RNA id: XM_022686292.1


Basic Information

Item Value
RNA id XM_022686292.1
length 2984
RNA type mRNA
GC content 0.49
exon number 12
gene id LOC103030407
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 43136783 ~ 43171235 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCTGGTGGAATATGACTATATCACTGTCTTTCCTCCTTACTCCACCCCAAATCAAGTCACATGTCTGGAATGTATAGCAACAATCGGAAGAATAGGAACTGTACCTCATGATTTTGGTCTTAAACTTATCAGCTCCAACAGAGACTGCTTCCACCAGCCTTACTCACCCTCCAGGGAAGAACCcgcccaactcatcccaacatGTGGTGGCCTGTGCAGTGCATGTTGACTGAAGCaactggcagtgtgtgtgtgtgtgtgtgtgtgtgagtgagtgtgcaaGACGCAGCCAGACAGTGTGAAGCTGGATGTGACTAAGTGGACAACTTTACTAAGTCTTCTCTACAAGCCTACTACCTGATTCCTGACAGAAAGGTAGCTTTGAGAAGGGGGGAAGGTTCTCAAAAACCTCTTTGACTAAAGGTAGGCTGGTGAAAACTTCAAGAAGGCCATGTGACCGTGGAGAATGAGAAGAAGAGCAGAAGAAGACATGTGTAGGTTGCGTTGAAATGGACATAAAGGCAGGATGATGGGTCTCATCACTGTAAGAGACGTCTACCGTTAGAATTTCAGCTGTGACCGAAATACACAGGCCCTCAGGATGTtccagaggaagaagaagaagaggaagatagaGATTTCTGCGCCCAAGAACTTTGAGCACCGGGTGCACACGTCTTTTGATCCTGCCAGAGGCTGCTACGTAGGACTTCCACCGCAATGGCAAAGTGTAATAGAAACACTGAGGAGACCCAAGCCTGTGGTGGATCCATCCAGGGTCACTCCTGTGCGACTCAAAGCAGAGAagACCATTGTTCGAGGGAGTTTTATTGGACATGGAGACTACATCGCTGCGGCGATTGCCGAAATGAGCCGCCTCTCTGTCACCAGCTCCAACTCGCTCAGGAGGACCAGTCCATCCCTGCGTAAACGAGCCCAGTCCATGGGCCGTCTGGGTGAGCTGGCTGAGGGGGACACATATCAGTATCAGGAACTGAACAAGAACAGACAGCCGAACGGACAGCCTGCCCCAGACTGGCACAATAGGGCACGGCAAGCCCATAGCGAGAGTGGAAGCCCGTGGCCCGGTGCCAAAAAGAGTGCCACTCTGCAGCCTAACGGCATGCCACCCAGAGCCAAGTCTATTATCGAAGTCAGCACGACGTCTGCAGAGCAGCCTCGGCTCATGCCAAGAGACATCTTAAGCTTACCTGGAGTTGATGAAACAGAGCAGTACGTTCACAGCGAGAGCGTAAGGCCTCATCAGCCGAGCTTGGCTCAGAGAGACAGTAAGACTAATCCCAGACCAGTGTCCTGCATCTACAACACTCCTACATTACACCAAGGACCAAAGATCAGCCCTAATCCCAGGGCGACTTCCAGCTCAGAACTTCCCGCGGTCTCCACAGACACCCCAAGGAGGCCCTACTCCACCTATGACATGAAGACAAATGTATTTGGTTTCTCAGCCATGACGAAACCCAATGGTACCAGCAGCCCAAAAATAGGACATGGCACACAGTCGCACTCCCCTCTCCAGCACTCATCGAGCTGTACGATAGGTGTTTCTCCCATTAAAGCCTCAATACCACCCATACAGAATAGTCCCTCTCAGACCCGGCCCACCCCTGCTGGTTCTCCTGCCGCCAACGTGCCCCCGGCCTCCTCTCCCTGTTTGAGAACTTCTCAGCCTGCCACCATCATCTGTGAGCAACCCAAGATCACTCATGCACAGTTTAAGGCTGCTCTGCAAATGGTGGTGGATAAGGGGGACCCTCGCATGTATCTGGAGAACTTTGTGAAGATTGGAGAGGGCTCCACGGGTGTCGTCTGCATCGCACGGGAGAAGCACAGTGGGAAACAGGTAGCAGTGAAGATGATGGATCTGAGGAAACAGCAGAGAAGAGAACTGCTCTTTAATGAAGTGGTCATCATGCGGGACTACAGGCACAAGAACGTGGTGGAGATGTATAAGAGTGctctggtggaggaggagctgtGGGTCATAATGGAGTACCTGCAGGGCGGCGCTTTAACCAACATAGTCTCTGAAACCAGgctgACAGAAGAGCAGATAGCTACAGTCTGTGAAGCTGTGCTACAGGCTCTAGCCTATCTCCATGCACAGGGTGTCATCCACAGAGACATCAAGAGTGATTCTATTTTGCTGACCCTGGATGGGAGAATCAAGCTGTCAGACTTTGGGTTCTGTGCTCAGATCAGTAAGGACATCCCGAAGAGGAAGTCTCTGGTTGGAACTCCCTATTGGATGGCTCCAGAGGTCATCTCCAAAACCCCATATGGCACAGAGGTGGATGTATGGTCTCTGGGGATTATGGTTGTGGAGATGGTGGACGGGGAGCCTCCATATTTCAGCGACACACCTGTAGCTGCTATGAAGCGGTTAAGAGATGAACCAGCACCTTCTGTCAGGAACTCAAGCAAGATCTCACCAGTGTTGAAAGACTTTTTGGACTCCATGCTGACCAGGGACCCTCTGCAGAGATCGAGTGCCAGTGACCTGCTTAAGCACCCTTTCCTGCTACAGAGTGGTGCGCCGCGCTGCCTGGTGCCGCTGGTGGAACACTACCGCAAACGCATGTCTTTCTGTTGAGCAATTCTAGGAGCACAAACAAGGGTGTTACAAAGATGAACTCACTGGACTGGATTCTCCTGTAAACAAGCCTTGTGTGACTTACCATTCCTCTGTTATCATACGTGTCTACAGTGACCTGTAACTGCAGCCTTCCACTCGTTACCAGTTTTGCGTTTGGATAAGCAATATTGCATGCTGGCTTTTtagaatgtttaattttgtccaCACAATTCACTGAaacttctgtttttaaaaactgttaaaaatgtgATTCTAGATTTTGGAATtgattttgtgtaaataaataattgtctttaaataataaaaataatgcagaCATTGTACAGAAGAActtctataataaaaaataaaaaaatattatcaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34483 lncRNA upstream 376812 42753358 ~ 42759971 (+) True G25662
TU34478 lncRNA upstream 407274 42727634 ~ 42729509 (+) True G25657
TU34468 lncRNA upstream 418394 42717658 ~ 42718389 (+) True G25647
TU34471 lncRNA upstream 530655 42605901 ~ 42606128 (+) True G25650
TU34443 lncRNA upstream 616841 42519641 ~ 42519942 (+) True G25625
TU34682 lncRNA downstream 88385 43259620 ~ 43262099 (+) False LOC103026014
TU34702 lncRNA downstream 158292 43329527 ~ 43330604 (+) True G25828
TU34701 lncRNA downstream 158780 43330015 ~ 43330604 (+) False G25828
TU34698 lncRNA downstream 161339 43332574 ~ 43341729 (+) False G25828
TU34710 lncRNA downstream 179660 43350895 ~ 43356027 (+) True G25834
XM_007238370.3 mRNA upstream 1395 43115778 ~ 43135388 (+) True LOC103030938
XM_007238371.3 mRNA upstream 25595 43092165 ~ 43111188 (+) True LOC103031260
XM_022686245.1 mRNA upstream 84896 43044192 ~ 43051887 (+) True LOC103041928
XM_022686241.1 mRNA upstream 108172 42922594 ~ 43028611 (+) False otof
XM_022686236.1 mRNA upstream 108340 42922593 ~ 43028443 (+) False otof
XM_007243245.3 mRNA downstream 1705 43172940 ~ 43179219 (+) True LOC103031694
XM_015607896.2 mRNA downstream 89218 43260453 ~ 43262096 (+) True LOC103026014
XM_007230731.2 mRNA downstream 189239 43360474 ~ 43363042 (+) False rps29
XM_022686387.1 mRNA downstream 257228 43428463 ~ 43458757 (+) True LOC103026793
XM_007245322.3 mRNA downstream 319088 43490323 ~ 43494316 (+) True LOC103033920
XR_002652205.1 other upstream 620226 42497777 ~ 42516557 (+) True fgfr1op
TU34411 other upstream 743845 42391640 ~ 42392938 (+) True G25601
TU34410 other upstream 743845 42391645 ~ 42392938 (+) False G25601
TU33591 other upstream 3311065 39819276 ~ 39825718 (+) True G24972
TU33356 other upstream 3738954 39393842 ~ 39397829 (+) False eif2b2
TU34713 other downstream 189234 43360469 ~ 43363444 (+) True rps29
TU34766 other downstream 250536 43421771 ~ 43422046 (+) True G25879
TU34767 other downstream 253157 43424392 ~ 43424906 (+) True G25880
TU34777 other downstream 319551 43490786 ~ 43494315 (+) False LOC103033920
TU35893 other downstream 3357160 46528395 ~ 46530387 (+) False fau

Expression Profile