RNA id: XM_022686245.1


Basic Information

Item Value
RNA id XM_022686245.1
length 2188
RNA type mRNA
GC content 0.47
exon number 13
gene id LOC103041928
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 43044192 ~ 43051887 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tacactcacacacactcactcactcacaccgctacacacacagtgtgaagTTTACCGGCgggatcagcagcagcagcaggaggaacaATGCGGGCTGTGCTGGGTGTGTTGGCGTGCTCTTTGACTGTCCTCTCTGTCCACGGGCTCTACTCTGCCAGTGATGATGTGATCGAGCTAAATCCTTCAAACTTCAACAGAGAAGTTCTGCAGAGTGACAGTCTGTGGCTGGTGGAGTTTTATGCCCCATGGTGTGGGCACTGCCAGAGTCTGGTCCCAGAGTGGAAGAAAGCAGCTTCAGCATTGAAGGGAGTTGTTAAGATTGGAGCTGTTGATGCAGATCAGCATAACTCACTGGGAGGCCAGTATGGAGTCCGTGGCTTCCCAACCATCAAAATCTTTGGGGCCAACAAGAATAAGCCAGAGGAATACCAAGGTGGTCGCAGTAGTCAGGCTATTGTGGACACAGCTCTGAATGCTCTGCGTTCCATAGTCAAAGACAGGCTGAGTGGAAAGACTGGAGGCTCTGACTACAGCAGACAGAGTTCTGGTGGTGGCGGAGGCAGCAGTGGTGGCAGTAAACAAGACGTGATTGAACTGACTGATGATAACTTTGATGAGAAGGTGTTTGGAAGCGATGATGTTTGGATGGTGGAGTTCTTTGCTCCATGGTGTGGACACTGCAAGAAccttgAGCCTGAATGGGCAGCTGCTGCTTCTCAGGTGAAGGAGCAGACCAATGGCAGAGTGAAGCTGGGAGCTGTAGATGCTACCGTCCACCAGGGCTTGGCCAGCCGCTATGGGATTCGAGGATTCCCTACCATTAAAGTCTTCCGTAAAGGAGAGGAGCCAGAGGACTACCAAGGTGGACGCACTCGCTCAGACATTATTGCCCGTGCCCTGGACCTTTACTCAGACAATGCTCCTCCCCCAGAAATGCTGGAGATTCTGAATGaagacattttgaaaaagaCTTGTGACGACCATCAGCTTTGTGTGATAGCTGTGCTGCCTCATATTCTAGACACAGGTGCAGCTGGCAGAAATGGTTACCTGGaagtgatgatgaagatggctGAGAAATACAAGAAGAAGATGTGGGGATGGCTGTGGACTGAAGCTGGAGCGCAGATGGATCTGGAGGCTTCCCTGGGGATCGGTGGTTTCGGCTATCCTGCCATGGCGGCTATCAATGCTCGCAAGATGAAGTTTGCTTTACTGAAAGGCTCGTTCAGTGAGACTGGAATCCATGAGTTCCTGAGGGATCTCTCTGTTGGACGAGGCTCAACTGCCACAGTAGGAGGCGGGGCTTTGCCAAAGATCAACTCTGTTGAAGCCTGGGATGGGAAGGATGGAGTTCTGCCTGTGGAGGACGATATTGACCTGAGTGATGTGGATCTGGATGATCTGGACAaggatgaattatagagttcaCTGACTGGGAAGGATGGTCTCGTTTGGTGTCAGCACCACACAGACTCAGCCCATGACTCACTTCTCCTCTCCTGTGGATGAGGGGATAACTTGAACAATAAGTTACTGTACACTCTTTAAACGAAGATTTGTGTTGCTTTTAACTTCTTCTCTCTGGTAATCTGAAGTGTGGCGGGATCAGGGATTAAATCGTATTGTTAAACTCTCTGTCACAGGTCTGCTTTTCATGTGATTGGTTGGCTGATTGAATCTCCCTGGAAGAAAGGAAAGCAGGATTGTTATGTCacttttttttgtcctgttgtTCCAcatccaaaacataaagctcCAAAATGAGGTTGATTTTCctcagttctgaaaaaaaaaaatcccactcaGATCAGTACCCTCACCCagtgttttgttcatttttgttccacttatggcagtttttttctgcaaatactaACTAAAGCGGAAGAGGAAGCTAGGCTGCCGGATATATGCTGTAATGGTTTATATCCTTTGTCCTTAACTTAGCCTACTGCCATGTAAGGGGATTGTCTTTAAAGCAGAGTTTTGCAGACAGTCCTATTCATTTTCATTCTCCATATGAGTGTGGCAAATATATTTGAAAAGGAAATCGGTGACTTGGCATGCCAGCTTTTCATTGTGTTTGTGCTGGACAGGAAATGCCGTAGGAATTGTGTAGATTTTTCTTACACAACTTTGTTTTGACATGTTTTTGttatgaaaattaaaaaaggagGAGTCCAAA

Function

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process
GO:0006662 glycerol ether metabolic process biological_process
GO:0006457 protein folding biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0015035 protein disulfide oxidoreductase activity molecular_function
GO:0003756 protein disulfide isomerase activity molecular_function

KEGG:

id description
K09584 PDIA6, TXNDC7; protein disulfide-isomerase A6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34483 lncRNA upstream 284221 42753358 ~ 42759971 (+) True G25662
TU34478 lncRNA upstream 314683 42727634 ~ 42729509 (+) True G25657
TU34468 lncRNA upstream 325803 42717658 ~ 42718389 (+) True G25647
TU34471 lncRNA upstream 438064 42605901 ~ 42606128 (+) True G25650
TU34443 lncRNA upstream 524250 42519641 ~ 42519942 (+) True G25625
TU34682 lncRNA downstream 207733 43259620 ~ 43262099 (+) False LOC103026014
TU34702 lncRNA downstream 277640 43329527 ~ 43330604 (+) True G25828
TU34701 lncRNA downstream 278128 43330015 ~ 43330604 (+) False G25828
TU34698 lncRNA downstream 280687 43332574 ~ 43341729 (+) False G25828
TU34710 lncRNA downstream 299008 43350895 ~ 43356027 (+) True G25834
XM_015608738.2 mRNA upstream 9800 42922593 ~ 43034392 (+) True otof
XM_022686227.1 mRNA upstream 15581 42922593 ~ 43028611 (+) False otof
XM_022686231.1 mRNA upstream 15581 42922593 ~ 43028611 (+) False otof
XM_022686241.1 mRNA upstream 15581 42922594 ~ 43028611 (+) False otof
XM_022686215.1 mRNA upstream 15749 42922593 ~ 43028443 (+) False otof
XM_007238371.3 mRNA downstream 40278 43092165 ~ 43111188 (+) True LOC103031260
XM_007238370.3 mRNA downstream 63891 43115778 ~ 43135388 (+) True LOC103030938
XM_022686287.1 mRNA downstream 84896 43136783 ~ 43171235 (+) True LOC103030407
XM_022686298.1 mRNA downstream 84896 43136783 ~ 43171235 (+) False LOC103030407
XM_022686292.1 mRNA downstream 84896 43136783 ~ 43171235 (+) False LOC103030407
XR_002652205.1 other upstream 527635 42497777 ~ 42516557 (+) True fgfr1op
TU34411 other upstream 651254 42391640 ~ 42392938 (+) True G25601
TU34410 other upstream 651254 42391645 ~ 42392938 (+) False G25601
TU33591 other upstream 3218474 39819276 ~ 39825718 (+) True G24972
TU33356 other upstream 3646363 39393842 ~ 39397829 (+) False eif2b2
TU34713 other downstream 308582 43360469 ~ 43363444 (+) True rps29
TU34766 other downstream 369884 43421771 ~ 43422046 (+) True G25879
TU34767 other downstream 372505 43424392 ~ 43424906 (+) True G25880
TU34777 other downstream 438899 43490786 ~ 43494315 (+) False LOC103033920
TU35893 other downstream 3476508 46528395 ~ 46530387 (+) False fau

Expression Profile