RNA id: XM_022685790.1


Basic Information

Item Value
RNA id XM_022685790.1
length 3940
RNA type mRNA
GC content 0.47
exon number 29
gene id LOC103038512
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 41588752 ~ 41621272 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCGCCGGGCAGGTAGAGGCAGGGCTGCTGGAGTGAAGAGGTGATCTGAGGGAGTGTAATGGAGTGAACAGAGAGCTGGGTGAGCTCTGTGCGCTTCTCTCTGAGGGAGATGGAGTTTGTCATGCCGGACCTGctgtcagtgtgtgagttcaTGGACATTACCAATGAGGACTATAAAGCCCCCACCACCTCTATCTTCACCACCCGGATGACCCACTGCCGCAACACAGTGGCTGCactggaggagGCTCTGGACGCAGATCGCAGTGTTCTGAGCAAAATAAAGAAGTCTGTGAAggccataaacagctctggtctCTctCATGTAGAGAATGAAGAACAGTATATCCAGGCTCTAGAGAAGTTTGGAGAGGCCTGTGTGTACAGAGACGACCCAGATATGGGAGCGGCCTTCATTAAGTTTTCTGTCTTCACcaaagagcttacagctctcTTCAAGAATCTGCTGCAGAACATGAGCAACATCATCACTTTTCCTCTAGACAGTCTGCTGAAAGGAGACCTGAAAGGAGTTAAAGGGGATCTAAAAAAGCCTTTTGATAAAGCCTGGAAGGACTATGAAACCAAAGTGAATAAGATCGAGAAGGAGAAGCGGGAGCACGCCAAGCAGCATGGCATGATCAGGACAGAGATCAGTGGAGGAGAGATTGCagaagagatggagaaagagaggcgCGTCTTTCAGCTGCAGATGTGTGAGTATCTTCTCAAAGTGAATGAAATCAAAACCAAGAAGGGGGTTGACCTGGTGCACAATCTTATCAAGTATTTCCACGCTCAGTGCAATTTCTTCCAAGATGGGTTGAAAGTTGTAGAGAATCTGAAACCAGCTATGGAAAAACTGTCCACAGACCTGACAGCAATTAAGCAGGTGCAGGATGGAGAAAGGAAGCAGCTGACTCAACTTCGAGATGTTCTGAAGTCGTCTTTACAAACAGACACTAAAGATGACTCTCAGGGTAAACAgaacacaggctacagtctgcaCCAGCTACAGGGCAACAAGGCTTTTGGCACAGAACGCTCCGGGATGCTCTCCAAGCGCAGTGAAGGGCTGAGGAAAGTATGGCAGAAAAGGAAGTGCTCTGTGAAGAACGGCTATCTGACCATCTCACACGGAACACCAAACGCACCACCAGCCAAACTCAACCTGCTAACCTGCCAAGTGAAATGCAACCCCGAGGAGAAGAAGAGCTTTGATCTGATATCTCATGACAGAACATACCATTTCCAAGCAGAAGATGAATCAGAATGTCAGATATGGGTGTCGGTTCTGCAGAACAGTAAGGAGGAGGCCCTGAACAATGCCTTTAAGGGGGATCAGGACGAGGGAGAGAACAACATCGTTCAGGAACTCACCAAGGCCATCGTGAGCGAGGTGAAGAGGATGAGTGGGAACGATGTGTGCTGTGACTGCGGAGCTCCAAATCCAACCTGGCTATCCACAAACCTGGGTGTCCTGATCTGCATCGAATGCTCTGGAATCCACCGGGAAATGGGCGTGCACCACTCCAGAATACAGTCTCTTACTTTAGATGTGCTTGGGACGTCAGAACTGTTGCTGGCCAGAAATGTGGGCAATGCAGGCTTTAATGACATCATGGAGGCCAAACTGTCAGGAGAGGACATATCCAAACCAACACCCTCTAGTGACATGCAGAGCCGGAAAGACTTCATCACAGCTAAATACACAGAGAAGCGATTTGCCCAGCGCAGGCGTGTGGATCCGTCTGCTAAGCTCCGCAGTCTGTACGATGCAGTGAAGAGCCGGGACATCTTCTCCCTGCTGCAGGTGTACGCAGAGGGAGTGGATCTAACAGAGACCTTATCCTTACCCAACGAACATGAGCCGGGTGAGACCGCGCTGCACCTGGCGGTGAGAATGGTGGACAGAAACTCCCTCCACATTGTAGACTTTCTTGCACAGAACAGtgGGAATCTGGACAAGCAAACAGGAAAAGGAAACACAGCGCTGCACTACTGTTGCCTGACAGACAGCAGTGAATGTCTGAAACTTCTGCTACGGAGCAAAGCCTCCGTCACCATGACCAATGAAGCTGGAGAGACTCCTCTGGATATGGCCAGGCGGCTGAAGCACACACAGTGTCTAGAGCTGCTGACCCAGGCGCAGACTGGCAAATTTAACGTCCATGTGCACGTGGAGTACGAGTGGTGTCTGCAGAATGAAGACCTGGATGAGAGTGATGATGAAATGGAAGATAAGCCTATCCCTCAAAAGCGTGAAGAACGTCCTGTCAGCTGCTTTATTCCTAGCAGTGGCCCCATGCAGCCCAATATGGCGGCCCTGGCACGAGATGTGGTCAGTGCGGTTCGGGAAAAGCAGAGGGGCTTCATCCCCAGTATGATGTGTAATGAAACCTACGGGACTCTAATGAACAGCCCTCCTCCATCTAACACACTCCCCATCAATTTACCACAGCTACCCCCACGCAACACTCTCACAGgaaatGGGGGCTGGAAAAATGTGGAGGGAGTAGGGAGACAGAGATCTTCATCAGATCCCCTTAACCCCACCAGTCCAGAAAGTAACAGTTCAGACTATGTCCTCCCTCCCGCTGCCCCGCCTCCTCCAGTAATAAAGAAGCCTATCCCCACGGAGCCTCGGACCCACACTAAGAATGTTCCTCTGCCTTCAGTGCCACCTGCCATGCAGATGCCATCTGTTCCCCCAGTTCCAAACATTCCTACTCCACCTTCATTCATTCCAATACCTCCTCCTCCCCCAGTGCCCCCTGCACCCCCGTATAAACCTGCTGCTCCGCCCGTACCCTACCAGCCCAGAGGCCCTGCTCTCAAACCTCCCACAGGAGGTCTTCCAAGAACACAAACAAGCAGACTTAAACCCAATCCTGTATCAGAAACAACAGAAAAGGATGGTCCTCCCCCACCTCGTAATCCTGCAGCCACATCACCTCCAGCCCCACCCCCAGTGCCTAAGCCCAGAGCGACCCAGGCGaaacAGAAACCTAAACGAGTAAAAGCCATCTATAAGTGTAAAGCTGATAACCCAGATGAGCTGACCTTTGCTGAGGGAGAGGTGATCATAGTGGATGGAGAGGAAGACAAGGAGTGGTGGGTGGGCCATATTGAAGGGGATCCTACCAGAAGAGGAGTCTTCCCTGTTACATTTGTGCACTTCATCACTGACTGATGAAGTCAGTAATCAGTGGACACTGAGActggcaataaaaaaaacaaagacggACGAGCAGAAGATTAGGTTATGTTCTCAGCtgtaaaagttatttttcaGTGATGACCTCATGTAAGATATCtgcaaaattatgtttaaacattttctaagaCAAATAAGAGAATAGCTAAATGTGTGTTTGCTTTTATTGTTGGTCATCTCACTCCAgtgcaatataatataattaaatcttAATGCTTTGAGCAGGGATTCATCATACTTCAGATAAAATGGTTGTGGCCTTATCACAGTAAAGTCCGAATATCTGCTGGATTCTTATTCAAGTTTTTAGAGAGCATTTTGGAGTTTGGTTGCAGAGCAACTCtatgtgtatattttaattgGATGAACTCTCAAGCACTGTATCTCTTAGACTTGTTGAAATACTTCCCCATTGCAGTTCTTGGACACAGTCAATAAGTTTTTGCATCATTTTTAACAAGtgtggatttattttatttttggaaatCATAATTTGTGACAAAAATAACAGAACGTGTCTTTAAAACAAGTAgtactgtgaaaaatatttacaaatacaaacagTATCAGTTTTTAATGCCAACAAATAATACTTCCTATTGATGCCATTACTGACTCAATCAGTATtgagtaaatgtgttttaataaatgtttaaacaagCCATTGTAATCTCAGCACACtgactgtaaatgttttttctgcataaaatgaaattatgaaCTA

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K12488 ASAP; Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34157 lncRNA upstream 294 41588099 ~ 41588458 (+) True G25426
TU34137 lncRNA upstream 11114 41576283 ~ 41577638 (+) True G25407
XR_002652130.1 lncRNA upstream 69457 41507988 ~ 41519295 (+) True LOC111196462
TU34066 lncRNA upstream 91013 41495866 ~ 41497739 (+) True G25355
TU34062 lncRNA upstream 102484 41485489 ~ 41486268 (+) True G25351
TU34161 lncRNA downstream 3509 41624781 ~ 41632161 (+) True G25428
TU34201 lncRNA downstream 112731 41734003 ~ 41734204 (+) True G25458
TU34202 lncRNA downstream 113315 41734587 ~ 41735710 (+) True G25459
TU34247 lncRNA downstream 234687 41855959 ~ 41870007 (+) True G25493
TU34246 lncRNA downstream 239379 41860651 ~ 41870007 (+) False G25493
XM_007235252.2 mRNA upstream 21592 41547974 ~ 41567160 (+) True LOC103041996
XM_007235253.3 mRNA upstream 43255 41534105 ~ 41545497 (+) True ywhaq
XM_022685688.1 mRNA upstream 160582 41403996 ~ 41428170 (+) True fmn1
XM_022685682.1 mRNA upstream 308815 41254714 ~ 41279937 (+) True aven
XM_007235264.3 mRNA upstream 339181 41244537 ~ 41249571 (+) True emc7
XM_007235243.3 mRNA downstream 13683 41634955 ~ 41705390 (+) True LOC103039741
XM_007235245.3 mRNA downstream 87498 41708770 ~ 41732318 (+) False kidins220
XM_022685870.1 mRNA downstream 87498 41708770 ~ 41723598 (+) False kidins220
XM_007235247.3 mRNA downstream 87499 41708771 ~ 41732318 (+) False kidins220
XM_022685857.1 mRNA downstream 87499 41708771 ~ 41732318 (+) False kidins220
TU33591 other upstream 1763034 39819276 ~ 39825718 (+) True G24972
TU33356 other upstream 2190923 39393842 ~ 39397829 (+) False eif2b2
XR_002652014.1 other upstream 2247781 39325083 ~ 39340971 (+) True LOC111196173
TU33254 other upstream 2542971 39045170 ~ 39045781 (+) True G24719
TU33086 other upstream 2641530 38939357 ~ 38947222 (+) True G24583
TU34411 other downstream 770368 42391640 ~ 42392938 (+) True G25601
TU34410 other downstream 770373 42391645 ~ 42392938 (+) False G25601
XR_002652205.1 other downstream 876505 42497777 ~ 42516557 (+) True fgfr1op
TU34713 other downstream 1739197 43360469 ~ 43363444 (+) True rps29
TU34766 other downstream 1800499 43421771 ~ 43422046 (+) True G25879

Expression Profile