RNA id: XM_022685243.1


Basic Information

Item Value
RNA id XM_022685243.1
length 8696
RNA type mRNA
GC content 0.46
exon number 10
gene id znf292
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 38939398 ~ 38953445 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGTGACGACCGTTGTGCGTACGCGGCCGACCGGGATGTGAAGATGGCGGACGGGCAGGAGGACCTGGAACGGGGCGAGGAGAGCGCGACCGGGCTCGGGGACAAAGGCGCGGGCCTCATGGAGCTCACGGCACGCCTGGAGAGGCTGGAGGCCCCGCTGAGGCAGCGGGAGCAGCCCGCCGAGGAGTCCGCCGAGTACTGCCGGGCCTTCTGCACGACACTGCTGGAGTATGTAGGACAGTGGAGGAGTGATGAAGACCCTTGGCCTGTTCTGGAGGGATACGCTGTGGCTCTGCTGAGTTTTGCCCGAGCATCCACACACCTCTCCTCACAGTGCGAAAATGCTCCAGTCCTGATTGAGAAACTTTCACAGACCTGTGTGGAGCTTCTGCTTTCAATACATGTTGCTTTTCCAGAGGTGTTATGGAAGCAGTTTCGAAGCTCTGTGGAGATGGCTCATTCTCTCCTGCAGGAGAATGGCATTCCTCAGCTACGACTGCTTACTGCAATCACTCACGAACAAGGCGTTTGGGCTAACAGCACACTACTCAGCATTTTCAATGAAGAGACTCCAGAAGACAAAGTCTATGAGTTCTTTACTCATGAAGGCCCAGAGCTGCTGCACATGCGATTGAAGTACCTAATTAAAGAGAACTGCATGGACAAGGCTGCTCTGCTGGCTAAAGCGTGTGCAGATTTCCCTGAGTTTGACGGAAAGAGGGTCCAGTTCAGGCAGATTTATCTTGTTTGCCTGTGCACTGTTGCTCCACAGCAAATGCTGATGGAGGAGCTGTCAAAGGTGGACTGTCGGGATGCTTTGGAGATGATTTGTAACTTGGAGGCGGATGGAGATGAGAAAGGAGCTTTCACGATGTGCACAGGCTTTTTGAGCCGACAGCTCCTCCAGGAGGACACCTACTGCGCTTGGGAATTGACTCTCTTCTGGAGCAAACTTCTGAAGCGATTAGAGACTTCAGAGCAGGGTTTTTTAGAGAGGTGCAGGCAGATGTCTCGCCTGGCCAAAACTGTGTTTCACCTGCTGTTTTTCATAAAAGTGATCCAGTCAGAGTTGGACAAAACTGGATTGCCGGCCTGCATAGAGATGTGTGTGAGCGCTCTCCGAATGGAGTCCTGCGAAGGAACCAACAAGGCCACCGTCTGCAAAACCATCTCATGCCTGCTGCCTGATGACCTGGAAGTGAAACGAGCTTGTCAGTTGACTGAGTTTCTTCTGGAGCCAACAGTTGACTCATATTATGCTGTGGAAACGCTCTATAATGAACCAGATCAGAAGGTTGAGGAGGAGAGCCTTCCAATACCCACTTCTCTACGTTGTGAACTTCTCCTCGTTTTCAAAACCCAGTGGCCGTTTGACCCCGAGTTCTGGGACTGGAAGACACTAAAGCGACATTGCTTAGGTCTAATGGGTGAGGAGGCATCTATCGTGTCCTCCATTGATGAGCTGAACGATGATCATCCAGATGCTCTGGATGATTCAGGCTTGCCTCAGGAGTTCAAGGATGTTTCCGAGTACTTTCTGGATGCTACAAATGAACTTAAGGAAATCGAAGACCAGAagcagaaaaatagagaaattaAGAAGCTAAGGGAGAAAGGGTTTGTATCGGCTAGGTTTAGAAATTGGCAAGCTTACATGCaatattgtgttttgtgtgacAAGGAATTTCTCGGTCACAGAATAGTGCGTCACGCACAGACTCACTTCAAAGATGGATGTTATACCTGTCCAATATGTGTACAGACTTTTGAAACGAGAGAAACTCTAGACCCACACGTTGCGTCGCATGTAAAGATGTCTTGCAAAGAACGTCTTGCAGCGATGAAAACCACTAAGAAACTGGCAAATGAAAAACTTGCCATCCCAGCCATTTCTGCATTGAATGGCAAAAGCGGAGACAATCTGTCTCGAAAGACCAAACCGAAAAACTTAAATGGAGACTTTGATGGATTCTACAATGGAGATGGGATGGGCTCTCAGAAGGATGGTGCTGGAGCAGATGGGAAAGGTGGCAACATTTGCCCTGTCCCAAATTGCAGGAGGGGGTTCAAGTACTTTCGGAATCTTATTGCCCATGTGAAGGATCACGGGGACGTTGAAGAAGCTAAACGATTTCTTGAAATGCAGAACACAAAGATAGTTTGCCAATATTGCCGGCGTCACTTTCTTAATGTCAGTCACCTCAATGATCATCTTCAGGTCCATTGTGGCGCTAAGCCTTATATTTGCATTCAGGTGAATTGCAAAGCTAGCTTTGACTCTAATGCTGAGCTTCTTGTGCACAGAAAAAATCATCCGGTGTTCAAGGCAAAGTGCATGTTTCCTGGCTGTGGAACAGTTTTCAGCGAGGCTTTTAAACTCTACGACCACGAGGCGCAACATTATAAAACGTTTACGTGCAAAGTGCCTGACTGTGGTAAAGTGTTTCATTCTCAGTCTAAGTTAGATATGCACGAAGAGAGCCATAACGCTAAGAAAGAAGAAGTACATGATCCCGAGAGCCAAGTTGCTTCTTTTGAACCTCGTCCTGACCAGACCAGTTCACCAGCTGAGGCTGCTGACCAGCTTGACACCTTTGCGGATCCCCTGTTAAACTCCAGTTGTGCGTTGAGCCCTTCAAGTCAGATGGCCAACATGGTGAAAGTCAAGCACTCCATTGAAAGCATGCTCAGCAGTGCTGGTCCAGAAGCCACTCAAGCATTTGACCCTGGAACACTCAAATCTGAACCACCCGACCCAGATCTTAATGAACAACAGACCATGAACAACATGGAGACCCAGCTGATTCAGCCTCCTGTCAACCCTGCCATGTCTCATTTGACTGAATCCAGACCAGAGGAGTCCTTGCTGGACGTATTGATGAATGACCCAGTCCTAGCTTCATCTTGCCCAGTTCCCCAAACATCCTCCTATCAGAACATTCTAGAGGACTTTCAGCCACCCCCCTCAAGTGATGTTTTGCAGGGTCAAATGCAGACAACAAATTCTGTGTCGCACACCCGGCCTCCAACACTGTACAACAGTGCAAACACTGAATATGAACAATATAGTCCCAGTCCTGTGGCCCATGTTCAGACACCGTATCAAGTCCCGTTTAGAAATAGCATGGCATCCCTAGCACACACTACCCACAGTAGTACCCCAGTGATTCCAGTGCCTCAGAAGCTTCCTCCACAAGTCGCTTCTTTTCCCACCAACATGCAGGTTTCTAAAAGTAGTCCAGCTCAACCAGTGCACACAAATAGCACTGGACCagcagaggaggagaaagagaaattcAAGTGTGCTTTTGAAAATTGTTCTCGGGAATATTGTTCCTTCAGAAGCCTAACCAAGCACATGAAGGCACTTCACCCAGAGTTTTACACCCAGTGGAAGCTAGACAGAAAGAATAACAGGGCGCAACAAATCGCAAACAAATCTGCGTCACTAAATGGCAATCCTAATTCAGCTGCATCCTTGCAGAACAAGTTGGGTCCAAGAATTCCTGCTCAAACAGCACAAGTGCAAAACCTGACTTGCCACAATGCTTACTCAGCAAGCTGCCCAAAACCCAGTTATCCCTCTACCTCTTCCCACCTGCCGGCCTCCACTAGCCAGCCTTTCCCCAATCAAATGGAGAGTATATTGGATCCCATTGTGCTTTCACAGTTGGGACACACTGCAAGTGAGTCTCATATTGCGCTTGACCCTTCATGGAATTCTGTCTCTGTCAACAATTCGGGTCAACAGCGGACTGGCCAATCCCAAGCCGTGAATGCAAATGTTAATGTCCCTGCAAGTGGCCACCTTACCCCTCACATGAATATTGTTGCACAAGGCCAAGGTTCAGATAGTCAGAGGCAAGGAATTGCCTACCCTTCGGTGCAGATTCAAAGTAATGCCCCATGTACATTTGTCCCACCACAAACAGACTTTACCCAAAGGCTCAACAATCCAGCTGTAAAGGGTCACCACGGCAATTCACCTGCATCTTCCTATACTATGCCATCCAAGAGCAATCCTGTACCTTTTGTCAAACATCCTGAGTCTGTGGTGAAACTGGAGAGAACTTTATCACCTCCAGAGTGTTCCCAAGGAAGCACCTCTTCAGCTCTGTCCAATTCTCAAGATAGTGGTGGTGTCAGTTCCACAAATGGTGGCGACATTAAAAAAGtcaaaagaagcagaagaacaAAGTGGCCTGCCATCATCAGAGATGGGAAGTTCATTTGCTGTAGGTGCTTTAGAGAATTCCAGAGTCCTAAATCTCTTGGTGGACATTTATCTAAACGTTCTCACTGCAAAGGCTTTGATGATACGGACTTGAGTGCAGACCTGCCCATCTCATTTCTTGATCTGCTGAACTCTCCTGTGACCACACCTCAGCCCAGTCCATCTGGACATCTAAACTCCAGCCAGCCATTTCATGCAGTCAGCAAAGGTCCACTTGATCCAAAACTATTCCCCAATGTCACTTTCCTGCATGGTAAGGATTCCCCATATGCTAGCAGTGGTAAGCCCAACACTGAGGTCATCAAACAAATTTCCTCCAATCTGTGCGAGTCTGTTGGAGTTGGACAGCAGACATTTACCAATGCATCTGTCCCTTACCCTCAAGATGGGCAAAGCAGTGTGATTCAACACActgggaaaatcaaagaaaatattAGTCAGCATCAGATGAAATATACACAGCCCTGCAATCCCTTGTATTCTGACAGCAACCTTTCAGACCCCCTTCTTTCTCGTTTGATGGATGAAGATATTTCTTCTGCCTCTTGTAACAGAGCTCCCACTGACCAAATTGACAAAATTCTTCACAATGAAACTCTTAACAAAATGAAGGAGCTCACAGACAGATCTACCAATATGAACACAAGTGGGTTATCTAATGATGGTCTTCTGGCTGCCATGGCTAGTCTTGCTCAAAATTTGGTGTCTGAAAAGAGTGTCAAGGAAAAACTTAGAGAGCAGATACTAGCTGGAGATTTCCACAAGAAAAGTAGTGTGTGTCCAGGTCAACAGTGCACAGTCAACAGTGCTGACAGTGGAAGTTTTCAGAGCTCAGCTGCCTCAAGTCCTGCAATGGGCGTTCCTCAGCAAGCAACTCCTGTGATCCAAAAGGTTCCTCAGAGTGACCATCATTTTGAAAATAAACCTTTCTCTGAGCAAACTAGGACTGTTACAGCAGCTGAAGGCCAAGCACAAATCTCTGCGGCATCTGTTTCTACAGACAGCATCGATGATGCTGTATCCCCTAATTCAGTTATACAGCAAGATCATGAAGTGACAGAAATTCAGAAAGCACTTGAAAGATTGAATTTGGATAGAGAAGTCCCTGAACAGGAAATGGTCATTAGTAGACCTTCAGAAACATCTGGATTACCTAAAACCACAGATGCAATGAATCCCAGAGATCCCGGAGATGTTATGAATCCCAGAGATGTTATGAATCCCAGAGATGTTATGAATCCCAGAGATCCTATGAATCCCAGAGATCCCAGAGATGTTATGAATCCCAGAGATGTTGTAAACTCCACAGATAGTATGAGCTCCACAGATGCCATGAACCCCACTGTCGAGAGACCTGGCTACCTTTGTGACACCAGTAGTTGTGGTTACAGAGCTATGACAAAGGATGCCATGTTTAAACATCTCAGCAAACTCCATAACTACACTAAAGACATGCTCAGTCAGTACAGGAAAGACCAGGTTAAGTTAGCTCCTTTTATTTGTCAAGTATGTAACAAAAATTTCACGCGAAACTCAAACCTGAGAGTCCATTATCAAAGTGTTCACAGTTTTTCACAAGAGCAGATCATGGAGATAAGAAagaagcaacagcagcagcagcagcaacaatgtCGAGGATTATTGGAGGGTGAAGGTAGTCCTTGTCCCACACCAAACATCACAGATTTGCTTGGTTCAAATGATGGTCCAGTACAACAGAGAACCTCTAATATTGGGCAACAGAAACACATTGATGGTACTGGCCAGAAAGGCCTTGTGATTGCTAATGAAGGAATTAAATCTGAATTCGGTCACCAGACTTTTGTAAGGCAACCTTGCGTTACTCCATTGAACCGTAATCTCCCAGGGACTATGCACTCAGCCCCATCCAGTAGTAAGACAGCCATTTATCCATCAGTGATAAAGTCTGGTCCTTCCTTGATGACTGCCTCAAGCATGGAGCAACAGTTAAATGGGCAGTTCGTGCCAAGACCATTTGCACCTAGCCAGAACCTCCATCAGACTCCATCTGGAGGATTTCTGCATACAGGTGCACCCGCAGGTGCACCCCTAGAGGCCCAGACTACAGCACTGATTGCCTCGCCAGGTACTCTGTCCCAAGACAAACAAGCTAAACTGGTAAAACCTCGACCACCAAAACCAAGGGAAATACCCAAAAAGCCTAAAGAGAAGAAAACGGACCCAGATGATGTTTTTAGCCCCTACAGGCCTTATCGTTGTGTTCATCAAGGCTGCGTTGCTGCTTTCACTATCCAGCAAAATTTGATTCTCCATTACAAAGCTGTACATCAGCCTGACCTTCCTAAATTTGAAGTCAATAATGACGAcgacgaagaagaagaaaatgacgAAGATGAAGAGACTAACGAAAACGAGGAGGATCATGACCTACCTGACGGTGAAGTAGCTGAAGTGGAAGAGCTTCGGTGTCAAGTCAAAGACTGCTCGAGAATATTCCAGGTGGTTACAGACCTGCTGCAACATTATTTGCAGCTCCACAAGCTGAGCCTGGACTCAGCGGGTGCTATGATGTcttgcataaatttgggcaggTTTCAGTGTGACCAGCCAAATTGTACAGTTACCTTTACAGCATTCTGGAAGTATATTGGCCACATTGACAAAGAACATAAGGATGCTAAGGTCTCTAAAGTAGAGGCTGTAGAGGGACTGTTCCACTGTGACGTCGAGGGTTGCGACTGCGCTTACTCAACACGGTCAAATCTACTGCGGCACACCATGAAAAAACACCAGGATATTTACAAACTCCAGCTGATGAACTCGAAAGGTGTCAAACTTGGTCGTCCTCGAAAGAACCCTTATCCTTTCCTTGAGAAGGAAAATAGAGAAATTAACAGGAAACTTGAAAAGAAGGGGCTagataagaagagaaaagaaaaaaagaacaaccactggacaaaatatggaaaacctattttaaaaactaaggAGGAGGCCTCTGCCGTGTGCACAAAGAGGTTTCCGTTGCAGTACCCCTGCATGATCAAAGGCTGCGAAACAGTGGCTAGCTCTgaaagaaatataataaaacattacgTCCAGCATGGCCTGCCAAAACAGTATTTGGAGGAGCAAAGGAGCAACTACATTCACTGCAAGAAATTGCCCCGCTCAAAGTACAAGCGCATAACCGCGAGGAGTGACGATACAGATAAGTCAGAGGAAAGCTCTGTCGAGACGTCAGAGAACGAGAAGCCTTCAAACAAAGCGCCTAGGGAGTCTGAGTTTTCAAAGCTGACTTCAGAAAAGGAGAGCACAGAAGACGCATATGTTTCAGACAGCAAGCCTTCCACTGACGCGAGCTCCGATATCTCTGTGGTGGTCAAGCGCAAAAGAGGACGTCCACGCAAGTTGGCGCATAACAGAAACAAGCCGATTACTCACAAGAGAGTGACGAGGTTAAGAACCGCGCACAGTTATTCTGTTAACTATGCCGACATCAACTCTGACTCCACGTCGTCCAGCGCCACACTGGCGCAAGAAGAAGCCTGTGAGGGTTCTAAGATGAGCACTTTTAAGCCACTGGGCTTTGAGGTGTCTTTCCTTCAGTTCCTGGAGCAGTCTAGACAGCCATTAGGAAAGAGGAAAGCTTCAGTGACCTTGGACGCCAACATGTACAAGAGACACCCTACTTTCCAGTTAAAGACTGCCTCAGTTGTGTGCAGTAGGTCTGATGTACTGAAACTTGTTGAGTTCAAAAACCCTCAAAAGCTAACCTGTCTTAGTAACGTGAAGTTTGAGGTGCACCGAAGTTTTTCAAGTGTATTTGAACTGTTGCTCAAACAGCTGCATGAAATGCGCCCTGCTGTGGTAATTCAAAAAGAGGAGTCATCTGCTGATAAAAGTTAAGGGACGGCACACGGGGGCATGAAATGGTTCAAAAGTGAGATGGAATCTGTATTTGGACAATAAATGTACTGATTGAGTAGTGTTTGTCGAACAAATTgctggaatgtttttttttttttctttgttttttttgtttgtgaaaCAGTACATGCCCTTGATATTAATAGACACTCGCTAATCACTGAAGAGAACTGTGTGTATTAAACTCATTTTATAGCTGATGACTAAAACAGCAGATAATTATATACCTCTGAAGCATGCCCTTATAAAGCTACACATATTGTTGCCTTTGGAGATGAACTTGTAAAGGAACAACAAaggttttactttttaattttctacAGGACTCTATTTACTTTGAAAGTGAAATAGCCCCTGTTCCAGTTGGATTGGAAATTctgtagtgcagtgtgtagatGATAACTGTTTTGGTCTCGTTGAACTTGCATTGTAAATTTGAAATCGTCTATAATGTTGTCTGTGTGCACATAACGGTTCTCTGTATAATTACTGCCACCAGCAGTGTGTACCTTAAACAACTGAGACCAATTTATTACAGCTTGCCTTTTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33219 lncRNA downstream 38024 38900985 ~ 38901374 (-) False LOC103024598
TU33228 lncRNA downstream 52256 38886933 ~ 38887142 (-) True G24698
TU33227 lncRNA downstream 52532 38886447 ~ 38886866 (-) True G24697
TU33213 lncRNA downstream 54789 38884088 ~ 38884609 (-) True G24688
TU33224 lncRNA downstream 56233 38882899 ~ 38883165 (-) True G24694
TU33250 lncRNA upstream 6237 38959682 ~ 38962053 (-) False G24716
TU33249 lncRNA upstream 7961 38961406 ~ 38962053 (-) True G24716
TU33426 lncRNA upstream 95312 39048757 ~ 39048957 (-) True G24841
TU33427 lncRNA upstream 104122 39057567 ~ 39057901 (-) True G24842
TU33428 lncRNA upstream 104560 39058005 ~ 39058566 (-) True G24843
XM_007259893.2 mRNA downstream 12405 38925623 ~ 38926993 (-) True smim8
XM_022685175.1 mRNA downstream 16481 38887626 ~ 38922917 (-) True LOC103024598
XM_022685183.1 mRNA downstream 18199 38887626 ~ 38921199 (-) False LOC103024598
XM_022685186.1 mRNA downstream 23957 38887626 ~ 38915441 (-) False LOC103024598
XM_022685168.1 mRNA downstream 61679 38867410 ~ 38877719 (-) True rpf2
XM_007259892.3 mRNA upstream 3594 38957039 ~ 39011092 (-) True htr1e
XM_015608507.2 mRNA upstream 145981 39099426 ~ 39128033 (-) False bub1
XM_007259887.3 mRNA upstream 145981 39099426 ~ 39128032 (-) False bub1
XM_015608508.2 mRNA upstream 145981 39099426 ~ 39128032 (-) False bub1
XM_007259886.3 mRNA upstream 145981 39099426 ~ 39128032 (-) False bub1
TU33229 other downstream 12486 38925696 ~ 38926912 (-) False smim8
TU33230 other downstream 12486 38925696 ~ 38926912 (-) False smim8
TU32960 other downstream 661806 38275472 ~ 38277592 (-) False ndufaf4
TU32826 other downstream 995052 37938829 ~ 37944346 (-) False fam76b
TU32828 other downstream 995052 37938829 ~ 37944346 (-) True fam76b
TU33468 other upstream 320190 39273635 ~ 39346869 (-) False LOC103043888
TU33473 other upstream 356285 39309730 ~ 39324690 (-) False batf
TU33467 other upstream 385581 39339026 ~ 39346869 (-) False LOC103043888
TU33469 other upstream 385581 39339026 ~ 39346869 (-) True LOC103043888
TU33508 other upstream 501791 39455236 ~ 39458189 (-) True G24903

Expression Profile