RNA id: XM_022686387.1


Basic Information

Item Value
RNA id XM_022686387.1
length 5835
RNA type mRNA
GC content 0.45
exon number 17
gene id LOC103026793
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 43428463 ~ 43458757 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cATCCTGTTTGCTGACATTGTTGGGTTCACCAGTTTGGCGTCTCAATGTACGGCTCAGGAGTTGGTCAAACTGCTGAACGAACTCTTTGGGAAGTTTGATGAGCTTGCTACGGAGAATCACTGCAGAAGGATAAAGATCCTGGGGGACTGTTATTACTGTGTGTCAGGCTTGACTCAACCCAAAGCTGACCACGCACACTGCTGTGTGGAGATGGGCCTGGATATGATTGACACCATCACgtctgTTGCAGAGGCTACAGAGGTGGATCTGAATATGCGTGTGGGTTTACACACGGGCCGTGTGCTGTGCGGAGTGCTGGGGTTAAGGAAGTGGCAGTATGATGTCTGGTCAAATGATGTCACACTGGCCAACATGATGGAGGCAGGAGGACTTCCTGGTAAGGTTCATATCACCAAGGCAACCCTGGAGTGCCTGAACGGAGATTACGAGGTGGAGCCGGGCTACGGCAGCGAGAGACACACCTTCCTCAGCAAGCACGCCATCGAGACCTTCTTCATCGTGCCCTCACACAGACGCaagatCTTTCCCGGTTTGATCCTGTCGGATATTAAACCCGCAAAGAAGATGAAGTTTAAGACAGTCTGCTATCTGCTGGTGCAGCTCATGCACTGTAGGAAGATGTTTAAAGCCGAGATTCCTTTCTCCAACGTCATGACCTGCGAGGATGATGATAAGagGCGAGCTCTGCGCACAGCTTCGGAAAAGTTGCGCAGTCGCACGTCTTTCTCAGCTGGAGCGCTGCAAAACTCTCCCGGGACACGAGTCAACCGCTACATTGGGCGACTGATCGAAGCTCGGCAAACTGAGTCTGAGACGGCGGACCTCAATTACGTCACTCTGACCTAtcggaacagagagagagagaagaggtaTCAACAGGTGTATGATGATGGATTTATCAGCAGTGTGGCGATCTCGTTGGTCCTCACTTCACTTTTTGCTTTTGTCTACTTTCTCATCATCCCTCAGGGTCTGGTGATTGTGATACTGCTGGTTCTCTGTATCTGCTTTCACATGGCGAGTGTAATGTACCTCCACATCACTCATGTGCAGtgttCTCCTGACTGTCTCACCCTGCAGATCAGGACCGTTTTGTGTGGCTTTCTGGTGCTTCTGTCCTATTCTGTGACGCAGgggtgtgtgGTGGCGTGCATGCCCTGGTCATGGGGGACGAACTCCAGTGTCTCCTTTATCACGGTGGTCATAGTGAACGGCACTGCAGcaggagtgagtgtgtgcaaaTACACTCCCTACGTCTTTTTATCGTGTGTGATGCCGTCGCTCTCTGTGGCCCTCTACCTGCGCGTGTCATCATTACCCAAAATTCTCCTGCTTTTTCTCCTCAACATCCTCCACACTGTCGTCATGGAGACCAGTGGCTACCGGCAGGCTGTGGGAGGAGGCTTTTTTCACTCACTTGGGTATGATCCTGTTCTGGCAATGCTGCTTTTCTCTGGGGCCCTAATATTACACTGCAGACAACTGGACCTCAAACTCAGACTGGACTACCTCTGGGCCACTCAGgctgaagaggagagagatGACATGGAGAGAGTAAAACTGGACAATAAGAGGATTCTGTTTAACTTGCTTCCTGCTCATGTGGCCCAGCACTTTCTCCTGTCCAATCCACGCAACATGGACCTGTACTACCAGTCCTACTCTCAGGTTGGTGTTCTGTTTGCCTCCATCCCCAATTTCAACGACTTTTACATCGAACTGGACGGAAACAACATGGGTGTGGAATGTCTGCGGCTTCTCAACGAGATCATTGCAGACTTTGACGCGCTGCTGGATAAGGAGTGCTACAGGGACATAGAGAAGATCAAAACCATTGGCAGCACTTACATGGCTGCAGTGGGCCTTGTTCCCACTACTGGATCCAAGCCCAAGAAGTCCATTTCAGCACATTTATGCACAGTGGCTGACTTTGCTATAGAGATGTTTGATGTTCTGGATGCGATAAACTACCAGTCATACAACGACTTTGTGCTCCGAGTGGGTATAAATGTAGGTCCAGTGGTGGCAGGAGTGATCGGTGCTCGCAGGCCTCAATATGACATCTGGGGAAACACAGTCAATGTAGCTAGCAGAATGGACAGTACTGGAGTACAAGGCAAGATCCAGGTGACCGAAGATGTCTTCCGCCTCCTGTCTGGTCATTACCGCTTCCTGTGCCGTGGCCAGGTCAGCGTCAAAGGCAAAGGCCAAATGCTCACCTACTTCCTGGAGGGTTGGTCGAACGAGGGCAGTCTCCAGATGCGATCCAAGAGCCTGGAGAACCGGGTGAGCTCCAGCCCTTGCATCCGGACCAAgttaagccccgcccccacgGTGAGCAGTTACGGAGTCAAAGCACCTAGTGTGGGCCCTGGTCCCGCCCCCTCCAACAACAGCATCCTGTACCTGCCTTCTGTGTCCGTTGACATGGAGAAGGAGGTGTGACTGCCATTGAGATGGATTCTGTGGCAAGCAATCTACTTTCCGATTCGAAGAGGAGGGAGTAcaagaaaagagaggaagaaggacACAGAAGCATGGAGTgacagagagatagaaggaATGAAATGGATGGATGCTGGGAGGGAGTGACTAGAGAAGAAAGGCCAACCCTGCTGTACACAGGTTGACCTTGATCTTTactagagaggagagagggagagatgctAATTTCTTAAATACAGAGAGTAGCCCttcccttcacacacacacaaacataacgAGCAGTTTTGtctatttgtgtatgtgtgtgtgtgtgtatgtttgaaaATGAGCATTAGCacatatgtgtgcatgtgtgtgctgTAAGAGTTTGCGTTTTAATGAGTCTTCCTCAGTCCAGCTAGATATCAGGGGCTCCTAAACCTGGAGCATGTGTTCTACAGTAATGGCAGCTTCACACCAACAGAGGAGACACACACTCctctatgtgtgtttgtgtgtgtgtgtgcatgtgtgtctattagtttgtgtgtgtgggactgTTCAGCAATGCTAGAGAATTAAGGCCACGGCATCAACCATTCAGAGCATGTTTATATAGTGTGGACTGAACAGTTAAAATCTAAACAGCgctgtattttacatttcttatgtgtgtgtgtgtgtttgtctgtgtgtgtgtgtgtgtgtgagaaagagagagagagagtggttgtATGCAAAAGACAGCAAGTGTTACAGACAAGGAGAGATTGTGAGAGAATCTACTACCCTTATGAAACCAGTCAGTGCAGGAAAAGAACactttttgtgtttctgttcatTTCTTGGGAAAGGCCTGTGCCAACGTACAGTAAATGAACTTCATGACCTGTAACATTCAAAAGTGTTTGTCTCGCAGCCGTTGCCTTTTGAGTGACTTGCCAAAACTGTACTGAACAATGATGACACGGTACATTCAGAGGCCaaattctacttttttttttttttttaactgctggcAAATCATACTGGTCAGTTTTGCTATCATTAACAGTCTTTCTAATCTTTGGCTTGGATGAGGGTTGGGTTCCTCCGAGGCTAGGATCAGGAAGGTTCGTGTTTGCGCGGCCGCTGACGCTTACGCACAGCCGCTTGGAGAAGAACATTCTCGACGTCAGCGCTCATTTCCCGCAGCCCTTTGACCTCTCAATGAGATGGAGATTTCCTCTCCagcgtaaacacaacagcaaagtCAGCTCTATCCTCTGAGATACGTTTCCACCCGCTGTTGATGGTGGACTTCACAAGTTCACTAACAGTCAGTACTCTTGAATTATCAGCTTGATTATCTGTCTGTCAATACGGAAGCTTAGCTATTCATGCTAAGCTAGCTATTACATGAACCAACACAACTGTACATGGGGATgaaagaaacaagcaaaaaaaaaaaaaacagaagtttttttttttttgatagtgTAAAAATAGCTCCTGTGGCTCGTTCTTAATTCGCTGATATTTGTTCTTTTTGAGAGTTTCTAAGTAGGCTAATGCTTAAACTGATCCCGTTAGTGCTGCTGGCAACAGGGATTTAGCCTTGTGCTTGCACAAGGAGTGCTAGCACAGGATCAAACTTGCATGAGATTTAAATGGTGTGCTAAGCTGATGGTTGCTGTAAGACGCTCTTTGAGcctttggttgttttttttatttttttttattaaacatctgGGACCAGATTCACAAAAGtgtgaaaagaaataaatgttttttagacTTAGTGCTTAGTCTTCATTTCAGACTTGAGATAAATGTTAAgacatttttattgatatttaaaaaaatgtaaagtagtggaaagtttttttcttaGGAAAACTTCTGTGAATCTGGTCCCTGGATCTTAATAGAGCTTGCACAAAGCCACAGGTGGTTTAAGACTCACTGGCAAAGAGCAGTAGGTCTGATCTGTTGGTCTCTCatgttcctttttttaattttctgttttttctttcttttttactttttggtgAAAAGTATAGCTTTGATATTTCTCCAAGTATGCCTAGGGAATGAAGTTCATGGCTTCACGCATGCCGTTCTGCGTGTCCCTCTTCGCATGCCATAATTCTACCTTGTCTGCTCTTTTAGCTAAGTGCAATGTGTTTCTAATGCATGACTAATgcaaaaactgaacaaaaaaaaagggttaagtgttaaataaatggaaaaaaggcTTTAGCTGCACTGCATGAGCCCAGATGAGtggccttttttcttttttactgttttttgggATTCAGACCTTTATCAACAGCTCGTTCCTTTCCTTCTTCATGCATGGTGCTGTCACGTGTTGGAGAAAGCTTGGGAGTATTGTAGCATATTGCCGCCTTTTCTGGCTCTTGAGGTGACTGCCTTCTATCCAGCGGTTGTCGGGGTGGGTGTATTCCTTTGTGCCAACACATATCGTTACCGACATATCAACTCCAGTGTTCTATTGTAGCACAAattttgttatattgtgtttGATTCCACTTAtgatgttgtttttaaaaagaaaatgtagttCTCTTATGCACTGGATCCACCAAGGGCACAGTCTTGGCTTCCTGTGAAACTTATCGGGGTGGGATGTGTAGATGTTGGGATGTGTAGTCTTCTCATGTGTTTTGGAGaagtatattttctttaaactcTATCAGTGCCGAGTAAAGAGTTCTTAGCTGAAGTATTACTATTTTGTGTGACAGAACAAAGCTCTGTAAGCTTGTAATTGGATACAGGTCAAATGCACTGTTTCAAATGACACTTTCAGGAGCTTTGCATTTTGTTGCACTCGTGGCCCGAGAACCTCCCTTCACCCCAAAAGCGAAGGCTGTTTGAGGTGCTACAGCAGCTGAGAGACCTAACACAGTTTCATCTTTCTACACGAAATGTTCAATCATTATTCctaagccaaaatcttcctttTATCTATGAGTAGGCCTAGTTCAGATTTATGATCCAACAAATGTAGccacatgacaaaaaaaatatatggttctattttctatttgcaAACTCCAGTGGCCTAACTTACTGCCGTTCGGAATATTACGACCAGATCGACTTTATTAATGCATAAAAGTGCACAGTACAAATATATAGACTAGATTTTCATGTGAATTAGATATTTTCATATTTGATACGGGTTTAACTTATTGTATGTATGAAACCTTCTGTAGAGTAAACAGAAAGTATTTTACTgatcttaaatatatatgtgctaTTTTTGGGGTTGCAATGTATTGATTGCAATGGTGATATATGTGAATGTAAATTTcatattgagatcttttataCTTGTGTTTGCACTGttctggaataaaataacaatgagaGACAGA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0009190 cyclic nucleotide biosynthetic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004016 adenylate cyclase activity molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K08041 ADCY1; adenylate cyclase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34710 lncRNA upstream 72436 43350895 ~ 43356027 (+) True G25834
TU34698 lncRNA upstream 86734 43332574 ~ 43341729 (+) False G25828
TU34702 lncRNA upstream 97859 43329527 ~ 43330604 (+) True G25828
TU34701 lncRNA upstream 97859 43330015 ~ 43330604 (+) False G25828
TU34682 lncRNA upstream 166364 43259620 ~ 43262099 (+) False LOC103026014
XR_002649720.1 lncRNA downstream 4843 43463600 ~ 43465928 (+) True LOC111191905
TU34774 lncRNA downstream 4852 43463609 ~ 43463819 (+) False LOC111191905
TU34776 lncRNA downstream 25338 43484095 ~ 43484399 (+) True G25888
TU34783 lncRNA downstream 58041 43516798 ~ 43517094 (+) True G25893
TU34805 lncRNA downstream 137281 43596038 ~ 43644026 (+) False G25914
XM_007230731.2 mRNA upstream 65421 43360474 ~ 43363042 (+) False rps29
XM_015607896.2 mRNA upstream 166367 43260453 ~ 43262096 (+) True LOC103026014
XM_007243245.3 mRNA upstream 249244 43172940 ~ 43179219 (+) True LOC103031694
XM_022686303.1 mRNA upstream 257228 43139803 ~ 43171235 (+) False LOC103030407
XM_007245322.3 mRNA downstream 31566 43490323 ~ 43494316 (+) True LOC103033920
XM_022686409.1 mRNA downstream 216244 43675001 ~ 43688806 (+) False LOC103027693
XM_022686420.1 mRNA downstream 216247 43675004 ~ 43688806 (+) True LOC103027693
XM_022686402.1 mRNA downstream 216247 43675004 ~ 43688806 (+) False LOC103027693
XM_022686416.1 mRNA downstream 216248 43675005 ~ 43688806 (+) False LOC103027693
TU34767 other upstream 3557 43424392 ~ 43424906 (+) True G25880
TU34766 other upstream 6417 43421771 ~ 43422046 (+) True G25879
TU34713 other upstream 65019 43360469 ~ 43363444 (+) True rps29
XR_002652205.1 other upstream 911906 42497777 ~ 42516557 (+) True fgfr1op
TU34411 other upstream 1035525 42391640 ~ 42392938 (+) True G25601
TU34777 other downstream 32029 43490786 ~ 43494315 (+) False LOC103033920
TU35893 other downstream 3069638 46528395 ~ 46530387 (+) False fau
TU36151 other downstream 4819510 48278267 ~ 48282874 (+) True G26915
TU36153 other downstream 4822008 48280765 ~ 48282874 (+) False G26915
TU36264 other downstream 5097040 48555797 ~ 48558740 (+) True G26995

Expression Profile