataaaaattatactGAATAGAAAGAACAAGATTCGTGCTAGCAAGAGGAGCAGCTGTGAAATGCTGATCAACCCCTGGATCAgtattaatgctttttattcTCCCCATTAAAGCAatcctatatatatatgagcGACACATATAGACATTGTAAACATAAGCCTTTATTTCACACACAGGTACTGTAATAGACTGCTTCAGTATGAAAACGAGTCTGATGGGGATTGATGAAGTGAAAAACGCTGGAAGTTAATATCCCCCTCCTTCGCCTGGCCACTGTCGCACACctccagagcagcagcagcatcagcagctacAGCAGGAGCAGCATCAGCCGCCGCTCTACCAGCAGCAGCACCGGCGGAGCGAGGCGGCGCAGATCAGCGTGAGCAGGCAGGcggcagcagctgcagacaaACACGATGGTGGGAAGAAGGGGAGTATTTTCTCCTGCCTGGTCGATGATCACCATCAGCGAGCGCTAAGAGCAGAAgtaagaggaggaggaggtggtgttggtggtggtgctgcTAGAGGTGGAGAGGAGCAGAAGGAGAAcgagaaggagaaggaggaggaggagggtcgACCGTGCACAACGGCGGATCGCATGGGCAGCAGGCGCGAGCAGGAGCAGGCGAACTTTGGACCAGCGAGCGGCGGCGGTGGTGGCCCGTCTCGGAGTGCGAGCAGCTCGGTTCTCGAGTTTAATCATTATTACGGGAATGGAAGAGGATGGCCTTGCTTTGATCAACATGGCGGACAACAAAGCACAGCTAACTCGGGTATGATGATGCATTCGGGCCAGAACAACATGGATCAGATGCAAAACTCGCACGAGGAGTACCACAATAACCCCTACAGCCACTACCCCAACTACCGGCCCGGCTACGGGGCCGCCGGGTACGGTATGATGAGCCCTTCGCGGCAGGGAAACATGATGGGCCCGGGGAGCAGCAGCAACTCATCCGCTGCctccgctgctgctgccgccgctcACAGCAAGGCTGTCCCGTCCCCCGTTGTTGTTGGCGGCGGTGGAGGAGGTGTcagtggtggtggtagtgctGTAAGTGGTGGAGGGGGCTTTCAGCGGTTCCCGGGACAAACTCAGCAGCATCCTTCGGGGGCTACTCCGACTCTAAACCAGCTCCTGACTTCTCCCAGCCCGATGATGCGAGGCTACAGCAGCGGCTATCAAGACTACAGCAGCCCCACTCAGCAACAAGCCAACATGGGACTAAGCAAAGACTTGAGCTCCCAGTACAGCAGCACTGCGAGCCACGGCTGGGGAGGACAGCAGAGGAATCACCCAGCTATGAGTCCGGGCAACAACGGGCAAGGAGGAAACAGATCCCAGCAGATGATGGCACTCTGCCCTGAATTTCTGCACTTGCCAATCGTCGAGTCCTGTGCTCGCTATCGTCAGCTCAGCAAGGTGTCGCCGATGGACGCCATGTCAATGAAGCGTTCCCAGCTGTATGGGATGGATAACAGCCCTTATtcccagcaacagcagcagcagcagcagcagacaggcGGAGGCTACTCCACCCAGCCTTATGGATCTCCTGCACCACACCGATACCCAATGGGAATGCAGGGGCGTGGACAGGTCGGCATGGCAGGGATGCAGTACTCTCAACAACAGCAGGTTCCAGCGCAGTACGGGCAGCAGGGTATGGGCGGGTACTGCCAGCAGGGACAGCCTCCGTACTTCAGCCCTCCACAGCAGCAGCCTGCCGCTCCCTCTCAACCCCACTACATGCAGCCCCGGGCTCCTCCTCAGCAGGACGCTCCACAGGAGGGTTATGGTAACCGAGGTCAGCCTGCTATAACTCCTGGGAAGCCAAATCATGATGAGATGGGTCTGAACCAGCAAGATCGACCGTCCAGCCTTCCAGACCTGTCTGGCTCTATAGATGACCTCCCCACAGGTACAGAGGCAGGCCTCAGCTCAGCGGTCAGCGCCTCAGGCTCCACCAGCAGCCAGGGGGATCAGAGCAATCCCGCCCAGTCACCTTTCTCCCCCCACGCCTCACCCCGCCTCTCCAGCCTTCGCAGTGGACCCTCGCCTTCCCCGGTCGGCTCGCCTGTGGGCTCCAGCCAATCACGCTCCGGACCCATATCACCGGCTAGTGTACCAagTACACAGATGGCCCCGCAGACCCCTGGGAACGTTTCAGATGTGGGCTCCCATTCCACCCTCAGTCAGTCCCCCATGTCTCAAGAGAGGGGATTTGCCTCTAACCTGCAGCGTACTGGCCCTGGCTCACAGTTTGGTCCCCAGCAGCCTGGGCCTGCCATGTCCCCCCACCCGTCTCCTGGGGGCTCGATGCACCACAGTGTGGGATCCTACCAGCAGGGCGGCGCTACCTACGGGCCACAGAGTGGACAGTATGGTCCTTCAGGTAACTACCCACGTCCAGCCAATTACGGTGGAGCTCCTGGCCCCAGCTACAGTGGCCCCGGGCCAGGCATGAGCCTGGGGATGAACGCTAGCAGCCCTATGCACGGGCAGGGCCCCGGGCAACCCTGTGGCTCCATGCCGGCTGGAAGAGGCCCCGGTCAGCCAGCAAGCGGTCGTCCGTACCCAGCAGGATCCAGCAGCGTGGCCCCTACCTCCCCGAATATGCCCCAGTCTGCTGGGCCTGGGATGGGTCCCCCTCCACCCACGGTTACCCGTAAACCTCACGAGACCGGACCTGCACCATGTCCACAGAACCCCCTCGCATCCGTCCAGGCCAGGCCTCCATATGCCAGGTCCCCTGTATACCTAGGACTATCTGGGCCAGGGGGGAGACCGGCCCCCTTCACTTCCTCACATTTTTCTCACCCGCATCATGTTCCATACGGCAGTGGCCTGGGTCAGCCTCAGTCCGAGCAGTTTGGGTCAGGCGGGTACTCAGGAGGACCCTCTATGGGTGGAATGGGCCCTGGTGGCCTCTATAACCAGCCGCCGGGCAGCAACTCCAACAGGATGAGCCTGCAGGGTCCTGCATACAACGCCATGCCCTCTGGACCCATGGCCATGGGGGCAGGAGAAGGCATGCCGCCCACTGACCCGAAACAGAGAACTGAGCACAAAGAGGAGAGCAGCATGGCGAGCACAGAACAGCCTAAAcctaAGGACAGCTACAGCGCTCAGTGTGTGTCTCAGCCCCCCACCCCGTCCCCCCTCTCCCCCAGCCCTGCCAGCCTCTCCTCCAATCACGGAGATGACAGTGACAGCATTAGCAGCCCAGCCTGGCCAAAAACACCCACCAGCCCTAAGCTCAGCTCAGCCACCATGACGAATGAGAAGATAGCGCGTCTGTATGAAATGGGCACAGAGCCAGAGCGGAGGACGTGGGTGGACCGCTACCTGGCCTTCATGGAGGAGAGAGGCACCCCTGTACCCAACCTGCCTGCTGTGGGGAAGAAGCCTCTGGACCTGTGCCGCCTTTACATGTGTGTGCGGGAGATCGGAGGGCTGGCGATGgtgaataagaataagaaatggCGTGAGCTCTCCACTGTCCTTAATGTGGGTACATCCAGCAGCTCAGCCAGTTCTCTAAAGAAGCAGTATATCCAGTACCTCTTTGCCTACGAGTGTAAGGTGGAGCGTGGAGAGGAACCCCCGCCGGATGCCTTTGCCATGGGGGACAGcaagaagcagcagcaccagGCCAAGGTCCAGCCTCCATCACCAGCAAACTCTGGATCTCTCCAGGGACCTCAGACTCCGCAGTCAACAGGGAGCAGCTCCATGACAGAAATGCCTGGAGATTTGAAGCCCCCAACTCCAGCAACCACTCCTCACAGCCAGATGACACCGCAGCCGAGTGGCAGGAGCAGTGGTGTGAGTGTGCAGGATCCCTTCTCGGAAAGCTGTGACCCTGCTTTCCAAAAGCGGGGCAACGTGCCCCCTGGTGTGATGTATCAGCAGAGTGCAAACGTTGGAGATCCCAGTGTTCGAATGCAGTACGACGCCAACAAGGAACCCTATGGAGGTCCACGAAAGGGTGGCAGTGATCCTTACATGCCAGGACAAATGCCCAGCAGTGGCATACAGGACATGTACCCACGTGGACCCTCTGGAGGGCAGGGTATGGGCCCACGTGCCCAGTATCCTTACAGCCCAAACTTTGAGAGAAGACCTGCCCATGCGATGGGTCCAGAGGGTGGATTGGCAACCCCTGGGAATCAGAACAACGTGATGCCTTCCAACAGTGATCAAAGCTTGTACTCAGGCAATAGGTACCCCTCTCATCAGAGGCATGGACATGATGGTTATGGCCAGCAGTATCCCCAAGGCATGCCGTACAGTGCTCATGGAATGTACCCACAGCCACAGGGCTACAAGAGGCCTGGGGAAGCGATGTATGGTCCCTCAGCAAAACGGCATGAGGGTGAAGGCTTTGGAATGCAGTACAGTGGCCAGCAACCAGACATGTACGGCCAATATGGTAGTGCATACCCAGATCGCAGACCCATGCAGGGTCAGTTCCCGTACCAGTATAACCGTGAACGCATGCAGCACGGAGGACAGGGTCCCCCCCAGCACGGCATGATGAGCGGAGGTCCATCGTCCACTCCCAGCGGAGCACCTCAGGGTTGGCACCCCAGGACTGAAATGGGCTTCCCATACACAAGCAGACAGGGCCATGGACCCCCATATTCCTCCATGAACCGCGCAGATGACCCAGATGGCAGGGCAAATCAGGACAGTCAGTGGCCAAGTCACCCTGGGCAGCGCCAGTCACCTTTTCCCTCCCagtcctcctccagctccttgCCCCCCATGACAAACCGTCAACCTCCGGCCTCATACCAGTCTCCTCCATCCATGCCCAACCACATCGCACGTGCTCCAAGCCCAGCGCCCTTTTCTCGTCCCATGGGGGGTTCCATGTCCCCCAATAAAGTTCATTTGATGCCGTCTATGAAGATGCCCAAGACAGGGATGCCTGGGTCCATGCCATGCTCTCAGAGTGGTGGTGTTCCAGTCCAAGGCCTTCCTCCTATCCAACGAGAGATCACTTTCCCTCTGGGTTCCGTTGAAGCTACACAGCCTCAGTTGAAACCTCGTAAGAGGTTGACTTCCAAAGACATTGGAACACCAGAGGCTTGGCGTGTGATGATGTCTCTGAAGTCTGGTTTGCTAGCAGAAAGCACTTGGGCCTTGGATACCATAAACATCTTACTGTATGATGATAACACAGTGTCATCCTTTACCCTTTCACAGCTGCCAGGTTTCTTGGAACTCATAGTGGAGTATTTCAGACGATGTTTGATCGAGATCTTCGGTATCCTGAAGGAGTACGAAGTGGGTACAGAGGGCCAGAAAACACTTCTCGGTCCCATTCAGGAGCCGACAGCCAAAAAGGAGGAATCGGAATCTGAGCTCAAGGAGCTGGACAGCCATTCAGATCCCGAGCAGCCAGAGAAAAAGCCAGAAACAGCGTCTCAAAGGCCTGTCCCCAGCAGCACATCTGGAGCAGATGCTTCAGAAAAGAAGAAACCAGCAGAGACGATCGATCAAAAAGGAGAGAAGGACATGAATGCGAGGAAAGAAAAATGTCCTTCCTTAGAACCAACGGCCAAACAAGCCAGCAAGTATGACCGACTGCCAATAAAGGTGGAGGAAAGGGAGGCAATCGACGACATGGTGGAAGACCGATCGGAGCAGCTAGGTCTTGTTGGAGATTTTATCAGTGGCTTGCTGCACTGGAAGGCTGGAGGTGGAGACTCCACAGCACACATTCAGACTCACTTAGAAAGAAAGTATCAGGAGAGAGAATCTCAAGCCTCGCCTGTAAAGGAGTTTGAATGGGAAAACGAACAAGGCCTGGACAGTGAGGACTGCAGTAGGGTAGAAGAGGAACCTCTTAAAGAAGCCCAAGGTTCGACAGACAAGAACCTTTCAGCTGCTGTGGTGAATGATGTATCATGTTTTGCTCCACCGACGCTACCAGAGAACGAGGCTAAAGGTTTCTCTTTACGAAACCAAGAGAACAGCATCCCTTTGCTGGAGGATGAGCCTCGATGCTGGGATGAGGCACCGCTCTCCACAGCTGAGGATTGGCAGGATGAGCTTGCCAAGCGCTGCATCTGCATCTCCAACATAGTCCGTAGCCTCTCGTTTGTTCCAAGTAACGACGCTGACATGGCACGCCACCCAGGCCTGGTGCTTATACTGGGCAGGCTGGTGATGTTGCACCACGAGCACCCAAAGCGTAAAAGGACATCACCCACCTACCAGCGCGAGGAGGAGCGAGGCCTGGCCTGTAGCAAAGACGAGTGGTGGTGGGACTGTCTCTGTGCCTTGCACGAAAACACCTTGGTCACCTTGGCTAACATTTCAGGGCAGCTAGATCTGTCGATTTATCCTGAGAGCATCTGCTTGCCCATCCTAGACGGGCTTCTGCACTGGATGGTGTGTCCATCGGCGGAGGCCCAGGACCCTTTCTGCACAGCGGGCGGCTTCTCGTCACTGACGCCGCAGAGGCTGGTGCTGGAGTGCTTGTGCAAACTGAGCATCCAGGACTGTAACGTGGATCTGCTCCTGGCCACGCCGCCGCTCAGCCGGCAGGATCGTCTCTACGCAACGTTAGTGCGCCACGTTGGTGAGCGCAAGAGTCAGGTGTGCCGCGAGATGGCGGTGGCCGTCCTCTCCAACCTGGCGCAGGGCGACTCCACAGCAGCTCGCTCCATCGCCCTTCAGAAGGGCAGCATCGGCACGGTGATCGGCTTTTTAGAGGACAGCATCGCCATGGCGCAGTATCAGCAGAGCCCCCACAGCCTCCTGCACGCCGGACACCCGACGCACCCGGAGCCGCCCAGCATCAACATGATGTGCCGGGCTGCTAAAGCCTTGCTGGCAATGGCTCAGGTGGAGGAAAACCGGCCCGAGTTCGTTCTGTACGAGAGCCGGCTGCTGGACATCACTCTGTCGTCTGTGCTGAACTCGAGCGTAGTAGCCGTTATGTGCGAGGTATTGTTCAAGCTCGGACGCTCGTGA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG:

id description
K11653 ARID1; AT-rich interactive domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31586 lncRNA upstream 48715 34046590 ~ 34047774 (+) True G23462
TU31547 lncRNA upstream 208620 33885462 ~ 33887869 (+) True G23427
TU31509 lncRNA upstream 316589 33777942 ~ 33779900 (+) False cebpzos
TU31507 lncRNA upstream 316589 33778533 ~ 33779900 (+) True cebpzos
TU31468 lncRNA upstream 441500 33650637 ~ 33654989 (+) True G23367
TU31638 lncRNA downstream 54802 34247837 ~ 34286895 (+) True G23499
TU31850 lncRNA downstream 470029 34663064 ~ 34667031 (+) True G23684
TU31849 lncRNA downstream 482983 34676018 ~ 34679797 (+) True G23683
XR_002651946.1 lncRNA downstream 635801 34828836 ~ 34830350 (+) True LOC111196008
TU31902 lncRNA downstream 684258 34877293 ~ 34878915 (+) True G23719
XM_007255431.3 mRNA upstream 27162 34051253 ~ 34069327 (+) True LOC103030598
XM_022684761.1 mRNA upstream 27162 34051253 ~ 34069327 (+) False LOC103030598
XM_022684755.1 mRNA upstream 50104 33983194 ~ 34046385 (+) True LOC103030910
XM_022678137.1 mRNA upstream 131981 33894336 ~ 33964508 (+) True cnksr3
XM_007255437.3 mRNA upstream 297715 33789582 ~ 33798774 (+) True ndufaf7
XM_007255428.3 mRNA downstream 13308 34206343 ~ 34244662 (+) True LOC103029743
XM_022684788.1 mRNA downstream 14224 34207259 ~ 34245118 (+) False LOC103029743
XM_022684795.1 mRNA downstream 14224 34207259 ~ 34245118 (+) False LOC103029743
XM_007255424.3 mRNA downstream 69961 34262996 ~ 34269700 (+) True LOC103028593
XM_022684808.1 mRNA downstream 84066 34277101 ~ 34284584 (+) True LOC103028909
TU31552 other upstream 173638 33894375 ~ 33922851 (+) False cnksr3
TU31174 other upstream 1014627 33076654 ~ 33081862 (+) False LOC103037425
XR_002651887.1 other upstream 1255163 32837052 ~ 32841326 (+) False LOC103042732
TU31098 other upstream 1269550 32822344 ~ 32826939 (+) True G23086
TU30785 other upstream 2601591 31494345 ~ 31494898 (+) True G22834
TU31950 other downstream 1033814 35226849 ~ 35246299 (+) False trdn
TU31951 other downstream 1033814 35226849 ~ 35249655 (+) False trdn
TU32264 other downstream 2239173 36432208 ~ 36438970 (+) False ar
TU32543 other downstream 3445403 37638438 ~ 37654878 (+) True LOC111194342
TU32737 other downstream 3735320 37928355 ~ 37933989 (+) True G24345

Expression Profile