RNA id: XM_022686715.1


Basic Information

Item Value
RNA id XM_022686715.1
length 2258
RNA type mRNA
GC content 0.47
exon number 21
gene id gpcpd1
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 45451286 ~ 45465612 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCGTTATTATTTCAGATGAAAACATGGATATGTCAGCAGCACTCAGCTAGCGCTCGACACCAGCCGACCCTTTGCAGTCCGGCGATGAGGCCTTCAGTCTGACCCGAGGGGTAACACTATACATGGAAGAATCAGAAGCAGGACAAAAAACAAGCTGTTGTGCCTCACTAACAGCCATGGAATGCACTCAGGTCACATTTATTGTAAGAGGAGCTACATCACCTGgCGAGGTGATTGCAGTAGTTGGCAGCTGTGAGACGCTGGGCAGCTGGTGTTATCAGAATGCAGTGCCCTTGCAGGCAACAGCAGAAGATGGCACTCTATGGAAAAAGACAGTCGCACTTCCAAAGGGTGTCGAACACAAATATCGCTATTTTACGGGGTTCTTTCTGGAATCTAAGAATGCAGGTGGCCCAGGTCAAGTGATAGTCAATAAATGGGAGACCCATCAGCTGCCTCGATCAGTGAGCCCAACAGAGTCAGACCAAACTATTGACGATGGGCAGTTTGGAGTCAGTGGTGGTATTGAATGTACAGATTCCGGCTGGTTGACATCTCAGACTGAAATTCGCCTCCGGCTCCATTACTCTATTAAGCCTCCAGTGTCCATTACTAAAATGAAATTTAAGAAATCTCGGTTCAGGCTGAAGTTGACATTGGAGGGTGTTGAGGAGGAAGAAGATGAGGAGAGCCCTTCATCCTGGCACAAGATGACCACCACACTTGAGATCAGTATGATCAGTGATAGTGGCTATAAGTCCCGACATTCCCAGCCAGAGTGTGGCTATTCCCTGGAACCAACAAAGTGGACTGAGTACAGCATTCACACCATGGACCCTGATAACCTGGAGCTCATCTTTGACCTCTTTGAGGAGGACTTGAGTGAGAAGGTTGTTCAGAGTGATGTTCACCCTGGCCTTGTTGGCACTGCCTGCCTCTTATCTTCGTCTTTCGTGGAAAGTGGCAAGGACAATGGAGTTGTTACCCTCCCCATCATGAGCAGAAATTCCAGGCAGACCATTGGCAAAGTTAGAGTGGATTATCTAGTTATCCGGCCCATTCAGGGCTTTCAATGTGACATGCACCAGTCCTTCAGCAAGTACTGGCGGAAAAGGAGTGCACTGGATGTGGGACACAGAGGAGCAGGGAGCTCACATGCTGCCAAACATCACAAAATCAGGGAAAACACAATTGCCTCATTTCTAAGTGCCGCAAACCACGGAGCCGCATATGTGGAGTTTGATGTTCATCTGTCCAAGGACTTTGTTCCAGTCGTTTATCATGATCTCACATGCTGTATTTCCACCAAGAAGAAAAATGACAAGAATTCCATGGTGCTGTTTGAAGTTCCTGTCAAAGATTTGACCTTTGACCAGCTTCAGCTTCTTAAGCTAGCCCACACAACAGCTATGAAGGTGCATGATCACAAAGacttagtagaagaggaggaggatatAGATGAACATCAGCCCTTTCCATCACTTACTCAGATATTTCAGGCTGTTCCAGAATCTGTGGGCTTTAATATTGAGCTGAAGTGGATATCCCAGTTAAAGGATGGTTCCTGGGATGCGAACTTATCCACTTACTTCAACATGAACCAGTTTCTTGACATCATTCTCACCTGCGTGCTTCAGAATGCTGGAAAGAGAAGGATCGTCTTCTCTTGTTTCGACCCCGATGTGTGTGCAATGGTGCGAAGGAAACAGAACAAGTACCCCATCTTGTTCCTGACTCAGGGCGTATCAGATGTCTACCCGGAGCTGATGGACATCCGTTGTCAGACAACCCAGATAGCCATGAGCTTTGCTCAAAGCGAGGACATTCTGGGTATCAGTGCTCACACTGAGGACCTGCTGCGTAATATGGACTGCATTAAGGAGGCTCAGTCCAAAGGCCTGGTAGTCTTCTGCTGGGGGGATGACAACAATGACCATGAGAACAGGAGAAAACTCAGGGAACACGGCATTAATGGCCTCATTTATGACAGaATCTGTGATGACCAGCTCGAGCAGCCCAACATCTTCAAAGTAGAAGAGCAAGTATCTTTGAAGGAGGTAATTCCTGAGGAGACTCTGAAAAGCTGTGCCTGCTCCACGTACAGTATTCCCTGCACATCAGTACCCTGTTCGAGTAAAACTCAAGTTGGCAGCGGCGAGTCAGACTCGGGCCTCAGTTCATCCTGAGCTTGCAGCGTTCAGTCAACCTTTATACAAAATTCCATGTTTTCTACAAAGCAGTACAAATCACTCAACACA

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0006071 glycerol metabolic process biological_process
GO:2001070 starch binding molecular_function
GO:0008889 glycerophosphodiester phosphodiesterase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35468 lncRNA downstream 41250 45408433 ~ 45410036 (-) True G26386
TU35418 lncRNA downstream 211068 45239901 ~ 45240218 (-) True G26347
TU35416 lncRNA downstream 290356 45142890 ~ 45160930 (-) True G26345
TU35412 lncRNA downstream 337325 45112538 ~ 45113961 (-) True LOC111197337
XR_002649723.1 lncRNA upstream 131975 45597587 ~ 45604161 (-) True LOC111191909
XR_002652433.1 lncRNA upstream 267704 45733316 ~ 45742850 (-) True LOC111197418
TU35704 lncRNA upstream 377562 45843174 ~ 45844931 (-) True G26563
TU35706 lncRNA upstream 382005 45847617 ~ 45849592 (-) True G26564
TU35764 lncRNA upstream 601036 46066648 ~ 46067188 (-) True G26612
XM_007229702.2 mRNA downstream 3120 45441438 ~ 45448166 (-) True LOC103023605
XM_022686708.1 mRNA downstream 4770 45441438 ~ 45446516 (-) False LOC103023605
XM_007229705.3 mRNA downstream 85440 45358910 ~ 45365846 (-) True trib2
XM_007229706.2 mRNA downstream 136031 44983244 ~ 45315255 (-) True klhl29
XM_022686658.1 mRNA downstream 580596 44856099 ~ 44870690 (-) False ubxn2a
XM_007229699.3 mRNA upstream 36039 45501651 ~ 45512516 (-) True trmt6
XM_007229700.3 mRNA upstream 49583 45515195 ~ 45531393 (-) True fermt1
XM_015605195.2 mRNA upstream 49583 45515195 ~ 45528516 (-) False fermt1
XM_007232825.3 mRNA upstream 482416 45948028 ~ 46055938 (-) False pak5
XM_022686853.1 mRNA upstream 482416 45948028 ~ 46055938 (-) False pak5
TU35470 other downstream 13701 45436109 ~ 45437585 (-) True G26388
TU35363 other downstream 565485 44882778 ~ 44885801 (-) True G26295
TU35356 other downstream 580607 44867094 ~ 44870679 (-) False ubxn2a
TU35290 other downstream 651811 44769292 ~ 44799475 (-) False fkbp1b
TU35737 other upstream 469541 45935153 ~ 45935622 (-) True G26588
TU35796 other upstream 826475 46292087 ~ 46292806 (-) True G26636
XR_001518806.2 other upstream 961805 46427417 ~ 46435925 (-) False naa30
TU35879 other upstream 1053259 46518871 ~ 46521243 (-) False G26695
TU35877 other upstream 1058036 46523648 ~ 46525996 (-) True G26695

Expression Profile